Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048156 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 4.4e-53 211.1 110 100.0
CSS0014539 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 1.6e-15 86.3 47 85.1
CSS0020327 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 1.6e-15 86.3 47 85.1
CSS0022719 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 1.6e-15 86.3 47 85.1
CSS0037916 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 1.6e-15 86.3 47 85.1
CSS0016397 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 1.8e-14 82.8 47 83.0
CSS0039319 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 9.0e-14 80.5 44 84.1
Actinidia02234 Actinidia chinensis HOM05D005091 ORTHO05D006047 3.4e-13 78.6 47 74.5
MD05G1059400 Malus domestica HOM05D005091 ORTHO05D006047 9.9e-13 77.0 46 76.1
Gohir.A01G004000 Gossypium hirsutum HOM05D005091 ORTHO05D006047 1.3e-12 76.6 46 76.1
Gohir.D01G004000 Gossypium hirsutum HOM05D005091 ORTHO05D006047 1.3e-12 76.6 46 76.1
Gorai.002G004900 Gossypium raimondii HOM05D005091 ORTHO05D006047 1.3e-12 76.6 46 76.1
COL.COLO4_26004 Corchorus olitorius HOM05D005091 ORTHO05D006047 2.2e-12 75.9 46 76.1
Rhsim05G0070500 Rhododendron simsii HOM05D005091 ORTHO05D006047 2.2e-12 75.9 47 70.2
Atru.chr5.3102 Acer truncatum HOM05D005091 ORTHO05D006047 2.9e-12 75.5 46 73.9
DCAR_004295 Daucus carota HOM05D005091 ORTHO05D006047 2.9e-12 75.5 47 70.2
Prupe.8G089300 Prunus persica HOM05D005091 ORTHO05D006047 2.9e-12 75.5 46 76.1
Dinv42026 Davidia involucrata HOM05D000284 ORTHO05D006047 3.8e-12 75.1 47 70.2
Dinv42028 Davidia involucrata HOM05D005091 ORTHO05D006047 3.8e-12 75.1 47 70.2
FvH4_2g09910 Fragaria vesca HOM05D005091 ORTHO05D006047 3.8e-12 75.1 46 73.9
FAN15G1732 Fragaria x ananassa HOM05D005091 ORTHO05D006047 3.8e-12 75.1 46 73.9
FAN20G0404 Fragaria x ananassa HOM05D005091 ORTHO05D006047 3.8e-12 75.1 46 73.9
FAN24G2910 Fragaria x ananassa HOM05D005091 ORTHO05D006047 3.8e-12 75.1 46 73.9
MD10G1067500 Malus domestica HOM05D005091 ORTHO05D006047 3.8e-12 75.1 46 73.9
Nn5g29154 Nelumbo nucifera HOM05D005091 ORTHO05D006047 3.8e-12 75.1 46 73.9
RcHm_v2.0_Chr6g0266641 Rosa chinensis HOM05D005091 ORTHO05D006047 3.8e-12 75.1 46 73.9
QL11p045411 Quercus lobata HOM05D005091 ORTHO05D006047 4.9e-12 74.7 46 73.9
vmacro17453 Vaccinium macrocarpon HOM05D005091 ORTHO05D006047 4.9e-12 74.7 47 70.2
Lsat_1_v5_gn_7_91761 Lactuca sativa HOM05D005091 ORTHO05D006047 6.4e-12 74.3 47 66.0
RcHm_v2.0_Chr6g0266811 Rosa chinensis HOM05D005091 ORTHO05D006047 6.4e-12 74.3 46 73.9
