Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048155 Camellia sinensis var. sinensis HOM05D005160 ORTHO05D006127 9.2e-301 1036.2 550 100.0
Rhsim11G0191300 Rhododendron simsii HOM05D005160 ORTHO05D006127 5.7e-218 761.1 552 75.9
vmacro02269 Vaccinium macrocarpon HOM05D005160 ORTHO05D006127 2.2e-217 759.2 574 74.0
Hma1.2p1_0163F.1_g072320 Hydrangea macrophylla HOM05D005160 ORTHO05D006127 2.6e-215 752.3 557 74.3
Haze_02160 Corylus avellana HOM05D005160 ORTHO05D006127 4.5e-215 751.5 549 71.9
Cfa005223 Carpinus fangiana HOM05D005160 ORTHO05D006127 1.5e-210 736.5 551 70.4
Dinv41951 Davidia involucrata HOM05D005160 ORTHO05D006127 3.3e-210 735.3 531 76.1
Cc02_g16320 Coffea canephora HOM05D005160 ORTHO05D006127 5.0e-206 721.5 562 69.4
CiPaw.05G080400 Carya illinoinensis HOM05D005160 ORTHO05D006127 1.9e-205 719.5 557 69.8
MSTRG.16896 Avicennia marina HOM05D005160 ORTHO05D006127 1.6e-204 716.5 588 66.3
Thecc.02G062800 Theobroma cacao HOM05D005160 ORTHO05D006127 8.0e-204 714.1 559 70.8
Thecc.02G062500 Theobroma cacao HOM05D005160 ORTHO05D006127 1.8e-203 713.0 564 70.9
Potri.009G132900 Populus trichocarpa HOM05D005160 ORTHO05D006127 3.4e-202 708.8 548 70.1
QL11p049938 Quercus lobata HOM05D005160 ORTHO05D006127 1.3e-201 706.8 571 68.0
TAR381G1224 Trochodendron aralioides HOM05D005160 ORTHO05D006127 1.1e-200 703.7 562 68.7
Gohir.D01G157700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 4.1e-200 701.8 566 68.4
Duzib132G0556 Durio zibethinus HOM05D005160 ORTHO05D006127 7.0e-200 701.0 556 69.4
Ciclev10028126m.g Citrus clementina HOM05D005160 ORTHO05D006127 9.1e-200 700.7 554 68.8
Potri.004G173600 Populus trichocarpa HOM05D005160 ORTHO05D006127 1.6e-199 699.9 552 68.7
GSVIVG01024045001 Vitis vinifera HOM05D005160 ORTHO05D006127 2.0e-199 699.5 551 69.3
PGSC0003DMG402006199 Solanum tuberosum HOM05D005160 ORTHO05D006127 1.7e-198 696.4 549 68.1
Hund06424 Selenicereus undatus HOM05D005160 ORTHO05D006127 2.9e-198 695.7 553 66.9
CiPaw.06G123200 Carya illinoinensis HOM05D005160 ORTHO05D006127 6.5e-198 694.5 523 72.5
Nitab4.5_0001891g0030 Nicotiana tabacum HOM05D005160 ORTHO05D006127 8.6e-198 694.1 541 68.9
Peaxi162Scf00362g00839 Petunia axillaris HOM05D005160 ORTHO05D006127 8.6e-198 694.1 544 68.4
Gorai.002G195800 Gossypium raimondii HOM05D005160 ORTHO05D006127 1.9e-197 693.0 566 68.2
Gohir.A01G166700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 2.5e-197 692.6 563 68.0
SalBow1G7891 Salvia bowleyana HOM05D005160 ORTHO05D006127 2.5e-197 692.6 581 64.4
MELO3C020808.2 Cucumis melo HOM05D005160 ORTHO05D006127 3.6e-196 688.7 558 65.9
CsaV3_2G015970 Cucumis sativus L. HOM05D005160 ORTHO05D006127 4.7e-196 688.3 558 65.6
EL10Ac9g21400 Beta vulgaris HOM05D005160 ORTHO05D006127 8.0e-196 687.6 553 66.5
Nitab4.5_0005837g0020 Nicotiana tabacum HOM05D005160 ORTHO05D006127 1.0e-195 687.2 541 67.8
Solyc01g111370.3 Solanum lycopersicum HOM05D005160 ORTHO05D006127 1.0e-195 687.2 549 67.4
Sopen01g053440 Solanum pennellii HOM05D005160 ORTHO05D006127 1.0e-195 687.2 549 67.6
THA.LOC104824770 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 1.0e-195 687.2 554 65.7
