Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048123 Camellia sinensis var. sinensis HOM05D005287 ORTHO05D006893 5.5e-44 183.3 618 100.0
Rhsim06G0174700 Rhododendron simsii HOM05D005287 ORTHO05D006893 7.7e-30 136.3 85 75.3
Dinv11806 Davidia involucrata HOM05D005287 ORTHO05D006893 8.5e-29 132.9 91 74.7
Cfa001595 Carpinus fangiana HOM05D005287 ORTHO05D006893 3.0e-26 124.4 84 69.0
Cfa001592 Carpinus fangiana HOM05D005287 ORTHO05D006893 8.8e-26 122.9 84 67.9
ClCG02G013900 Citrullus lanatus HOM05D005287 ORTHO05D006893 8.8e-26 122.9 83 71.1
QL08p056824 Quercus lobata HOM05D005287 ORTHO05D006893 8.8e-26 122.9 84 66.7
Haze_16934 Corylus avellana HOM05D005287 ORTHO05D006893 1.5e-25 122.1 84 67.9
EL10Ac2g03556 Beta vulgaris HOM05D005287 ORTHO05D006893 3.4e-25 120.9 84 66.7
Lsat_1_v5_gn_9_67461 Lactuca sativa HOM05D005287 ORTHO05D006893 7.5e-25 119.8 85 68.2
Manes.10G042800 Manihot esculenta HOM05D005287 ORTHO05D006893 7.5e-25 119.8 84 67.9
Hma1.2p1_0286F.1_g114160 Hydrangea macrophylla HOM05D005287 ORTHO05D006893 9.8e-25 119.4 86 67.4
HanXRQChr09g0246581 Helianthus annuus HOM05D005287 ORTHO05D006893 6.3e-24 116.7 83 63.9
CANSAT54G2917 Cannabis sativa HOM05D005287 ORTHO05D006893 8.3e-24 116.3 84 63.1
Actinidia38253 Actinidia chinensis HOM05D005287 ORTHO05D006893 1.4e-23 115.5 91 62.6
PGR142G4068 Punica granatum HOM05D005287 ORTHO05D006893 3.1e-23 114.4 86 59.3
Sed0021424 Sechium edule HOM05D005287 ORTHO05D006893 3.1e-23 114.4 84 65.5
MD07G1179000 Malus domestica HOM05D005287 ORTHO05D006893 4.1e-23 114.0 85 63.5
Oeu007697.1 Olea europaea HOM05D005287 ORTHO05D006893 5.4e-23 113.6 87 66.7
Nn5g30586 Nelumbo nucifera HOM05D005287 ORTHO05D006893 7.0e-23 113.2 86 61.6
Eucgr.G02802 Eucalyptus grandis HOM05D005287 ORTHO05D006893 1.6e-22 112.1 86 61.6
CiPaw.01G276400 Carya illinoinensis HOM05D005287 ORTHO05D006893 3.5e-22 110.9 77 66.2
MD01G1131000 Malus domestica HOM05D005287 ORTHO05D006893 3.5e-22 110.9 85 62.4
Medtr1g095880 Medicago truncatula HOM05D005287 ORTHO05D006893 3.5e-22 110.9 83 62.7
RcHm_v2.0_Chr1g0364091 Rosa chinensis HOM05D005287 ORTHO05D006893 5.9e-22 110.2 85 61.2
CsaV3_5G006270 Cucumis sativus L. HOM05D005287 ORTHO05D006893 1.3e-21 109.0 77 67.5
Actinidia03030 Actinidia chinensis HOM05D005287 ORTHO05D006893 2.3e-21 108.2 91 60.4
Sabra10G0168300 Salix brachista HOM05D005287 ORTHO05D006893 2.3e-21 108.2 85 58.8
Potri.010G217600 Populus trichocarpa HOM05D005287 ORTHO05D006893 5.0e-21 107.1 85 57.6
MELO3C011729.2 Cucumis melo HOM05D005287 ORTHO05D006893 6.6e-21 106.7 77 66.2
