Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048119 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 1.5e-248 862.4 450 100.0
CSS0020882 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 1.8e-246 855.5 450 99.3
Rhsim01G0190000 Rhododendron simsii HOM05D006039 ORTHO05D006797 1.2e-160 570.5 459 70.4
Dinv36292 Davidia involucrata HOM05D006039 ORTHO05D006797 2.9e-159 565.8 465 70.3
Actinidia06328 Actinidia chinensis HOM05D006039 ORTHO05D006797 3.2e-150 535.8 458 66.2
TAR623G0385 Trochodendron aralioides HOM05D006039 ORTHO05D006797 9.0e-129 464.5 465 58.3
Lj1C361T2 Lonicera japonica HOM05D006039 ORTHO05D006797 2.9e-127 459.5 461 60.3
vmacro12713 Vaccinium macrocarpon HOM05D006039 ORTHO05D006797 4.2e-126 455.7 462 60.8
Atru.chr3.2554 Acer truncatum HOM05D006039 ORTHO05D006797 3.9e-124 449.1 473 57.9
Eucgr.B03667 Eucalyptus grandis HOM05D006039 ORTHO05D006797 6.7e-124 448.4 463 55.3
Nitab4.5_0000175g0040 Nicotiana tabacum HOM05D006039 ORTHO05D006797 5.7e-123 445.3 445 58.4
TWI32G0154 Tripterygium wilfordii HOM05D006039 ORTHO05D006797 1.1e-121 441.0 462 57.6
QL01p005703 Quercus lobata HOM05D006039 ORTHO05D006797 5.3e-121 438.7 483 55.1
Sc16g0011650 Simmondsia chinensis HOM05D006039 ORTHO05D006797 1.4e-118 430.6 472 55.7
Thecc.09G226300 Theobroma cacao HOM05D006039 ORTHO05D006797 9.4e-118 427.9 451 57.0
Aqoxy3G00443 Aquilegia oxysepala HOM05D006039 ORTHO05D006797 6.1e-117 425.2 464 52.4
Solyc11g056640.3 Solanum lycopersicum HOM05D006039 ORTHO05D006797 1.0e-116 424.5 466 55.6
Nitab4.5_0002278g0050 Nicotiana tabacum HOM05D006039 ORTHO05D006797 1.4e-116 424.1 469 55.0
GSVIVG01025314001 Vitis vinifera HOM05D006039 ORTHO05D006797 1.4e-116 424.1 405 63.5
Haze_23073 Corylus avellana HOM05D006039 ORTHO05D006797 3.9e-116 422.5 455 57.4
Manes.06G167800 Manihot esculenta HOM05D006039 ORTHO05D006797 4.1e-113 412.5 444 57.2
Cc01_g04400 Coffea canephora HOM05D006039 ORTHO05D006797 1.5e-112 410.6 471 55.2
MBI01_g36435_MAGBIO Magnolia biondii HOM05D006039 ORTHO05D006797 2.2e-111 406.8 468 53.4
CiPaw.14G122300 Carya illinoinensis HOM05D006039 ORTHO05D006797 3.8e-111 406.0 417 57.6
ClCG02G023440 Citrullus lanatus HOM05D006039 ORTHO05D006797 3.6e-109 399.4 467 51.2
PSO339G2813 Papaver somniferum HOM05D006039 ORTHO05D006797 1.0e-108 397.9 465 53.1
CANSAT54G2219 Cannabis sativa HOM05D006039 ORTHO05D006797 1.8e-108 397.1 469 53.9
Duzib168G2100 Durio zibethinus HOM05D006039 ORTHO05D006797 2.3e-108 396.7 454 54.6
Potri.001G017100 Populus trichocarpa HOM05D006039 ORTHO05D006797 3.9e-108 396.0 450 56.4
MELO3C014616.2 Cucumis melo HOM05D006039 ORTHO05D006797 8.8e-108 394.8 457 51.6
Peaxi162Scf00839g00234 Petunia axillaris HOM05D006039 ORTHO05D006797 8.8e-108 394.8 444 56.3
Sabra01G0012000 Salix brachista HOM05D006039 ORTHO05D006797 8.8e-108 394.8 463 55.5
CsaV3_4G024070 Cucumis sativus L. HOM05D006039 ORTHO05D006797 1.1e-107 394.4 465 50.5
Nn7g36093 Nelumbo nucifera HOM05D006039 ORTHO05D006797 1.1e-107 394.4 452 52.0