Sc08g0003030 Simmondsia chinensis HOM05D005160 ORTHO05D006127 2.3e-195 686.0 569 66.8
TWI31G1222 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 2.3e-195 686.0 551 68.8
Migut.B00095 Erythranthe guttata HOM05D005160 ORTHO05D006127 5.2e-195 684.9 563 65.2
Manes.04G073300 Manihot esculenta HOM05D005160 ORTHO05D006127 6.8e-195 684.5 559 67.1
CAN.G588.54 Capsicum annuum HOM05D005160 ORTHO05D006127 1.2e-194 683.7 539 68.1
FvH4_2g01450 Fragaria vesca HOM05D005160 ORTHO05D006127 1.2e-194 683.7 553 68.2
FAN24G2272 Fragaria x ananassa HOM05D005160 ORTHO05D006127 1.2e-194 683.7 553 68.2
RcHm_v2.0_Chr6g0244091 Rosa chinensis HOM05D005160 ORTHO05D006127 1.2e-194 683.7 552 67.8
Duzib052G1050 Durio zibethinus HOM05D005160 ORTHO05D006127 5.7e-194 681.4 563 67.9
Oeu014453.1 Olea europaea HOM05D005160 ORTHO05D006127 5.7e-194 681.4 627 61.4
TWI75G0220 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 3.7e-193 678.7 555 67.4
Nn5g30735 Nelumbo nucifera HOM05D005160 ORTHO05D006127 8.3e-193 677.6 561 67.0
MD10G1123200 Malus domestica HOM05D005160 ORTHO05D006127 1.1e-192 677.2 561 66.1
Lj3g0012456 Lotus japonicus HOM05D005160 ORTHO05D006127 5.4e-192 674.9 562 66.7
Atru.chr5.3293 Acer truncatum HOM05D005160 ORTHO05D006127 2.0e-191 672.9 563 67.0
AT4G38640 Arabidopsis thaliana HOM05D005160 ORTHO05D006127 2.7e-191 672.5 550 65.6
AUR62010059 Chenopodium quinoa HOM05D005160 ORTHO05D006127 2.7e-191 672.5 553 66.4
CARHR294360 Cardamine hirsuta HOM05D005160 ORTHO05D006127 4.5e-191 671.8 550 66.9
THA.LOC104804092 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 4.5e-191 671.8 551 65.2
Phvul.011G034500 Phaseolus vulgaris HOM05D005160 ORTHO05D006127 7.8e-191 671.0 549 65.8
AUR62013051 Chenopodium quinoa HOM05D005160 ORTHO05D006127 1.7e-190 669.8 557 65.4
FAN15G3563 Fragaria x ananassa HOM05D005160 ORTHO05D006127 1.7e-190 669.8 558 67.4
Lalb_Chr03g0025091 Lupinus albus HOM05D005160 ORTHO05D006127 2.3e-190 669.5 555 64.9
FAN27G2227 Fragaria x ananassa HOM05D005160 ORTHO05D006127 2.9e-190 669.1 558 67.2
Sabra09G0103200 Salix brachista HOM05D005160 ORTHO05D006127 2.9e-190 669.1 544 68.2
ClCG02G011810 Citrullus lanatus HOM05D005160 ORTHO05D006127 3.8e-190 668.7 563 65.2
Aa31LG6G16530 Aethionema arabicum HOM05D005160 ORTHO05D006127 3.3e-189 665.6 540 66.1
Sabra04G0115600 Salix brachista HOM05D005160 ORTHO05D006127 3.3e-189 665.6 535 67.9
Carub.0007s0051 Capsella rubella HOM05D005160 ORTHO05D006127 4.3e-189 665.2 549 65.4
FAN20G0465 Fragaria x ananassa HOM05D005160 ORTHO05D006127 5.6e-189 664.8 553 66.9
Sp7g37140 Schrenkiella parvula HOM05D005160 ORTHO05D006127 1.2e-188 663.7 548 66.2
AL7G10530 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 2.1e-188 662.9 547 65.6
VMungo1127G1693 Vigna mungo HOM05D005160 ORTHO05D006127 2.8e-188 662.5 553 65.3
Thhalv10024826m.g Eutrema salsugineum HOM05D005160 ORTHO05D006127 4.7e-188 661.8 549 65.6
Sed0006607 Sechium edule HOM05D005160 ORTHO05D006127 1.8e-187 659.8 542 66.1
Medtr4g073620 Medicago truncatula HOM05D005160 ORTHO05D006127 2.6e-186 656.0 546 64.8
Aqoxy5G01804 Aquilegia oxysepala HOM05D005160 ORTHO05D006127 9.8e-186 654.1 550 66.4
Lsat_1_v5_gn_3_46280 Lactuca sativa HOM05D005160 ORTHO05D006127 1.3e-185 653.7 558 65.2
