Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048120 Camellia sinensis var. sinensis HOM05D003793 ORTHO05D004471 6.1e-85 317.4 153 100.0
CSS0037165 Camellia sinensis var. sinensis HOM05D003793 ORTHO05D004471 7.0e-65 250.8 160 80.0
vmacro09916 Vaccinium macrocarpon HOM05D003793 ORTHO05D004471 8.9e-28 127.5 265 34.3
vmacro22191 Vaccinium macrocarpon HOM05D003793 ORTHO05D004471 5.6e-22 108.2 206 35.9
Actinidia33800 Actinidia chinensis HOM05D003793 ORTHO05D004471 1.4e-20 103.6 196 36.2
QL09p020551 Quercus lobata HOM05D003793 ORTHO05D004471 1.8e-20 103.2 205 35.1
Dinv29122 Davidia involucrata HOM05D003793 ORTHO05D004471 2.3e-20 102.8 206 34.5
Medtr4g036005 Medicago truncatula HOM05D003793 ORTHO05D004471 5.2e-20 101.7 130 43.8
Rhsim09G0190300 Rhododendron simsii HOM05D003793 ORTHO05D004471 8.9e-20 100.9 206 34.0
Nitab4.5_0004045g0040 Nicotiana tabacum HOM05D003793 ORTHO05D004471 2.6e-19 99.4 196 33.2
Cc11_g00040 Coffea canephora HOM05D003793 ORTHO05D004471 3.4e-19 99.0 208 34.6
Actinidia34215 Actinidia chinensis HOM05D003793 ORTHO05D004471 4.4e-19 98.6 225 32.4
Nitab4.5_0000411g0010 Nicotiana tabacum HOM05D003793 ORTHO05D004471 5.8e-19 98.2 206 32.0
Lsat_1_v5_gn_8_24121 Lactuca sativa HOM05D003793 ORTHO05D004471 7.5e-19 97.8 206 32.5
Solyc08g076360.4 Solanum lycopersicum HOM05D003793 ORTHO05D004471 7.5e-19 97.8 206 32.0
CiPaw.05G212400 Carya illinoinensis HOM05D003793 ORTHO05D004471 9.8e-19 97.4 197 35.5
CAN.G726.8 Capsicum annuum HOM05D003793 ORTHO05D004471 1.3e-18 97.1 206 32.0
Duzib177G0459 Durio zibethinus HOM05D003793 ORTHO05D004471 1.3e-18 97.1 195 34.9
QL09p020586 Quercus lobata HOM05D003793 ORTHO05D004471 1.3e-18 97.1 195 35.4
Haze_00367 Corylus avellana HOM05D003793 ORTHO05D004471 1.7e-18 96.7 195 35.9
Nn1g09155 Nelumbo nucifera HOM05D003793 ORTHO05D004471 1.7e-18 96.7 194 36.6
Lsat_1_v5_gn_2_104420 Lactuca sativa HOM05D003793 ORTHO05D004471 2.2e-18 96.3 208 34.1
Ciclev10005360m.g Citrus clementina HOM05D003793 ORTHO05D004471 2.9e-18 95.9 206 33.0
Ciclev10032026m.g Citrus clementina HOM05D003793 ORTHO05D004471 2.9e-18 95.9 206 33.0
Gorai.003G058100 Gossypium raimondii HOM05D003793 ORTHO05D004471 3.7e-18 95.5 196 35.2
Thecc.05G223100 Theobroma cacao HOM05D003793 ORTHO05D004471 3.7e-18 95.5 217 34.1
TAR375G0772 Trochodendron aralioides HOM05D003793 ORTHO05D004471 4.9e-18 95.1 192 33.9
GSVIVG01024322001 Vitis vinifera HOM05D003793 ORTHO05D004471 4.9e-18 95.1 193 37.3
ECA238G4812 Erigeron canadensis HOM05D003793 ORTHO05D004471 8.3e-18 94.4 185 35.1
Gorai.013G184400 Gossypium raimondii HOM05D003793 ORTHO05D004471 1.1e-17 94.0 195 34.9
Gohir.D13G162300 Gossypium hirsutum HOM05D003793 ORTHO05D004471 1.4e-17 93.6 195 34.9
