Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048110 Camellia sinensis var. sinensis HOM05D005135 ORTHO05D005810 1.9e-128 462.6 245 100.0
Actinidia31800 Actinidia chinensis HOM05D005135 ORTHO05D005810 1.0e-97 360.5 252 79.0
Hma1.2p1_0488F.1_g163940 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 5.1e-94 348.2 261 75.5
Dinv35139 Davidia involucrata HOM05D005135 ORTHO05D005810 2.4e-91 339.3 263 72.6
vmacro09870 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 2.9e-89 332.4 254 72.8
Potri.015G135000 Populus trichocarpa HOM05D005135 ORTHO05D005810 7.2e-88 327.8 262 71.8
GSVIVG01018448001 Vitis vinifera HOM05D005135 ORTHO05D005810 2.6e-85 319.3 254 70.5
CiPaw.03G100200 Carya illinoinensis HOM05D005135 ORTHO05D005810 4.4e-85 318.5 241 72.2
Thecc.03G166900 Theobroma cacao HOM05D005135 ORTHO05D005810 1.8e-83 313.2 255 69.4
Eucgr.K00188 Eucalyptus grandis HOM05D005135 ORTHO05D005810 4.1e-83 312.0 253 68.8
Duzib084G0614 Durio zibethinus HOM05D005135 ORTHO05D005810 6.9e-83 311.2 255 68.2
FAN01G0847 Fragaria x ananassa HOM05D005135 ORTHO05D005810 6.9e-83 311.2 253 68.8
VMungo0720G1039 Vigna mungo HOM05D005135 ORTHO05D005810 1.5e-82 310.1 254 66.9
Sabra15G0147000 Salix brachista HOM05D005135 ORTHO05D005810 2.0e-82 309.7 290 65.2
Glyma.10G240700 Glycine max HOM05D005135 ORTHO05D005810 7.7e-82 307.8 254 66.9
Gohir.A12G262200 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.0e-81 307.4 255 68.2
Oeu022533.1 Olea europaea HOM05D005135 ORTHO05D005810 3.8e-81 305.4 253 67.6
Rhsim09G0195100 Rhododendron simsii HOM05D000559 ORTHO05D005810 3.8e-81 305.4 225 73.3
Gohir.D12G262900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.1e-80 303.9 255 67.5
Duzib068G0893 Durio zibethinus HOM05D005135 ORTHO05D005810 1.9e-80 303.1 255 67.1
Gorai.008G281800 Gossypium raimondii HOM05D005135 ORTHO05D005810 1.9e-80 303.1 255 67.5
Gohir.D08G104900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 7.2e-80 301.2 255 67.8
Phvul.007G065300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 1.2e-79 300.4 254 65.4
FAN10G2880 Fragaria x ananassa HOM05D005135 ORTHO05D005810 2.7e-79 299.3 286 60.8
CAN.G1187.4 Capsicum annuum HOM05D005135 ORTHO05D005810 2.3e-78 296.2 264 66.3
Oeu030142.1 Olea europaea HOM05D005135 ORTHO05D005810 3.0e-78 295.8 257 68.5
unitig_52.g17751 Utricularia gibba HOM05D005135 ORTHO05D005810 3.9e-78 295.4 250 66.4
Gohir.A08G093700 Gossypium hirsutum HOM05D005135 ORTHO05D005810 5.2e-78 295.0 255 66.7
Manes.14G031000 Manihot esculenta HOM05D005135 ORTHO05D005810 6.7e-78 294.7 250 67.2
arahy.Tifrunner.gnm1.ann1.UR3NDK Arachis hypogaea HOM05D005135 ORTHO05D005810 2.0e-77 293.1 253 65.6
Nn1g01287 Nelumbo nucifera HOM05D005135 ORTHO05D005810 2.6e-77 292.7 255 65.9
Sed0024541 Sechium edule HOM05D005135 ORTHO05D005810 5.7e-77 291.6 250 66.4
PGSC0003DMG400027379 Solanum tuberosum HOM05D005135 ORTHO05D005810 5.7e-77 291.6 255 65.9
FAN06G3133 Fragaria x ananassa HOM05D005135 ORTHO05D005810 7.4e-77 291.2 253 64.8
MSTRG.8780 Avicennia marina HOM05D005135 ORTHO05D005810 9.7e-77 290.8 258 66.3
RcHm_v2.0_Chr1g0376221 Rosa chinensis HOM05D005135 ORTHO05D005810 9.7e-77 290.8 253 65.2