BolC3t19975H Brassica oleracea HOM05D005160 ORTHO05D006127 6.4e-185 651.4 530 66.2
Ca_19053_v3 Cicer arietinum L. HOM05D005160 ORTHO05D006127 6.4e-185 651.4 551 65.2
BcaB03g12216 Brassica carinata HOM05D005160 ORTHO05D006127 3.2e-184 649.0 540 65.2
BcaC01g00246 Brassica carinata HOM05D005160 ORTHO05D006127 3.2e-184 649.0 530 65.7
Prupe.8G163700 Prunus persica HOM05D005160 ORTHO05D006127 4.1e-184 648.7 563 64.7
C03p77200 Brassica napus HOM05D005160 ORTHO05D006127 5.4e-184 648.3 530 65.8
Glyma.12G031600 Glycine max HOM05D005160 ORTHO05D006127 7.0e-184 647.9 556 63.5
SGA_v2.0_scaffold32G13272 Striga asiatica HOM05D005160 ORTHO05D006127 2.7e-183 646.0 568 62.9
Glyma.11G106500 Glycine max HOM05D005160 ORTHO05D006127 3.5e-183 645.6 556 63.5
DCAR_003159 Daucus carota HOM05D005160 ORTHO05D006127 4.6e-183 645.2 526 66.0
SGA_v2.0_scaffold58G20392 Striga asiatica HOM05D005160 ORTHO05D006127 1.3e-182 643.7 575 61.7
Psat7g175760 Pisum sativum HOM05D005160 ORTHO05D006127 5.0e-182 641.7 552 64.7
A08p24110 Brassica napus HOM05D005160 ORTHO05D006127 1.1e-181 640.6 529 65.4
Actinidia20505 Actinidia chinensis HOM05D005160 ORTHO05D006127 5.6e-181 638.3 511 70.8
Ah.01g022840 Amaranthus hybridus HOM05D005160 ORTHO05D006127 4.7e-180 635.2 552 62.5
MBI09_g14140_MAGBIO Magnolia biondii HOM05D005160 ORTHO05D006127 2.3e-179 632.9 559 63.3
Eucgr.I01400 Eucalyptus grandis HOM05D005160 ORTHO05D006127 4.0e-179 632.1 462 72.5
MD05G1119500 Malus domestica HOM05D005160 ORTHO05D006127 1.4e-176 623.6 563 62.7
HanXRQChr17g0543921 Helianthus annuus HOM05D005160 ORTHO05D006127 2.4e-176 622.9 495 66.5
PSO170G2472 Papaver somniferum HOM05D005160 ORTHO05D006127 1.7e-174 616.7 561 62.7
PSO700G0063 Papaver somniferum HOM05D005160 ORTHO05D006127 5.6e-173 611.7 563 62.5
Actinidia00615 Actinidia chinensis HOM05D005160 ORTHO05D006127 2.6e-170 602.8 493 69.8
ATR0579G151 Amborella trichopoda HOM05D005160 ORTHO05D006127 1.2e-159 567.4 595 55.6
TPR.G39261 Trifolium pratense HOM05D005160 ORTHO05D006127 2.4e-152 543.1 447 66.0
SEGI_02117 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 2.0e-138 496.9 584 49.3
COL.COLO4_17310 Corchorus olitorius HOM05D005160 ORTHO05D006127 2.4e-136 490.0 536 54.7
unitig_0.g42 Utricularia gibba HOM05D005160 ORTHO05D000138 1.3e-134 484.2 466 55.8
Oeu006646.1 Olea europaea HOM05D005160 ORTHO05D006127 3.7e-132 476.1 465 57.6
Manes.11G095300 Manihot esculenta HOM05D005160 ORTHO05D006127 2.5e-128 463.4 393 65.6
CANSAT54G2532 Cannabis sativa HOM05D005160 ORTHO05D006127 2.0e-109 400.6 348 62.6
ECA246G0167 Erigeron canadensis HOM05D005160 ORTHO05D006127 2.6e-109 400.2 275 75.3
Lj5A181T55 Lonicera japonica HOM05D005160 ORTHO05D006127 1.5e-106 391.0 394 55.3
SMO012G0038 Selaginella moellendorffii HOM05D005160 ORTHO05D006127 1.5e-106 391.0 521 44.7
CDE02G2386 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 2.0e-106 390.6 305 68.5
Cpa.g.sc37.161 Carica papaya HOM05D005160 ORTHO05D006127 2.9e-105 386.7 351 60.4
CDE04G1868 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 1.4e-104 384.4 305 68.9
BraA08t34366Z Brassica rapa HOM05D005160 ORTHO05D006127 4.4e-101 372.9 332 61.7