CDE11G0124 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 1.9e-17 93.2 206 32.0
Glyma.09G222800 Glycine max HOM05D003793 ORTHO05D004471 1.9e-17 93.2 197 35.5
MD12G1017400 Malus domestica HOM05D003793 ORTHO05D004471 1.9e-17 93.2 193 33.2
AUR62002095 Chenopodium quinoa HOM05D003793 ORTHO05D004471 2.4e-17 92.8 154 36.4
Cfa016078 Carpinus fangiana HOM05D003793 ORTHO05D004471 3.2e-17 92.4 195 33.3
Lj3A883G46 Lonicera japonica HOM05D003793 ORTHO05D004471 3.2e-17 92.4 206 31.6
AUR62028213 Chenopodium quinoa HOM05D003793 ORTHO05D004471 4.1e-17 92.0 196 34.2
Hma1.2p1_0419F.1_g149530 Hydrangea macrophylla HOM05D003793 ORTHO05D004471 4.1e-17 92.0 195 32.8
Lj3g0009427 Lotus japonicus HOM05D003793 ORTHO05D004471 4.1e-17 92.0 208 33.2
HanXRQChr11g0342111 Helianthus annuus HOM05D003793 ORTHO05D004471 5.4e-17 91.7 208 32.7
HanXRQChr08g0217471 Helianthus annuus HOM05D003793 ORTHO05D004471 7.1e-17 91.3 206 31.6
Sabra13G0066000 Salix brachista HOM05D003793 ORTHO05D004471 7.1e-17 91.3 197 34.0
Ah.04g156140 Amaranthus hybridus HOM05D003793 ORTHO05D004471 9.2e-17 90.9 191 34.0
Gohir.A13G157500 Gossypium hirsutum HOM05D003793 ORTHO05D004471 9.2e-17 90.9 196 34.2
TPR.G38857 Trifolium pratense HOM05D003793 ORTHO05D004471 9.2e-17 90.9 195 34.9
TWI60G0578 Tripterygium wilfordii HOM05D003793 ORTHO05D004471 9.2e-17 90.9 191 32.5
FAN05G4652 Fragaria x ananassa HOM05D003793 ORTHO05D004471 1.2e-16 90.5 197 32.5
Glyma.12G014200 Glycine max HOM05D003793 ORTHO05D004471 1.2e-16 90.5 193 36.3
Ca_13083_v3 Cicer arietinum L. HOM05D003793 ORTHO05D004471 1.6e-16 90.1 191 35.1
Prupe.7G118300 Prunus persica HOM05D003793 ORTHO05D004471 1.6e-16 90.1 195 34.4
Aqoxy6G01753 Aquilegia oxysepala HOM05D003793 ORTHO05D004471 2.1e-16 89.7 200 34.5
Duzib106G1724 Durio zibethinus HOM05D003793 ORTHO05D004471 2.1e-16 89.7 195 33.3
MD14G1015100 Malus domestica HOM05D003793 ORTHO05D004471 2.1e-16 89.7 193 32.6
Psat6g024400 Pisum sativum HOM05D003793 ORTHO05D004471 2.1e-16 89.7 220 32.3
ECA233G1952 Erigeron canadensis HOM05D003793 ORTHO05D004471 2.7e-16 89.4 206 30.6
FAN02G3282 Fragaria x ananassa HOM05D003793 ORTHO05D004471 2.7e-16 89.4 195 32.8
FAN05G0338 Fragaria x ananassa HOM05D003793 ORTHO05D004471 2.7e-16 89.4 195 32.8
Gohir.A02G114300 Gossypium hirsutum HOM05D003793 ORTHO05D004471 2.7e-16 89.4 196 35.2
Sc13g0011010 Simmondsia chinensis HOM05D003793 ORTHO05D004471 3.5e-16 89.0 193 34.2
arahy.Tifrunner.gnm1.ann1.TXPN3Z Arachis hypogaea HOM05D003793 ORTHO05D004471 4.6e-16 88.6 193 35.2
COL.COLO4_15127 Corchorus olitorius HOM05D003793 ORTHO05D004471 4.6e-16 88.6 206 31.6
Phvul.011G017100 Phaseolus vulgaris HOM05D003793 ORTHO05D004471 4.6e-16 88.6 208 33.2