MSTRG.17577 Avicennia marina HOM05D006039 ORTHO05D006797 7.4e-107 391.7 419 56.6
Manes.14G013400 Manihot esculenta HOM05D006039 ORTHO05D006797 9.7e-107 391.3 447 53.9
Potri.003G207400 Populus trichocarpa HOM05D006039 ORTHO05D006797 2.2e-106 390.2 448 55.4
Ciclev10014934m.g Citrus clementina HOM05D006039 ORTHO05D006797 4.8e-106 389.0 520 49.4
Lj3g0020392 Lotus japonicus HOM05D006039 ORTHO05D006797 1.4e-105 387.5 445 54.8
Sed0010144 Sechium edule HOM05D006039 ORTHO05D006797 1.4e-105 387.5 462 52.6
Lsat_1_v5_gn_1_67181 Lactuca sativa HOM05D006039 ORTHO05D006797 1.8e-105 387.1 469 52.7
Cpa.g.sc84.90 Carica papaya HOM05D006039 ORTHO05D006797 9.1e-105 384.8 461 52.9
Prupe.6G022100 Prunus persica HOM05D006039 ORTHO05D006797 9.1e-105 384.8 417 57.3
PSO384G3161 Papaver somniferum HOM05D006039 ORTHO05D006797 7.7e-104 381.7 465 51.6
SalBow4G0075 Salvia bowleyana HOM05D006039 ORTHO05D006797 2.2e-103 380.2 466 53.0
SalBow4G2759 Salvia bowleyana HOM05D006039 ORTHO05D006797 2.2e-103 380.2 466 53.0
COL.COLO4_24829 Corchorus olitorius HOM05D006039 ORTHO05D006797 3.8e-103 379.4 448 51.3
MD11G1028000 Malus domestica HOM05D006039 ORTHO05D006797 5.0e-103 379.0 504 50.8
Oeu014066.1 Olea europaea HOM05D006039 ORTHO05D006797 1.1e-102 377.9 421 56.1
PGR102G2927 Punica granatum HOM05D006039 ORTHO05D006797 1.0e-100 371.3 467 52.0
Duzib150G0354 Durio zibethinus HOM05D006039 ORTHO05D006797 6.7e-100 368.6 451 51.9
Gohir.A13G216000 Gossypium hirsutum HOM05D006039 ORTHO05D006797 2.0e-99 367.1 425 55.3
THA.LOC104804971 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 3.3e-99 366.3 445 51.7
ECA233G1597 Erigeron canadensis HOM05D006039 ORTHO05D006797 2.2e-98 363.6 463 51.6
HanXRQChr13g0403991 Helianthus annuus HOM05D006039 ORTHO05D006797 2.2e-98 363.6 447 51.5
MSTRG.12478 Avicennia marina HOM05D006039 ORTHO05D006797 4.8e-98 362.5 460 50.2
VMungo1080G1590 Vigna mungo HOM05D006039 ORTHO05D006797 4.8e-98 362.5 447 52.6
Migut.N02301 Erythranthe guttata HOM05D006039 ORTHO05D006797 8.2e-98 361.7 460 51.3
EL10Ac4g10308 Beta vulgaris HOM05D006039 ORTHO05D006797 1.4e-97 360.9 464 50.4
Lalb_Chr24g0396971 Lupinus albus HOM05D006039 ORTHO05D006797 3.5e-96 356.3 448 51.6
Glyma.15G032500 Glycine max HOM05D006039 ORTHO05D006797 7.7e-96 355.1 466 52.4
Lalb_Chr22g0352291 Lupinus albus HOM05D006039 ORTHO05D006797 2.9e-95 353.2 438 52.3
Medtr2g098330 Medicago truncatula HOM05D006039 ORTHO05D006797 6.5e-95 352.1 449 49.4
Glyma.13G341800 Glycine max HOM05D006039 ORTHO05D006797 8.5e-95 351.7 474 49.4
FAN11G0272 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.9e-94 350.5 407 54.1
Gohir.D13G219700 Gossypium hirsutum HOM05D006039 ORTHO05D006797 3.2e-94 349.7 425 53.9
FAN25G3739 Fragaria x ananassa HOM05D006039 ORTHO05D006797 9.4e-94 348.2 419 52.5
Phvul.L011043 Phaseolus vulgaris HOM05D006039 ORTHO05D006797 9.4e-94 348.2 428 52.6
Ah.06g193560 Amaranthus hybridus HOM05D006039 ORTHO05D006797 1.6e-93 347.4 468 49.1
SGA_v2.0_scaffold247G44833 Striga asiatica HOM05D006039 ORTHO05D006797 3.6e-93 346.3 492 48.0