Lj1E922T3 Lonicera japonica HOM05D005287 ORTHO05D006893 6.6e-21 106.7 83 61.4
Peaxi162Scf00016g01355 Petunia axillaris HOM05D005287 ORTHO05D006893 6.6e-21 106.7 79 62.0
Prupe.2G218100 Prunus persica HOM05D005287 ORTHO05D006893 1.1e-20 105.9 85 60.0
SHI08859 Sapria himalayana HOM05D005287 ORTHO05D006893 1.1e-20 105.9 85 61.2
arahy.Tifrunner.gnm1.ann1.VE562J Arachis hypogaea HOM05D005287 ORTHO05D006893 1.5e-20 105.5 87 58.6
Psat6g186200 Pisum sativum HOM05D005287 ORTHO05D006893 2.5e-20 104.8 79 63.3
arahy.Tifrunner.gnm1.ann1.IRN669 Arachis hypogaea HOM05D005287 ORTHO05D006893 1.2e-19 102.4 87 57.5
Cc09_g02740 Coffea canephora HOM05D005287 ORTHO05D006893 1.2e-19 102.4 67 73.1
Lj5g0006814 Lotus japonicus HOM05D005287 ORTHO05D006893 1.2e-19 102.4 83 59.0
Nitab4.5_0000061g0180 Nicotiana tabacum HOM05D005287 ORTHO05D006893 1.2e-19 102.4 67 73.1
Lalb_Chr06g0171161 Lupinus albus HOM05D005287 ORTHO05D006893 2.1e-19 101.7 79 59.5
CARHR107150 Cardamine hirsuta HOM05D005287 ORTHO05D006893 2.8e-19 101.3 86 57.0
TAR628G1500 Trochodendron aralioides HOM05D005287 ORTHO05D006893 2.8e-19 101.3 67 73.1
arahy.Tifrunner.gnm1.ann1.W4HSG5 Arachis hypogaea HOM05D005287 ORTHO05D006893 3.6e-19 100.9 87 54.0
Atru.chr12.633 Acer truncatum HOM05D005287 ORTHO05D006893 4.7e-19 100.5 88 55.7
AT2G16880 Arabidopsis thaliana HOM05D005287 ORTHO05D006893 4.7e-19 100.5 86 55.8
Ciclev10033834m.g Citrus clementina HOM05D005287 ORTHO05D006893 6.1e-19 100.1 86 57.0
Ah.16g108250 Amaranthus hybridus HOM05D005287 ORTHO05D006893 8.0e-19 99.8 79 57.0
AL3G49590 Arabidopsis lyrata HOM05D005287 ORTHO05D006893 8.0e-19 99.8 86 54.7
arahy.Tifrunner.gnm1.ann1.VJ1NN4 Arachis hypogaea HOM05D005287 ORTHO05D006893 8.0e-19 99.8 87 55.2
MSTRG.8165 Avicennia marina HOM05D005287 ORTHO05D006893 8.0e-19 99.8 87 58.6
Sc06g0001790 Simmondsia chinensis HOM05D005287 ORTHO05D006893 8.0e-19 99.8 68 67.6
arahy.Tifrunner.gnm1.ann1.K64M7Y Arachis hypogaea HOM05D005287 ORTHO05D006893 1.0e-18 99.4 87 55.2
TAR376G0736 Trochodendron aralioides HOM05D005287 ORTHO05D006893 1.8e-18 98.6 68 70.6
Aa31LG8G14080 Aethionema arabicum HOM05D005287 ORTHO05D006893 2.3e-18 98.2 86 53.5
Glyma.10G213600 Glycine max HOM05D005287 ORTHO05D006893 2.3e-18 98.2 79 59.5
Thhalv10022574m.g Eutrema salsugineum HOM05D005287 ORTHO05D006893 5.2e-18 97.1 86 55.8
Migut.F01800 Erythranthe guttata HOM05D005287 ORTHO05D006893 6.8e-18 96.7 87 57.5
DCAR_015277 Daucus carota HOM05D005287 ORTHO05D006893 8.9e-18 96.3 84 58.3
Aqoxy5G00866 Aquilegia oxysepala HOM05D005287 ORTHO05D006893 1.2e-17 95.9 79 58.2
FAN03G3353 Fragaria x ananassa HOM05D005287 ORTHO05D006893 1.2e-17 95.9 85 52.9