Manes.05G150701 Manihot esculenta HOM05D005160 ORTHO05D006127 1.7e-100 370.9 304 65.5
Manes.07G080900 Manihot esculenta HOM05D005160 ORTHO05D006127 5.9e-98 362.5 304 64.1
arahy.Tifrunner.gnm1.ann1.JXV2U6 Arachis hypogaea HOM05D005160 ORTHO05D006127 5.0e-97 359.4 337 60.5
arahy.Tifrunner.gnm1.ann1.IE9R9X Arachis hypogaea HOM05D005160 ORTHO05D006127 7.2e-96 355.5 337 59.9
AL7G44960 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 1.0e-94 351.7 396 52.3
Pp3c15_6240 Physcomitrium patens HOM05D005160 ORTHO05D006127 9.1e-91 338.6 579 38.7
AagrBONN_evm.TU.Sc2ySwM_344.1211 Anthoceros agrestis HOM05D005160 ORTHO05D006127 2.7e-87 327.0 566 37.5
Lalb_Chr01g0001791 Lupinus albus HOM05D005160 ORTHO05D006127 5.7e-85 319.3 267 64.0
Mapoly0029s0105 Marchantia polymorpha HOM05D005160 ORTHO05D006127 1.3e-76 291.6 568 36.1
Lj9A392T36 Lonicera japonica HOM05D005160 ORTHO05D006127 6.3e-76 289.3 338 54.7
Lj9A392T37 Lonicera japonica HOM05D005160 ORTHO05D006127 7.0e-67 259.2 169 76.9
Pp3c24_1990 Physcomitrium patens HOM05D005160 ORTHO05D006127 8.9e-46 189.1 551 29.6
Cpa.g.sc37.160 Carica papaya HOM05D005160 ORTHO05D006127 1.2e-45 188.7 178 59.0
SEGI_18476 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 7.6e-45 186.0 187 52.9
Lalb_Chr01g0001781 Lupinus albus HOM05D005160 ORTHO05D006127 2.2e-44 184.5 264 46.6
HPP92_025488 Vanilla planifolia HOM05D005160 ORTHO05D006127 4.0e-38 163.7 124 70.2
CBR_g32587 Chara braunii HOM05D005160 ORTHO05D006127 2.9e-36 157.5 429 26.8
MCO01G409 Micromonas commoda HOM05D005160 ORTHO05D006127 2.7e-34 151.0 348 29.3
MCO08G169 Micromonas commoda HOM05D005160 ORTHO05D006127 9.9e-29 132.5 355 29.9
Migut.N03290 Erythranthe guttata HOM05D005160 ORTHO05D006127 1.4e-27 128.6 108 66.7
Cre09.g390467 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 2.7e-26 124.4 370 27.3
TPR.G40783 Trifolium pratense HOM05D005160 ORTHO05D006127 6.0e-26 123.2 84 71.4
Migut.B00916 Erythranthe guttata HOM05D005160 ORTHO05D006127 3.0e-25 120.9 91 70.3
AagrBONN_evm.TU.Sc2ySwM_228.1713 Anthoceros agrestis HOM05D022446 ORTHO05D006127 4.3e-24 117.1 456 26.5
CDE02G2974 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 3.4e-21 107.5 150 46.7
CDE04G1166 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 3.5e-18 97.4 119 47.9
Cre14.g617800 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 1.3e-17 95.5 436 24.3
VMungo1080G0079 Vigna mungo HOM05D005160 ORTHO05D006127 1.9e-16 91.7 156 42.9
PRCOL_00003313 Prasinoderma coloniale HOM05D005160 ORTHO05D006127 1.5e-13 82.0 513 22.0
Cre06.g278550 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 9.3e-11 72.8 396 23.2
Cre01.g021500 Chlamydomonas reinhardtii HOM05D003356 ORTHO05D004362 2.8e-07 61.2 232 26.7
AagrBONN_evm.TU.Sc2ySwM_228.1711 Anthoceros agrestis HOM05D000883 ORTHO05D002942 6.3e-07 60.1 229 29.7
RcHm_v2.0_Chr7g0187121 Rosa chinensis HOM05D005160 ORTHO05D006127 8.2e-07 59.7 44 61.4
Glyma.08G315000 Glycine max HOM05D005160 ORTHO05D006127 4.1e-06 57.4 51 56.9
arahy.Tifrunner.gnm1.ann1.HVU79Z Arachis hypogaea HOM05D005032 ORTHO05D006268 6.9e-06 56.6 220 24.1


User provided reference genes

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