DCAR_002046 Daucus carota HOM05D006039 ORTHO05D006797 4.7e-93 345.9 451 49.7
FAN21G1726 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.4e-92 344.4 397 53.9
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 4.0e-92 342.8 445 49.2
RcHm_v2.0_Chr5g0077351 Rosa chinensis HOM05D006039 ORTHO05D006797 2.6e-91 340.1 441 50.6
Psat5g288280 Pisum sativum HOM05D006039 ORTHO05D006797 2.8e-90 336.7 509 46.0
Cfa009721 Carpinus fangiana HOM05D006039 ORTHO05D006797 2.7e-88 330.1 304 61.8
arahy.Tifrunner.gnm1.ann1.CQR7QS Arachis hypogaea HOM05D006039 ORTHO05D006797 5.9e-88 328.9 440 49.8
Sp6g31030 Schrenkiella parvula HOM05D006039 ORTHO05D006797 5.0e-87 325.9 355 53.8
THA.LOC104799094 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 8.5e-87 325.1 464 47.8
CARHR200520 Cardamine hirsuta HOM05D006039 ORTHO05D006797 1.2e-85 321.2 475 46.5
Thhalv10013519m.g Eutrema salsugineum HOM05D006039 ORTHO05D006797 3.6e-85 319.7 465 46.9
Migut.D00567 Erythranthe guttata HOM05D006039 ORTHO05D006797 2.3e-84 317.0 456 48.7
AL6G23500 Arabidopsis lyrata HOM05D006039 ORTHO05D006797 3.0e-84 316.6 466 46.8
Carub.0006s1111 Capsella rubella HOM05D006039 ORTHO05D006797 9.8e-83 311.6 467 46.0
AUR62019256 Chenopodium quinoa HOM05D006039 ORTHO05D006797 6.3e-82 308.9 470 46.0
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.4e-81 307.0 388 51.3
AT5G12930 Arabidopsis thaliana HOM05D006039 ORTHO05D006797 3.5e-80 303.1 375 50.1
Hund07543 Selenicereus undatus HOM05D006039 ORTHO05D006797 2.5e-78 297.0 290 57.6
FAN16G1487 Fragaria x ananassa HOM05D006039 ORTHO05D006797 2.8e-77 293.5 347 53.0
Nn2g15509 Nelumbo nucifera HOM05D006039 ORTHO05D006797 1.4e-76 291.2 342 50.3
arahy.Tifrunner.gnm1.ann1.IJ2E5N Arachis hypogaea HOM05D006039 ORTHO05D006797 1.2e-75 288.1 437 45.3
BraA03t09909Z Brassica rapa HOM05D006039 ORTHO05D006797 2.6e-75 287.0 468 44.2
AUR62005725 Chenopodium quinoa HOM05D006039 ORTHO05D006797 5.7e-75 285.8 460 44.3
BolC3t13172H Brassica oleracea HOM05D006039 ORTHO05D006797 1.7e-74 284.3 470 43.4
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 2.8e-74 283.5 462 44.2
A03p05700 Brassica napus HOM05D006039 ORTHO05D006797 2.9e-71 273.5 466 42.7
Potri.003G207500 Populus trichocarpa HOM05D006039 ORTHO05D006797 2.5e-70 270.4 439 45.8
C03p06660 Brassica napus HOM05D006039 ORTHO05D006797 2.8e-69 266.9 362 48.6
A02p01580 Brassica napus HOM05D006039 ORTHO05D006797 3.6e-69 266.5 468 43.2
BraA02t05138Z Brassica rapa HOM05D006039 ORTHO05D006797 8.0e-69 265.4 357 49.0
HPP92_015767 Vanilla planifolia HOM05D006039 ORTHO05D006797 2.3e-68 263.8 433 42.3
Actinidia39388 Actinidia chinensis HOM05D006039 ORTHO05D006797 3.1e-68 263.5 247 60.7
BcaNung03603 Brassica carinata HOM05D006039 ORTHO05D006797 3.1e-68 263.5 463 43.8
Ca_01279_v3 Cicer arietinum L. HOM05D006039 ORTHO05D006797 7.5e-67 258.8 338 49.7
Os09g0488600 Oryza sativa ssp. japonica HOM05D006039 ORTHO05D006797 4.9e-66 256.1 438 42.9
BcaB01g05389 Brassica carinata HOM05D006039 ORTHO05D006797 3.3e-62 243.4 360 45.3