Os02g0701600 Oryza sativa ssp. japonica HOM05D003793 ORTHO05D004471 6.0e-16 88.2 206 31.6
Hund26874 Selenicereus undatus HOM05D003793 ORTHO05D004471 6.0e-16 88.2 197 32.5
THA.LOC104821707 Tarenaya hassleriana HOM05D003793 ORTHO05D004471 6.0e-16 88.2 190 33.2
Duzib177G0347 Durio zibethinus HOM05D003793 ORTHO05D004471 7.8e-16 87.8 195 32.8
FvH4_6g17810 Fragaria vesca HOM05D003793 ORTHO05D004471 7.8e-16 87.8 195 32.8
Gohir.D03G055300 Gossypium hirsutum HOM05D003793 ORTHO05D004471 7.8e-16 87.8 196 34.7
PSO210G3154 Papaver somniferum HOM05D003793 ORTHO05D004471 7.8e-16 87.8 190 33.7
Potri.013G077000 Populus trichocarpa HOM05D003793 ORTHO05D004471 7.8e-16 87.8 208 31.7
HanXRQChr08g0217461 Helianthus annuus HOM05D003793 ORTHO05D004471 1.0e-15 87.4 191 32.5
HanXRQChr08g0217581 Helianthus annuus HOM05D003793 ORTHO05D004471 1.0e-15 87.4 191 32.5
arahy.Tifrunner.gnm1.ann1.SYC9J3 Arachis hypogaea HOM05D003793 ORTHO05D004471 1.3e-15 87.0 193 34.7
Lalb_Chr05g0211181 Lupinus albus HOM05D003793 ORTHO05D004471 1.3e-15 87.0 193 35.2
Migut.J00551 Erythranthe guttata HOM05D003793 ORTHO05D004471 1.7e-15 86.7 206 29.1
Medtr1g014690 Medicago truncatula HOM05D003793 ORTHO05D004471 1.7e-15 86.7 193 34.2
PSO210G3487 Papaver somniferum HOM05D003793 ORTHO05D004471 1.7e-15 86.7 190 33.2
arahy.Tifrunner.gnm1.ann1.L925XS Arachis hypogaea HOM05D003793 ORTHO05D004471 3.0e-15 85.9 193 34.7
Glyma.12G014300 Glycine max HOM05D003793 ORTHO05D004471 3.0e-15 85.9 194 34.5
Manes.08G160400 Manihot esculenta HOM05D003793 ORTHO05D004471 3.0e-15 85.9 197 33.0
VMungo1127G2010 Vigna mungo HOM05D003793 ORTHO05D004471 3.0e-15 85.9 208 32.7
Zm00001eb251860 Zea mays HOM05D003793 ORTHO05D004471 3.0e-15 85.9 194 32.5
Atru.chr12.1860 Acer truncatum HOM05D003793 ORTHO05D004471 3.9e-15 85.5 208 30.3
unitig_578.g15801 Utricularia gibba HOM05D003793 ORTHO05D004471 6.6e-15 84.7 191 33.0
VMungo1127G0200 Vigna mungo HOM05D003793 ORTHO05D004471 6.6e-15 84.7 194 34.5
arahy.Tifrunner.gnm1.ann1.5NG4EY Arachis hypogaea HOM05D003793 ORTHO05D004471 8.6e-15 84.3 193 34.2
PGR142G3821 Punica granatum HOM05D003793 ORTHO05D004471 8.6e-15 84.3 214 31.3
CDE12G0793 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 1.1e-14 84.0 193 32.1
Sed0025175 Sechium edule HOM05D003793 ORTHO05D004471 1.1e-14 84.0 188 32.4
Aqoxy6G01754 Aquilegia oxysepala HOM05D003793 ORTHO05D004471 1.5e-14 83.6 189 31.7
EL10Ac3g05040 Beta vulgaris HOM05D003793 ORTHO05D004471 1.5e-14 83.6 190 30.5
Carub.0002s1011 Capsella rubella HOM05D003793 ORTHO05D004471 1.5e-14 83.6 214 32.2
AL2G19520 Arabidopsis lyrata HOM05D003793 ORTHO05D004471 1.9e-14 83.2 214 31.8
SGA_v2.0_scaffold126G33927 Striga asiatica HOM05D003793 ORTHO05D004471 2.5e-14 82.8 195 30.3