FvH4_7g20132 Fragaria vesca HOM05D005287 ORTHO05D006893 2.0e-17 95.1 85 52.9
FAN06G3074 Fragaria x ananassa HOM05D005287 ORTHO05D006893 2.0e-17 95.1 85 52.9
Sp3g30160 Schrenkiella parvula HOM05D005287 ORTHO05D006893 2.0e-17 95.1 86 54.7
arahy.Tifrunner.gnm1.ann1.TR9913 Arachis hypogaea HOM05D005287 ORTHO05D006893 2.6e-17 94.7 87 52.9
CAN.G588.65 Capsicum annuum HOM05D005287 ORTHO05D006893 2.6e-17 94.7 67 65.7
SGA_v2.0_scaffold122G33244 Striga asiatica HOM05D005287 ORTHO05D006893 2.6e-17 94.7 87 57.5
FAN01G0321 Fragaria x ananassa HOM05D005287 ORTHO05D006893 3.4e-17 94.4 85 52.9
MBI16_g17961_MAGBIO Magnolia biondii HOM05D005287 ORTHO05D006893 5.7e-17 93.6 85 56.5
arahy.Tifrunner.gnm1.ann1.NBNI0E Arachis hypogaea HOM05D005287 ORTHO05D006893 7.5e-17 93.2 81 55.6
COL.COLO4_23731 Corchorus olitorius HOM05D005287 ORTHO05D006893 7.5e-17 93.2 79 53.2
A07p04270 Brassica napus HOM05D005287 ORTHO05D006893 9.8e-17 92.8 86 52.3
BraA07t28218Z Brassica rapa HOM05D005287 ORTHO05D006893 9.8e-17 92.8 86 52.3
SalBow6G0018 Salvia bowleyana HOM05D005287 ORTHO05D006893 9.8e-17 92.8 75 61.3
Gohir.A04G096900 Gossypium hirsutum HOM05D005287 ORTHO05D006893 1.3e-16 92.4 79 51.9
Gohir.D04G136700 Gossypium hirsutum HOM05D005287 ORTHO05D006893 1.3e-16 92.4 79 51.9
Gorai.012G120500 Gossypium raimondii HOM05D005287 ORTHO05D006893 1.3e-16 92.4 79 51.9
PGSC0003DMG401006177 Solanum tuberosum HOM05D005287 ORTHO05D006893 1.3e-16 92.4 74 59.5
PGSC0003DMG402006177 Solanum tuberosum HOM05D005287 ORTHO05D006893 1.3e-16 92.4 74 59.5
Sopen01g053530 Solanum pennellii HOM05D005287 ORTHO05D006893 1.7e-16 92.0 74 58.1
arahy.Tifrunner.gnm1.ann1.JQA4UT Arachis hypogaea HOM05D005287 ORTHO05D006893 2.2e-16 91.7 81 55.6
BcaB03g16413 Brassica carinata HOM05D005287 ORTHO05D006893 2.9e-16 91.3 86 52.3
FAN10G3161 Fragaria x ananassa HOM05D005287 ORTHO05D006893 6.3e-16 90.1 82 52.4
Thecc.10G068400 Theobroma cacao HOM05D005287 ORTHO05D006893 6.3e-16 90.1 79 51.9
DCAR_001539 Daucus carota HOM05D005287 ORTHO05D006893 8.3e-16 89.7 85 54.1
Solyc01g111470.4 Solanum lycopersicum HOM05D005287 ORTHO05D006893 1.8e-15 88.6 74 56.8
TWI15G0219 Tripterygium wilfordii HOM05D005287 ORTHO05D006893 3.2e-15 87.8 91 52.7
AUR62020786 Chenopodium quinoa HOM05D005287 ORTHO05D006893 9.2e-15 86.3 79 50.6
AUR62027913 Chenopodium quinoa HOM05D005287 ORTHO05D006893 9.2e-15 86.3 79 50.6
AUR62043641 Chenopodium quinoa HOM05D005287 ORTHO05D006893 9.2e-15 86.3 79 50.6
Duzib114G0447 Durio zibethinus HOM05D005287 ORTHO05D006893 9.2e-15 86.3 77 50.6