arahy.Tifrunner.gnm1.ann1.3G6IEL Arachis hypogaea HOM05D005135 ORTHO05D005810 1.3e-76 290.4 253 65.2
FAN06G4903 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.7e-76 290.0 253 64.4
ClCG05G007690 Citrullus lanatus HOM05D005135 ORTHO05D005810 2.2e-76 289.7 253 66.8
Glyma.20G154000 Glycine max HOM05D005135 ORTHO05D005810 2.2e-76 289.7 255 64.3
Sopen11g029970 Solanum pennellii HOM05D005135 ORTHO05D005810 2.8e-76 289.3 262 65.6
COL.COLO4_14228 Corchorus olitorius HOM05D005135 ORTHO05D005810 4.8e-76 288.5 255 64.3
TAR629G2517 Trochodendron aralioides HOM05D005135 ORTHO05D005810 4.8e-76 288.5 256 65.2
FAN03G3482 Fragaria x ananassa HOM05D005135 ORTHO05D005810 6.3e-76 288.1 253 64.4
PSO782G0956 Papaver somniferum HOM05D005135 ORTHO05D005810 1.1e-75 287.3 248 66.5
Prupe.2G287200 Prunus persica HOM05D005135 ORTHO05D005810 1.1e-75 287.3 252 65.9
MELO3C006858.2 Cucumis melo HOM05D005135 ORTHO05D005810 1.4e-75 287.0 253 66.0
Solyc11g072300.2 Solanum lycopersicum HOM05D005135 ORTHO05D005810 1.4e-75 287.0 261 64.8
Ciclev10005677m.g Citrus clementina HOM05D005135 ORTHO05D005810 1.8e-75 286.6 257 64.2
Lalb_Chr06g0160891 Lupinus albus HOM05D005135 ORTHO05D005810 3.1e-75 285.8 253 63.6
Lj5g0000742 Lotus japonicus HOM05D005135 ORTHO05D005810 4.1e-75 285.4 249 64.3
Peaxi162Scf00557g00212 Petunia axillaris HOM05D005135 ORTHO05D005810 9.1e-75 284.3 257 64.2
Migut.F01160 Erythranthe guttata HOM05D005135 ORTHO05D005810 2.0e-74 283.1 249 65.9
CsaV3_3G016630 Cucumis sativus L. HOM05D005135 ORTHO05D005810 3.5e-74 282.3 253 65.2
Oeu030256.1 Olea europaea HOM05D005135 ORTHO05D005810 7.7e-74 281.2 266 63.2
AUR62021268 Chenopodium quinoa HOM05D005135 ORTHO05D005810 1.0e-73 280.8 251 62.9
FvH4_7g28720 Fragaria vesca HOM05D005135 ORTHO05D005810 1.3e-73 280.4 247 64.0
Nitab4.5_0000205g0180 Nicotiana tabacum HOM05D005135 ORTHO05D005810 1.3e-73 280.4 254 65.4
Rhsim03G0174700 Rhododendron simsii HOM05D000559 ORTHO05D000596 1.3e-73 280.4 255 64.3
CAN.G1182.3 Capsicum annuum HOM05D005135 ORTHO05D005810 1.7e-73 280.0 250 64.4
Sopen03g002840 Solanum pennellii HOM05D005135 ORTHO05D005810 2.2e-73 279.6 260 62.7
EL10Ac3g05742 Beta vulgaris HOM05D005135 ORTHO05D005810 5.0e-73 278.5 245 63.3
SGA_v2.0_scaffold10G05426 Striga asiatica HOM05D005135 ORTHO05D005810 5.0e-73 278.5 246 65.9
Solyc03g006850.3 Solanum lycopersicum HOM05D005135 ORTHO05D005810 1.5e-72 276.9 253 63.6
TWI23G0093 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 2.5e-72 276.2 246 64.2
Aqoxy7G00498 Aquilegia oxysepala HOM05D005135 ORTHO05D005810 3.2e-72 275.8 247 66.0
Lj1A988G25 Lonicera japonica HOM05D005135 ORTHO05D005810 4.2e-72 275.4 220 70.9
Ca_10813_v3 Cicer arietinum L. HOM05D005135 ORTHO05D005810 5.5e-72 275.0 249 63.1
HanXRQChr14g0461821 Helianthus annuus HOM05D005135 ORTHO05D005810 5.5e-72 275.0 236 67.4
A03p16010 Brassica napus HOM05D005135 ORTHO05D005810 9.4e-72 274.2 242 65.3
BraA03t10892Z Brassica rapa HOM05D005135 ORTHO05D005810 1.2e-71 273.9 246 65.9
VMungo0464G2082 Vigna mungo HOM05D000559 ORTHO05D005810 1.2e-71 273.9 257 61.9
BolC3t14274H Brassica oleracea HOM05D005135 ORTHO05D005810 2.1e-71 273.1 246 65.9