Phvul.011G017200 Phaseolus vulgaris HOM05D003793 ORTHO05D004471 3.3e-14 82.4 192 33.3
HPP92_022760 Vanilla planifolia HOM05D003793 ORTHO05D004471 3.3e-14 82.4 196 32.7
RcHm_v2.0_Chr3g0472061 Rosa chinensis HOM05D003793 ORTHO05D004471 4.3e-14 82.0 187 32.6
CARHR056370 Cardamine hirsuta HOM05D003793 ORTHO05D004471 5.6e-14 81.6 211 31.8
FAN14G1236 Fragaria x ananassa HOM05D003793 ORTHO05D004471 5.6e-14 81.6 167 34.1
Atru.chr12.1866 Acer truncatum HOM05D003793 ORTHO05D004471 7.3e-14 81.3 208 29.8
HPP92_027670 Vanilla planifolia HOM05D003793 ORTHO05D004471 9.5e-14 80.9 206 30.1
AT1G64970 Arabidopsis thaliana HOM05D003793 ORTHO05D004471 1.2e-13 80.5 214 30.8
Thhalv10018768m.g Eutrema salsugineum HOM05D003793 ORTHO05D004471 1.2e-13 80.5 191 30.4
SalBow3G2252 Salvia bowleyana HOM05D003793 ORTHO05D004471 1.2e-13 80.5 60 60.0
Aa31LG2G2160 Aethionema arabicum HOM05D003793 ORTHO05D004471 1.6e-13 80.1 212 30.2
BcaB05g24071 Brassica carinata HOM05D003793 ORTHO05D004471 1.6e-13 80.1 214 30.8
BcaC03g16025 Brassica carinata HOM05D003793 ORTHO05D004471 1.6e-13 80.1 214 30.8
A02p12940 Brassica napus HOM05D003793 ORTHO05D004471 1.6e-13 80.1 214 30.8
C02p37750 Brassica napus HOM05D003793 ORTHO05D004471 1.6e-13 80.1 214 30.8
BolC2t09793H Brassica oleracea HOM05D003793 ORTHO05D004471 1.6e-13 80.1 214 30.8
BraA02t06348Z Brassica rapa HOM05D003793 ORTHO05D004471 1.6e-13 80.1 214 30.8
BraA02t07388Z Brassica rapa HOM05D003793 ORTHO05D004471 1.6e-13 80.1 214 30.8
Sp5g19260 Schrenkiella parvula HOM05D003793 ORTHO05D004471 1.6e-13 80.1 214 30.8
ClCG02G007700 Citrullus lanatus HOM05D003793 ORTHO05D004471 2.1e-13 79.7 187 33.2
CsaV3_2G036010 Cucumis sativus L. HOM05D003793 ORTHO05D004471 3.6e-13 79.0 187 31.0
C02p21050 Brassica napus HOM05D003793 ORTHO05D004471 4.7e-13 78.6 214 30.4
Nitab4.5_0001475g0030 Nicotiana tabacum HOM05D003793 ORTHO05D004471 4.7e-13 78.6 73 49.3
THA.LOC104805718 Tarenaya hassleriana HOM05D003793 ORTHO05D004471 4.7e-13 78.6 193 31.6
Aa31LG2G2170 Aethionema arabicum HOM05D003793 ORTHO05D004471 6.2e-13 78.2 212 29.7
Eucgr.K00068 Eucalyptus grandis HOM05D003793 ORTHO05D004471 8.1e-13 77.8 214 31.3
CANSAT21G0915 Cannabis sativa HOM05D003793 ORTHO05D004471 1.1e-12 77.4 188 32.4
Rhsim09G0214000 Rhododendron simsii HOM05D003793 ORTHO05D004471 1.1e-12 77.4 100 43.0
BcaC03g14668 Brassica carinata HOM05D003793 ORTHO05D004471 1.4e-12 77.0 217 30.0
BolC2t08246H Brassica oleracea HOM05D003793 ORTHO05D004471 1.4e-12 77.0 214 29.9
CDE02G3720 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 1.4e-12 77.0 191 30.9
A02p23940 Brassica napus HOM05D003793 ORTHO05D004471 2.3e-12 76.3 212 30.2
MELO3C024736.2 Cucumis melo HOM05D003793 ORTHO05D004471 2.3e-12 76.3 187 31.0