FvH4_3g43290 Fragaria vesca HOM05D006039 ORTHO05D006797 3.3e-62 243.4 292 52.4
Sabra03G0153000 Salix brachista HOM05D006039 ORTHO05D006797 2.8e-61 240.4 437 43.7
TPR.G6898 Trifolium pratense HOM05D006039 ORTHO05D006797 6.4e-58 229.2 353 45.3
BcaNung01186 Brassica carinata HOM05D006039 ORTHO05D006797 1.6e-56 224.6 459 39.9
BolC2t06525H Brassica oleracea HOM05D006039 ORTHO05D006797 1.6e-56 224.6 459 39.9
Haze_23654 Corylus avellana HOM05D006039 ORTHO05D006797 1.6e-56 224.6 228 58.8
Haze_23698 Corylus avellana HOM05D006039 ORTHO05D006797 3.3e-54 216.9 204 59.3
Haze_23701 Corylus avellana HOM05D006039 ORTHO05D006797 1.2e-53 214.9 294 49.3
ATR0815G050 Amborella trichopoda HOM05D006039 ORTHO05D006797 1.6e-53 214.5 471 37.8
Haze_23653 Corylus avellana HOM05D006039 ORTHO05D006797 1.6e-53 214.5 254 53.9
C02p05800 Brassica napus HOM05D006039 ORTHO05D006797 4.7e-53 213.0 356 42.1
Haze_23655 Corylus avellana HOM05D006039 ORTHO05D006797 4.7e-53 213.0 311 48.2
Haze_23656 Corylus avellana HOM05D006039 ORTHO05D006797 3.1e-52 210.3 365 43.8
AUR62043683 Chenopodium quinoa HOM05D006039 ORTHO05D006797 4.4e-51 206.5 317 46.7
Zm00001eb101890 Zea mays HOM05D006039 ORTHO05D006797 7.6e-51 205.7 318 43.4
AUR62043578 Chenopodium quinoa HOM05D006039 ORTHO05D006797 5.4e-49 199.5 274 46.0
CDE06G0903 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 1.1e-41 175.3 317 40.1
Haze_23699 Corylus avellana HOM05D006039 ORTHO05D006797 1.9e-41 174.5 175 56.6
Cfa009719 Carpinus fangiana HOM05D006039 ORTHO05D006797 7.1e-41 172.6 221 52.5
AUR62000084 Chenopodium quinoa HOM05D006039 ORTHO05D000067 2.8e-37 160.6 156 59.0
MELO3C003056.2 Cucumis melo HOM05D006039 ORTHO05D006797 4.8e-37 159.8 159 54.1
SHI30498 Sapria himalayana HOM05D006039 ORTHO05D000001 4.8e-37 159.8 469 29.6
TPR.G377 Trifolium pratense HOM05D006039 ORTHO05D006797 6.0e-32 142.9 141 56.7
AUR62014261 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.2e-27 128.6 236 40.7
Hund07487 Selenicereus undatus HOM05D000288 ORTHO05D006797 5.6e-22 109.8 182 46.2
Hund07491 Selenicereus undatus HOM05D006039 ORTHO05D006797 9.6e-22 109.0 166 49.4
Lsat_1_v5_gn_1_67161 Lactuca sativa HOM05D006039 ORTHO05D006797 4.2e-17 93.6 87 62.1
Pp3c20_22990 Physcomitrium patens HOM05D022188 ORTHO05D006797 2.0e-11 74.7 92 44.6
SEGI_29391 Sequoiadendron giganteum HOM05D022188 ORTHO05D006797 2.6e-11 74.3 122 38.5
Pp3c6_9630 Physcomitrium patens HOM05D026113 ORTHO05D006797 3.8e-10 70.5 92 44.6
Pp3c16_7650 Physcomitrium patens HOM05D026113 ORTHO05D006797 1.1e-09 68.9 102 39.2
Pp3c23_10180 Physcomitrium patens HOM05D022188 ORTHO05D006797 2.7e-08 64.3 92 39.1
Pp3c10_11042 Physcomitrium patens HOM05D026113 ORTHO05D006797 3.5e-08 63.9 125 37.6
Mapoly0060s0031 Marchantia polymorpha HOM05D022188 ORTHO05D006797 1.5e-06 58.5 102 34.3
DCAR_023757 Daucus carota HOM05D000794 ORTHO05D000616 2.5e-06 57.8 69 43.5


User provided reference genes

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