Ah.07g208790 Amaranthus hybridus HOM05D005135 ORTHO05D005810 2.7e-71 272.7 244 62.7
MD01G1193100 Malus domestica HOM05D005135 ORTHO05D005810 8.0e-71 271.2 243 64.2
BcaC01g06140 Brassica carinata HOM05D005135 ORTHO05D005810 1.0e-70 270.8 245 65.3
Nitab4.5_0001573g0020 Nicotiana tabacum HOM05D005135 ORTHO05D005810 1.0e-70 270.8 253 62.8
Hund04685 Selenicereus undatus HOM05D005135 ORTHO05D005810 1.0e-70 270.8 248 63.7
C03p18840 Brassica napus HOM05D005135 ORTHO05D005810 3.0e-70 269.2 245 64.9
Sc13g0008230 Simmondsia chinensis HOM05D005135 ORTHO05D005810 3.0e-70 269.2 252 61.9
PSO478G0331 Papaver somniferum HOM05D005135 ORTHO05D005810 4.0e-70 268.9 247 64.0
Psat7g169320 Pisum sativum HOM05D005135 ORTHO05D005810 6.7e-70 268.1 244 63.1
Aa31LG3G8280 Aethionema arabicum HOM05D005135 ORTHO05D005810 8.8e-70 267.7 242 64.0
ECA238G2105 Erigeron canadensis HOM05D005135 ORTHO05D005810 3.3e-69 265.8 241 63.5
MD00G1004200 Malus domestica HOM05D005135 ORTHO05D005810 3.3e-69 265.8 245 62.9
SGA_v2.0_scaffold303G47872 Striga asiatica HOM05D005135 ORTHO05D005810 4.4e-69 265.4 307 55.7
ATR0661G043 Amborella trichopoda HOM05D005135 ORTHO05D005810 7.5e-69 264.6 254 61.8
CDE07G1455 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 7.5e-69 264.6 257 60.7
TWI39G0390 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 2.2e-68 263.1 247 63.6
Medtr1g101945 Medicago truncatula HOM05D005135 ORTHO05D005810 3.7e-68 262.3 250 60.4
Dinv28508 Davidia involucrata HOM05D005135 ORTHO05D005810 1.8e-67 260.0 159 86.8
Sed0023089 Sechium edule HOM05D005135 ORTHO05D005810 2.7e-66 256.1 257 58.4
Cc02_g03590 Coffea canephora HOM05D005135 ORTHO05D005810 5.9e-66 255.0 267 58.8
vmacro06737 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 5.9e-66 255.0 376 47.1
Lsat_1_v5_gn_2_130120 Lactuca sativa HOM05D005135 ORTHO05D005810 2.9e-65 252.7 253 63.2
CARHR264720 Cardamine hirsuta HOM05D005135 ORTHO05D005810 5.0e-65 251.9 242 63.2
BcaB01g04154 Brassica carinata HOM05D005135 ORTHO05D005810 6.5e-65 251.5 242 61.6
BcaB08g35536 Brassica carinata HOM05D005135 ORTHO05D005810 1.1e-64 250.8 243 61.3
AT5G51840 Arabidopsis thaliana HOM05D005135 ORTHO05D005810 2.5e-64 249.6 246 62.2
Carub.0008s1186 Capsella rubella HOM05D005135 ORTHO05D005810 4.2e-64 248.8 246 59.8
Sp6g14090 Schrenkiella parvula HOM05D005135 ORTHO05D005810 1.2e-63 247.3 245 60.0
PGR142G1544 Punica granatum HOM05D005135 ORTHO05D005810 2.7e-63 246.1 251 58.2
Thhalv10014510m.g Eutrema salsugineum HOM05D005135 ORTHO05D005810 3.6e-63 245.7 245 61.2
Actinidia14214 Actinidia chinensis HOM05D005135 ORTHO05D005810 4.7e-63 245.4 192 72.4
FAN03G1115 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.8e-62 243.4 305 51.1
AL8G26130 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 2.3e-62 243.0 241 60.2
Zm00001eb027200 Zea mays HOM05D005135 ORTHO05D005810 4.4e-61 238.8 243 58.4
PGR042G3048 Punica granatum HOM05D005135 ORTHO05D005810 9.8e-61 237.7 151 83.4
TPR.G17397 Trifolium pratense HOM05D005135 ORTHO05D005810 1.7e-60 236.9 223 61.4
HPP92_001726 Vanilla planifolia HOM05D005135 ORTHO05D005810 1.7e-60 236.9 254 57.9