CANSAT11G2456 Cannabis sativa HOM05D005091 ORTHO05D006047 8.4e-12 73.9 46 69.6
Cc02_g17150 Coffea canephora HOM05D005091 ORTHO05D006047 8.4e-12 73.9 47 70.2
Duzib132G0651 Durio zibethinus HOM05D005091 ORTHO05D006047 8.4e-12 73.9 46 71.7
Gohir.A04G124200 Gossypium hirsutum HOM05D005091 ORTHO05D006047 8.4e-12 73.9 46 73.9
EL10Ac9g21684 Beta vulgaris HOM05D005091 ORTHO05D006047 1.1e-11 73.6 46 71.7
Manes.12G155700 Manihot esculenta HOM05D005091 ORTHO05D006047 1.1e-11 73.6 46 71.7
Ciclev10028263m.g Citrus clementina HOM05D005091 ORTHO05D006047 1.4e-11 73.2 46 73.9
Lj5C193G6 Lonicera japonica HOM05D005091 ORTHO05D006047 1.4e-11 73.2 47 70.2
Peaxi162Scf00016g00337 Petunia axillaris HOM05D005091 ORTHO05D006047 1.4e-11 73.2 47 70.2
Cpa.g.sc150.55 Carica papaya HOM05D005091 ORTHO05D006047 1.9e-11 72.8 46 67.4
Thhalv10022667m.g Eutrema salsugineum HOM05D005091 ORTHO05D006047 1.9e-11 72.8 46 71.7
Nitab4.5_0005919g0020 Nicotiana tabacum HOM05D005091 ORTHO05D006047 1.9e-11 72.8 47 70.2
Nitab4.5_0009512g0060 Nicotiana tabacum HOM05D005091 ORTHO05D006047 1.9e-11 72.8 47 70.2
Potri.004G160000 Populus trichocarpa HOM05D005091 ORTHO05D006047 1.9e-11 72.8 46 71.7
Hund06247 Selenicereus undatus HOM05D005091 ORTHO05D006047 1.9e-11 72.8 46 71.7
CiPaw.06G131700 Carya illinoinensis HOM05D005091 ORTHO05D006047 2.4e-11 72.4 46 69.6
ECA236G1753 Erigeron canadensis HOM05D005091 ORTHO05D006047 2.4e-11 72.4 47 63.8
Gohir.D04G166300 Gossypium hirsutum HOM05D005091 ORTHO05D006047 2.4e-11 72.4 46 71.7
Gorai.012G154700 Gossypium raimondii HOM05D005091 ORTHO05D006047 2.4e-11 72.4 46 71.7
HanXRQChr04g0127771 Helianthus annuus HOM05D005091 ORTHO05D006047 2.4e-11 72.4 47 63.8
Hma1.2p1_0066F.1_g036020 Hydrangea macrophylla HOM05D005091 ORTHO05D006047 2.4e-11 72.4 47 66.0
Hma1.2p1_0066F.1_g036030 Hydrangea macrophylla HOM05D005091 ORTHO05D006047 2.4e-11 72.4 47 66.0
Lsat_1_v5_gn_9_107760 Lactuca sativa HOM05D005091 ORTHO05D006047 2.4e-11 72.4 47 66.0
Sabra04G0107000 Salix brachista HOM05D005091 ORTHO05D006047 2.4e-11 72.4 47 70.2
ATR0665G578 Amborella trichopoda HOM05D005091 ORTHO05D006047 3.2e-11 72.0 46 71.7
AUR62016783 Chenopodium quinoa HOM05D005091 ORTHO05D006047 3.2e-11 72.0 77 51.9
Lj3g0010610 Lotus japonicus HOM05D005091 ORTHO05D006047 3.2e-11 72.0 46 71.7
Lalb_Chr03g0034131 Lupinus albus HOM05D005091 ORTHO05D006047 3.2e-11 72.0 46 71.7
PGSC0003DMG400030963 Solanum tuberosum HOM05D005091 ORTHO05D006047 3.2e-11 72.0 47 68.1
Thecc.02G079100 Theobroma cacao HOM05D005091 ORTHO05D006047 3.2e-11 72.0 46 71.7
Ah.01g019050 Amaranthus hybridus HOM05D005091 ORTHO05D006047 4.2e-11 71.6 46 69.6