Phvul.007G091900 Phaseolus vulgaris HOM05D005287 ORTHO05D006893 1.6e-14 85.5 77 55.8
PGSC0003DMG400004236 Solanum tuberosum HOM05D005287 ORTHO05D006893 1.6e-14 85.5 67 56.7
Ca_10593_v3 Cicer arietinum L. HOM05D005287 ORTHO05D006893 2.0e-14 85.1 76 51.3
PSO566G0007 Papaver somniferum HOM05D005287 ORTHO05D006893 5.9e-14 83.6 80 50.0
VMungo0720G1141 Vigna mungo HOM05D005287 ORTHO05D006893 7.8e-14 83.2 77 53.2
ECA232G3557 Erigeron canadensis HOM05D005287 ORTHO05D006893 1.7e-13 82.0 63 60.3
BcaC06g36186 Brassica carinata HOM05D005287 ORTHO05D006893 1.1e-12 79.3 86 46.5
C07p06750 Brassica napus HOM05D005287 ORTHO05D006893 1.1e-12 79.3 86 46.5
BolC7t41098H Brassica oleracea HOM05D005287 ORTHO05D006893 1.1e-12 79.3 86 46.5
PSO782G5729 Papaver somniferum HOM05D005287 ORTHO05D006893 4.3e-12 77.4 77 49.4
CDE01G0711 Ceratophyllum demersum HOM05D005287 ORTHO05D006893 7.3e-12 76.6 64 56.2
TWI63G1618 Tripterygium wilfordii HOM05D005287 ORTHO05D006893 2.1e-11 75.1 66 54.5
arahy.Tifrunner.gnm1.ann1.V5M9Y5 Arachis hypogaea HOM05D005287 ORTHO05D006893 2.8e-11 74.7 76 44.7
THA.LOC104805786 Tarenaya hassleriana HOM05D005287 ORTHO05D006893 3.6e-11 74.3 74 48.6
arahy.Tifrunner.gnm1.ann1.C25YBK Arachis hypogaea HOM05D005287 ORTHO05D006893 6.1e-11 73.6 76 42.1
arahy.Tifrunner.gnm1.ann1.SZH9K7 Arachis hypogaea HOM05D005287 ORTHO05D006893 6.1e-11 73.6 76 42.1
arahy.Tifrunner.gnm1.ann1.J60LCZ Arachis hypogaea HOM05D005287 ORTHO05D006893 1.0e-10 72.8 76 42.1
arahy.Tifrunner.gnm1.ann1.4R3XMY Arachis hypogaea HOM05D005287 ORTHO05D006893 8.9e-10 69.7 69 46.4
Cpa.g.sc53.25 Carica papaya HOM05D005287 ORTHO05D006893 9.8e-09 66.2 86 40.7
Hma1.2p1_0137F.1_g062540 Hydrangea macrophylla HOM05D049318 ORTHO05D006893 4.1e-07 60.8 63 47.6
Hma1.2p1_0556F.1_g178055 Hydrangea macrophylla HOM05D049318 ORTHO05D006893 4.1e-07 60.8 63 47.6
arahy.Tifrunner.gnm1.ann1.XEFQ2J Arachis hypogaea HOM05D005287 ORTHO05D006893 9.2e-07 59.7 70 44.3
HPP92_023661 Vanilla planifolia HOM05D005287 ORTHO05D006893 9.2e-07 59.7 75 44.0
Zm00001eb007770 Zea mays HOM05D005287 ORTHO05D006893 9.2e-07 59.7 65 44.6
arahy.Tifrunner.gnm1.ann1.KL2II8 Arachis hypogaea HOM05D005287 ORTHO05D006893 1.6e-06 58.9 70 42.9
HPP92_023662 Vanilla planifolia HOM05D023777 ORTHO05D031065 1.6e-06 58.9 56 44.6
arahy.Tifrunner.gnm1.ann1.DD86YU Arachis hypogaea HOM05D005287 ORTHO05D006893 2.0e-06 58.5 70 42.9
Os03g0201400 Oryza sativa ssp. japonica HOM05D005287 ORTHO05D006893 3.5e-06 57.8 48 52.1
arahy.Tifrunner.gnm1.ann1.HZQS8U Arachis hypogaea HOM05D005287 ORTHO05D006893 6.0e-06 57.0 76 38.2


User provided reference genes

Program Settings