HPP92_001719 Vanilla planifolia HOM05D005135 ORTHO05D005810 6.3e-60 235.0 254 57.5
Gohir.D04G141600 Gossypium hirsutum HOM05D005135 ORTHO05D005810 8.3e-60 234.6 151 82.1
DCAR_020208 Daucus carota HOM05D005135 ORTHO05D005810 4.1e-59 232.3 220 64.1
AUR62016060 Chenopodium quinoa HOM05D005135 ORTHO05D005810 1.6e-58 230.3 265 52.8
Glyma.16G200500 Glycine max HOM05D005135 ORTHO05D005810 5.0e-57 225.3 243 55.6
Actinidia03096 Actinidia chinensis HOM05D005135 ORTHO05D005810 5.9e-50 201.8 192 63.5
AagrBONN_evm.TU.Sc2ySwM_117.1266 Anthoceros agrestis HOM05D005135 ORTHO05D005810 7.3e-48 194.9 276 47.5
Lalb_Chr21g0304891 Lupinus albus HOM05D005135 ORTHO05D005810 3.0e-46 189.5 219 52.5
Phvul.004G123300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 3.0e-46 189.5 245 49.8
Mapoly0096s0072 Marchantia polymorpha HOM05D005135 ORTHO05D005810 7.0e-43 178.3 249 44.2
Potri.012G132832 Populus trichocarpa HOM05D005135 ORTHO05D005810 2.7e-42 176.4 183 60.1
PGSC0003DMG400024247 Solanum tuberosum HOM05D005135 ORTHO05D005810 5.6e-40 168.7 178 58.4
Lj8C32T8 Lonicera japonica HOM05D005135 ORTHO05D005810 1.8e-38 163.7 101 81.2
Pp3c13_17710 Physcomitrium patens HOM05D005135 ORTHO05D005810 3.4e-37 159.5 281 39.5
Peaxi162Scf00192g00520 Petunia axillaris HOM05D005135 ORTHO05D005810 5.8e-37 158.7 207 52.7
Haze_13791 Corylus avellana HOM05D005135 ORTHO05D005810 8.3e-36 154.8 268 44.4
CDE04G3520 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 1.9e-35 153.7 179 54.2
Lj8A32T30 Lonicera japonica HOM05D005135 ORTHO05D005810 1.6e-34 150.6 156 60.9
AL8G30000 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 1.7e-33 147.1 97 78.4
SHI13830 Sapria himalayana HOM05D005135 ORTHO05D005810 1.5e-32 144.1 138 58.7
BcaC04g20628 Brassica carinata HOM05D005135 ORTHO05D005810 8.9e-22 108.2 216 41.2
SHI48584 Sapria himalayana HOM05D005135 ORTHO05D005810 2.6e-21 106.7 147 47.6
Cre16.g661800 Chlamydomonas reinhardtii HOM05D005135 ORTHO05D005810 5.8e-21 105.5 126 46.8
Os10g0188400 Oryza sativa ssp. japonica HOM05D005135 ORTHO05D005810 4.6e-18 95.9 65 73.8
Hund01499 Selenicereus undatus HOM05D000873 ORTHO05D005810 4.6e-18 95.9 106 51.9
Hma1.2p1_3202F.1_g333920 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 7.8e-18 95.1 59 86.4
Potri.012G132766 Populus trichocarpa HOM05D005135 ORTHO05D005810 1.1e-16 91.3 60 75.0
TAR291G0007 Trochodendron aralioides HOM05D005135 ORTHO05D005810 3.3e-16 89.7 143 44.1
Duzib205G1338 Durio zibethinus HOM05D005135 ORTHO05D005810 6.9e-14 82.0 132 43.2
Duzib205G1376 Durio zibethinus HOM05D005135 ORTHO05D005810 2.6e-13 80.1 85 56.5
Cpa.g.sc4.198 Carica papaya HOM05D005135 ORTHO05D005810 9.9e-13 78.2 91 52.7
SMO201G0013 Selaginella moellendorffii HOM05D005135 ORTHO05D005810 1.1e-11 74.7 63 60.3
SEGI_16349 Sequoiadendron giganteum HOM05D056048 ORTHO05D005810 3.9e-09 66.2 176 34.1
PRCOL_00003096 Prasinoderma coloniale HOM05D005135 ORTHO05D005810 9.6e-08 61.6 86 44.2
CDE04G1613 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 1.6e-07 60.8 35 80.0
Glyma.09G148800 Glycine max HOM05D005135 ORTHO05D005810 6.9e-06 55.5 91 44.0


User provided reference genes

Program Settings