Aqoxy6G01233 Aquilegia oxysepala HOM05D005091 ORTHO05D006047 4.2e-11 71.6 46 69.6
Haze_02317 Corylus avellana HOM05D005091 ORTHO05D006047 4.2e-11 71.6 41 75.6
TAR381G0064 Trochodendron aralioides HOM05D005091 ORTHO05D006047 4.2e-11 71.6 46 69.6
Ca_23899_v3 Cicer arietinum L. HOM05D005091 ORTHO05D006047 5.4e-11 71.2 46 71.7
Oeu004806.3 Olea europaea HOM05D005091 ORTHO05D006047 5.4e-11 71.2 47 70.2
Oeu041611.2 Olea europaea HOM05D005091 ORTHO05D006047 5.4e-11 71.2 47 70.2
Psat4g148720 Pisum sativum HOM05D005091 ORTHO05D006047 5.4e-11 71.2 46 71.7
BcaB03g16352 Brassica carinata HOM05D005091 ORTHO05D006047 7.1e-11 70.9 46 69.6
BcaC06g36149 Brassica carinata HOM05D005091 ORTHO05D006047 7.1e-11 70.9 46 69.6
C07p07220 Brassica napus HOM05D005091 ORTHO05D006047 7.1e-11 70.9 46 69.6
BolC7t41142H Brassica oleracea HOM05D005091 ORTHO05D006047 7.1e-11 70.9 46 69.6
AUR62010439 Chenopodium quinoa HOM05D005091 ORTHO05D006047 7.1e-11 70.9 77 50.6
Os01g0776400 Oryza sativa ssp. japonica HOM05D005091 ORTHO05D006047 7.1e-11 70.9 46 69.6
Sp3g29690 Schrenkiella parvula HOM05D005091 ORTHO05D006047 7.1e-11 70.9 46 69.6
THA.LOC104807298 Tarenaya hassleriana HOM05D005091 ORTHO05D006047 7.1e-11 70.9 46 69.6
TWI79G0003 Tripterygium wilfordii HOM05D005091 ORTHO05D006047 7.1e-11 70.9 46 69.6
CiPaw.05G070800 Carya illinoinensis HOM05D005091 ORTHO05D006047 9.3e-11 70.5 46 69.6
MBI01_g12681_MAGBIO Magnolia biondii HOM05D005091 ORTHO05D006047 9.3e-11 70.5 41 78.0
SalBow6G4139 Salvia bowleyana HOM05D005091 ORTHO05D006047 9.3e-11 70.5 52 61.5
arahy.Tifrunner.gnm1.ann1.6QR9E7 Arachis hypogaea HOM05D005091 ORTHO05D006047 1.2e-10 70.1 46 69.6
arahy.Tifrunner.gnm1.ann1.PP2YAD Arachis hypogaea HOM05D005091 ORTHO05D006047 1.2e-10 70.1 46 69.6
A07p04510 Brassica napus HOM05D005091 ORTHO05D006047 1.2e-10 70.1 46 69.6
BraA07t28242Z Brassica rapa HOM05D005091 ORTHO05D006047 1.2e-10 70.1 46 69.6
CsaV3_2G015120 Cucumis sativus L. HOM05D005091 ORTHO05D006047 1.2e-10 70.1 46 67.4
Eucgr.G01705 Eucalyptus grandis HOM05D005091 ORTHO05D006047 1.2e-10 70.1 46 65.2
Glyma.12G236400 Glycine max HOM05D005091 ORTHO05D006047 1.2e-10 70.1 46 69.6
Glyma.13G201900 Glycine max HOM05D005091 ORTHO05D006047 1.2e-10 70.1 46 69.6
Medtr8g037340 Medicago truncatula HOM05D005091 ORTHO05D006047 1.2e-10 70.1 46 67.4
PGR042G2402 Punica granatum HOM05D005091 ORTHO05D006047 1.2e-10 70.1 46 65.2
Solyc01g110030.3 Solanum lycopersicum HOM05D005091 ORTHO05D006047 1.2e-10 70.1 47 66.0
Sopen01g052220 Solanum pennellii HOM05D005091 ORTHO05D006047 1.2e-10 70.1 47 66.0
