Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029447 Camellia sinensis var. sinensis HOM05D008333 ORTHO05D010371 2.7e-86 322.0 165 100.0
CSS0048142 Camellia sinensis var. sinensis HOM05D008333 ORTHO05D010371 2.7e-86 322.0 165 100.0
Lj7P401T71 Lonicera japonica HOM05D008333 ORTHO05D010371 6.4e-24 114.8 172 41.9
CSS0007512 Camellia sinensis var. sinensis HOM05D008333 ORTHO05D010371 8.4e-24 114.4 134 49.3
CSS0005469 Camellia sinensis var. sinensis HOM05D008333 ORTHO05D010371 2.7e-22 109.4 141 46.8
Actinidia38746 Actinidia chinensis HOM05D008333 ORTHO05D010371 7.9e-22 107.8 165 37.6
Rhsim08G0066000 Rhododendron simsii HOM05D008333 ORTHO05D010371 3.0e-21 105.9 164 41.5
Duzib147G0630 Durio zibethinus HOM05D008333 ORTHO05D010371 3.9e-21 105.5 116 48.3
COL.COLO4_25183 Corchorus olitorius HOM05D008333 ORTHO05D010371 2.5e-20 102.8 115 47.0
Rhsim08G0065500 Rhododendron simsii HOM05D008333 ORTHO05D010371 4.3e-20 102.1 164 39.6
Rhsim08G0065000 Rhododendron simsii HOM05D008333 ORTHO05D010371 5.6e-20 101.7 134 44.0
Rhsim08G0065100 Rhododendron simsii HOM05D008333 ORTHO05D010371 7.4e-20 101.3 167 39.5
Rhsim08G0065700 Rhododendron simsii HOM05D008333 ORTHO05D010371 7.4e-20 101.3 167 39.5
Rhsim08G0065800 Rhododendron simsii HOM05D008333 ORTHO05D010371 7.4e-20 101.3 159 38.4
Rhsim08G0065600 Rhododendron simsii HOM05D008333 ORTHO05D010371 9.6e-20 100.9 137 43.8
Prupe.3G272200 Prunus persica HOM05D008333 ORTHO05D010371 1.3e-19 100.5 141 39.7
Potri.017G077100 Populus trichocarpa HOM05D008333 ORTHO05D010371 3.6e-19 99.0 123 43.9
Rhsim08G0065300 Rhododendron simsii HOM05D008333 ORTHO05D010371 3.6e-19 99.0 131 44.3
Rhsim08G0065200 Rhododendron simsii HOM05D008333 ORTHO05D010371 4.8e-19 98.6 164 39.0
Rhsim08G0065400 Rhododendron simsii HOM05D008333 ORTHO05D010371 8.1e-19 97.8 133 42.1
Rhsim08G0065900 Rhododendron simsii HOM05D008333 ORTHO05D010371 1.4e-18 97.1 161 39.1
Manes.17G020900 Manihot esculenta HOM05D008333 ORTHO05D010371 2.6e-17 92.8 125 40.8
Thecc.04G074300 Theobroma cacao HOM05D008333 ORTHO05D010371 3.4e-17 92.4 110 46.4
TAR481G0008 Trochodendron aralioides HOM05D008333 ORTHO05D010371 7.6e-17 91.3 158 32.3
RcHm_v2.0_Chr2g0169181 Rosa chinensis HOM05D008333 ORTHO05D010371 2.9e-16 89.4 130 35.4
Nn4g23042 Nelumbo nucifera HOM05D008333 ORTHO05D010371 3.8e-16 89.0 114 43.0
TAR481G0013 Trochodendron aralioides HOM05D008333 ORTHO05D010371 3.8e-16 89.0 154 32.5
FvH4_6g49320 Fragaria vesca HOM05D008333 ORTHO05D010371 3.2e-15 85.9 133 33.8