Pp3c11_23800 Physcomitrium patens HOM05D003793 ORTHO05D004471 6.8e-12 74.7 206 27.2
SEGI_24486 Sequoiadendron giganteum HOM05D003793 ORTHO05D004471 6.8e-12 74.7 206 28.6
AagrBONN_evm.TU.Sc2ySwM_362.1718 Anthoceros agrestis HOM05D003793 ORTHO05D004471 1.2e-11 73.9 208 26.0
Oeu001351.2 Olea europaea HOM05D003793 ORTHO05D004471 1.2e-11 73.9 65 53.8
ATR0829G208 Amborella trichopoda HOM05D003793 ORTHO05D004471 1.5e-11 73.6 191 30.4
Cpa.g.sc43.146 Carica papaya HOM05D003793 ORTHO05D004471 1.5e-11 73.6 67 53.7
Mapoly0025s0046 Marchantia polymorpha HOM05D003793 ORTHO05D004471 2.6e-11 72.8 206 25.2
Nn3g21149 Nelumbo nucifera HOM05D003793 ORTHO05D004471 3.4e-11 72.4 212 29.2
FAN09G3950 Fragaria x ananassa HOM05D003793 ORTHO05D004471 7.6e-11 71.2 65 52.3
MSTRG.5738 Avicennia marina HOM05D003793 ORTHO05D004471 9.9e-11 70.9 65 49.2
Oeu027984.2 Olea europaea HOM05D003793 ORTHO05D004471 1.7e-10 70.1 100 42.0
SMO145G0054 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 3.8e-10 68.9 206 27.7
CDE01G0103 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 1.2e-08 63.9 65 41.5
Mapoly0921s0001 Marchantia polymorpha HOM05D003793 ORTHO05D004471 1.2e-08 63.9 190 25.3
MCO16G568 Micromonas commoda HOM05D003793 ORTHO05D004471 1.2e-08 63.9 187 27.3
HPP92_027662 Vanilla planifolia HOM05D003793 ORTHO05D004471 1.2e-08 63.9 100 39.0
SalBow3G1300 Salvia bowleyana HOM05D003793 ORTHO05D004471 2.1e-08 63.2 36 69.4
CDE11G0369 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 2.7e-08 62.8 37 67.6
Hund00468 Selenicereus undatus HOM05D003793 ORTHO05D004471 2.7e-08 62.8 113 38.1
ATR0829G050 Amborella trichopoda HOM05D003793 ORTHO05D004471 7.8e-08 61.2 189 24.3
SMO119G0398 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 1.3e-07 60.5 101 31.7
Hund00469 Selenicereus undatus HOM05D003793 ORTHO05D004471 1.3e-07 60.5 88 39.8
Nitab4.5_0006250g0010 Nicotiana tabacum HOM05D003793 ORTHO05D004471 1.7e-07 60.1 59 54.2
PGR142G2095 Punica granatum HOM05D003793 ORTHO05D004471 1.7e-07 60.1 192 27.1
PGR142G4176 Punica granatum HOM05D003793 ORTHO05D004471 2.3e-07 59.7 192 28.1
Cc00_g27150 Coffea canephora HOM05D003793 ORTHO05D004471 8.6e-07 57.8 61 45.9
PGR142G3948 Punica granatum HOM05D003793 ORTHO05D004471 3.3e-06 55.8 192 27.1
SalBow3G2197 Salvia bowleyana HOM05D003793 ORTHO05D004471 3.3e-06 55.8 68 45.6
SMO115G0333 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 5.6e-06 55.1 87 33.3
SMO119G0172 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 5.6e-06 55.1 87 33.3
CBR_g28039 Chara braunii HOM05D003793 ORTHO05D004471 7.3e-06 54.7 69 34.8


User provided reference genes

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