CARHR106660 Cardamine hirsuta HOM05D005091 ORTHO05D006047 1.6e-10 69.7 46 67.4
MELO3C023337.2 Cucumis melo HOM05D005091 ORTHO05D006047 1.6e-10 69.7 46 67.4
Sc08g0000700 Simmondsia chinensis HOM05D005091 ORTHO05D006047 1.6e-10 69.7 46 65.2
TAR625G0679 Trochodendron aralioides HOM05D005091 ORTHO05D006047 1.6e-10 69.7 46 65.2
Sed0016950 Sechium edule HOM05D005091 ORTHO05D006047 2.1e-10 69.3 46 65.2
SGA_v2.0_scaffold58G20494 Striga asiatica HOM05D005091 ORTHO05D006047 2.1e-10 69.3 47 63.8
GSVIVG01024219001 Vitis vinifera HOM05D005091 ORTHO05D006047 2.1e-10 69.3 46 65.2
Aa31LG8G13770 Aethionema arabicum HOM05D005091 ORTHO05D006047 2.7e-10 68.9 49 63.3
ClCG11G004080 Citrullus lanatus HOM05D005091 ORTHO05D006047 2.7e-10 68.9 46 65.2
PSO541G2662 Papaver somniferum HOM05D005091 ORTHO05D006047 2.7e-10 68.9 46 65.2
PSO675G3543 Papaver somniferum HOM05D005091 ORTHO05D006047 2.7e-10 68.9 46 65.2
Phvul.011G210700 Phaseolus vulgaris HOM05D005091 ORTHO05D006047 3.5e-10 68.6 46 67.4
TPR.G1894 Trifolium pratense HOM05D005091 ORTHO05D006047 3.5e-10 68.6 46 67.4
SEGI_12567 Sequoiadendron giganteum HOM05D005091 ORTHO05D006047 4.6e-10 68.2 46 63.0
CDE06G1738 Ceratophyllum demersum HOM05D005091 ORTHO05D006047 6.0e-10 67.8 46 63.0
AL3G52590 Arabidopsis lyrata HOM05D005091 ORTHO05D006047 1.0e-09 67.0 46 65.2
AT2G16405 Arabidopsis thaliana HOM05D005091 ORTHO05D006047 1.7e-09 66.2 46 63.0
MSTRG.16832 Avicennia marina HOM05D005091 ORTHO05D006047 1.7e-09 66.2 51 62.7
Carub.0003s3018 Capsella rubella HOM05D005091 ORTHO05D006047 3.0e-09 65.5 46 65.2
Migut.B00202 Erythranthe guttata HOM05D005091 ORTHO05D006047 5.1e-09 64.7 47 59.6
HPP92_010256 Vanilla planifolia HOM05D005091 ORTHO05D006047 6.6e-09 64.3 46 60.9
HPP92_010449 Vanilla planifolia HOM05D005091 ORTHO05D006047 6.6e-09 64.3 46 60.9
VMungo1127G0930 Vigna mungo HOM05D005091 ORTHO05D006047 8.7e-09 63.9 44 65.9
Zm00001eb151660 Zea mays HOM05D005091 ORTHO05D006047 8.7e-09 63.9 46 58.7
unitig_21.g20796 Utricularia gibba HOM05D005091 ORTHO05D006047 9.6e-08 60.5 47 59.6
SMO232G0022 Selaginella moellendorffii HOM05D005091 ORTHO05D006047 2.1e-07 59.3 44 59.1
Mapoly0099s0024 Marchantia polymorpha HOM05D005091 ORTHO05D006047 2.8e-07 58.9 44 50.0
HPP92_010166 Vanilla planifolia HOM05D005091 ORTHO05D006047 6.2e-07 57.8 39 66.7
AagrBONN_evm.TU.Sc2ySwM_344.1521 Anthoceros agrestis HOM05D005091 ORTHO05D006047 1.4e-06 56.6 46 50.0
Pp3c21_5350 Physcomitrium patens HOM05D005091 ORTHO05D006047 4.0e-06 55.1 44 59.1


User provided reference genes

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