FAN14G5614 Fragaria x ananassa HOM05D008333 ORTHO05D010371 3.2e-15 85.9 133 33.8
QL02p080535 Quercus lobata HOM05D008333 ORTHO05D010371 4.2e-15 85.5 119 36.1
FvH4_6g49300 Fragaria vesca HOM05D008333 ORTHO05D010371 5.5e-15 85.1 133 33.8
Cfa021167 Carpinus fangiana HOM05D008333 ORTHO05D010371 1.2e-14 84.0 142 33.8
PGSC0003DMG400016257 Solanum tuberosum HOM05D008333 ORTHO05D010371 1.2e-14 84.0 112 42.9
Haze_14585 Corylus avellana HOM05D008333 ORTHO05D010371 1.6e-14 83.6 109 39.4
RcHm_v2.0_Chr2g0169171 Rosa chinensis HOM05D008333 ORTHO05D010371 1.6e-14 83.6 141 33.3
FAN14G1695 Fragaria x ananassa HOM05D008333 ORTHO05D010371 4.6e-14 82.0 133 33.1
FAN14G3781 Fragaria x ananassa HOM05D000349 ORTHO05D001782 4.6e-14 82.0 133 33.1
Cfa007508 Carpinus fangiana HOM05D008333 ORTHO05D010371 1.0e-13 80.9 115 39.1
Sopen04g006510 Solanum pennellii HOM05D008333 ORTHO05D010371 1.8e-13 80.1 100 38.0
Eucgr.I01914 Eucalyptus grandis HOM05D008333 ORTHO05D010371 6.7e-13 78.2 141 36.9
CiPaw.03G030300 Carya illinoinensis HOM05D008333 ORTHO05D010371 8.7e-13 77.8 131 35.1
Eucgr.L02760 Eucalyptus grandis HOM05D008333 ORTHO05D010371 1.5e-12 77.0 141 36.2
Gohir.D11G275775 Gossypium hirsutum HOM05D008333 ORTHO05D010371 3.3e-12 75.9 117 40.2
Gorai.007G297900 Gossypium raimondii HOM05D008333 ORTHO05D010371 3.3e-12 75.9 117 40.2
Eucgr.I01916 Eucalyptus grandis HOM05D008333 ORTHO05D010371 4.3e-12 75.5 135 37.0
Nn3g17126 Nelumbo nucifera HOM05D008333 ORTHO05D010371 4.3e-12 75.5 135 33.3
Gohir.A09G021000 Gossypium hirsutum HOM05D008333 ORTHO05D010371 5.6e-12 75.1 120 35.8
Glyma.18G255500 Glycine max HOM05D008333 ORTHO05D010371 7.4e-12 74.7 143 31.5
Gohir.D09G020400 Gossypium hirsutum HOM05D008333 ORTHO05D010371 9.6e-12 74.3 120 35.0
Gorai.006G024100 Gossypium raimondii HOM05D008333 ORTHO05D010371 9.6e-12 74.3 120 35.8
Gohir.A11G265601 Gossypium hirsutum HOM05D008333 ORTHO05D010371 4.8e-11 72.0 104 42.3
Gorai.006G023800 Gossypium raimondii HOM05D008333 ORTHO05D010371 8.1e-11 71.2 122 32.8
TAR371G0090 Trochodendron aralioides HOM05D008333 ORTHO05D010371 1.1e-10 70.9 126 35.7
Lsat_1_v5_gn_4_179800 Lactuca sativa HOM05D019919 ORTHO05D010371 5.8e-09 65.1 107 29.9
TPR.G7262 Trifolium pratense HOM05D008333 ORTHO05D010371 7.6e-09 64.7 156 31.4
Gohir.D09G020550 Gossypium hirsutum HOM05D008333 ORTHO05D010371 3.2e-07 59.3 118 32.2
Lsat_1_v5_gn_4_179820 Lactuca sativa HOM05D019919 ORTHO05D010371 9.3e-07 57.8 105 28.6
Eucgr.L03696 Eucalyptus grandis HOM05D008333 ORTHO05D010371 7.9e-06 54.7 89 38.2


User provided reference genes

Program Settings