Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048107 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 1.0e-69 266.5 127 100.0
CSS0013613 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 1.5e-65 252.7 123 97.6
CSS0031837 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 7.6e-25 117.5 123 50.4
Actinidia32754 Actinidia chinensis HOM05D003277 ORTHO05D003275 3.8e-24 115.2 127 52.0
Cc02_g27850 Coffea canephora HOM05D003277 ORTHO05D003275 4.6e-22 108.2 123 48.0
vmacro18910 Vaccinium macrocarpon HOM05D003277 ORTHO05D003275 6.0e-22 107.8 121 49.6
Rhsim08G0221600 Rhododendron simsii HOM05D003277 ORTHO05D003275 2.3e-21 105.9 122 50.8
Ciclev10026796m.g Citrus clementina HOM05D003277 ORTHO05D003275 1.5e-20 103.2 119 48.7
Cc04_g03410 Coffea canephora HOM05D003277 ORTHO05D003275 1.5e-20 103.2 124 47.6
Hma1.2p1_0092F.1_g046645 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 1.5e-20 103.2 119 48.7
Atru.chr1.3275 Acer truncatum HOM05D003277 ORTHO05D003275 2.5e-20 102.4 118 45.8
Oeu063975.1 Olea europaea HOM05D003277 ORTHO05D003275 1.3e-19 100.1 92 53.3
Oeu063976.1 Olea europaea HOM05D003277 ORTHO05D003275 1.3e-19 100.1 92 53.3
Nitab4.5_0000671g0120 Nicotiana tabacum HOM05D003277 ORTHO05D003275 1.1e-18 97.1 123 50.4
Sopen06g025000 Solanum pennellii HOM05D003277 ORTHO05D003275 1.1e-18 97.1 118 50.0
PGSC0003DMG400016508 Solanum tuberosum HOM05D003277 ORTHO05D003275 1.4e-18 96.7 125 47.2
Nitab4.5_0005851g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 2.4e-18 95.9 123 49.6
Peaxi162Scf00015g00042 Petunia axillaris HOM05D003277 ORTHO05D003275 6.9e-18 94.4 101 53.5
Migut.D01029 Erythranthe guttata HOM05D003277 ORTHO05D003275 1.5e-17 93.2 90 53.3
Nn2g11767 Nelumbo nucifera HOM05D003277 ORTHO05D003275 2.0e-17 92.8 127 46.5
Thecc.06G088500 Theobroma cacao HOM05D003277 ORTHO05D003275 5.9e-17 91.3 120 44.2
QL05p023505 Quercus lobata HOM05D003277 ORTHO05D003275 1.0e-16 90.5 121 43.8
Solyc06g066710.1 Solanum lycopersicum HOM05D003277 ORTHO05D003275 1.0e-16 90.5 118 47.5
vmacro18909 Vaccinium macrocarpon HOM05D003277 ORTHO05D003275 1.0e-16 90.5 119 47.1
Oeu033486.1 Olea europaea HOM05D003277 ORTHO05D003275 1.7e-16 89.7 95 47.4
Solyc03g120170.1 Solanum lycopersicum HOM05D003277 ORTHO05D003275 1.7e-16 89.7 123 47.2
Sopen03g039050 Solanum pennellii HOM05D003277 ORTHO05D003275 1.7e-16 89.7 123 48.0
PGSC0003DMG400005684 Solanum tuberosum HOM05D003277 ORTHO05D003275 2.9e-16 89.0 101 50.5
SalBow2G1122 Salvia bowleyana HOM05D003277 ORTHO05D003275 3.8e-16 88.6 95 50.5
Duzib235G0396 Durio zibethinus HOM05D003277 ORTHO05D003275 5.0e-16 88.2 118 44.9
TAR624G0051 Trochodendron aralioides HOM05D003277 ORTHO05D003275 6.5e-16 87.8 122 45.1
Nn8g39213 Nelumbo nucifera HOM05D003277 ORTHO05D003275 1.1e-15 87.0 129 44.2
CAN.G395.13 Capsicum annuum HOM05D003277 ORTHO05D003275 3.2e-15 85.5 107 50.5
Nitab4.5_0002859g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 4.2e-15 85.1 105 51.4
Gohir.D05G129700 Gossypium hirsutum HOM05D003277 ORTHO05D003275 2.1e-14 82.8 94 48.9
Gorai.009G133500 Gossypium raimondii HOM05D003277 ORTHO05D003275 3.6e-14 82.0 91 49.5
Manes.11G047000 Manihot esculenta HOM05D003277 ORTHO05D003275 3.6e-14 82.0 121 42.1
Rhsim12G0198400 Rhododendron simsii HOM05D000062 ORTHO05D014675 4.6e-14 81.6 109 46.8
Nitab4.5_0014613g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 6.1e-14 81.3 101 49.5
Migut.I00868 Erythranthe guttata HOM05D003277 ORTHO05D003275 7.9e-14 80.9 105 43.8
Gohir.A05G130300 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.4e-13 80.1 91 48.4
Potri.001G180500 Populus trichocarpa HOM05D003277 ORTHO05D003275 3.9e-13 78.6 117 41.9
Haze_16415 Corylus avellana HOM05D003277 ORTHO05D003275 6.7e-13 77.8 121 39.7
Haze_16418 Corylus avellana HOM05D003277 ORTHO05D003275 6.7e-13 77.8 121 39.7
MBI04_g08935_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 6.7e-13 77.8 115 40.9
Glyma.04G079300 Glycine max HOM05D003277 ORTHO05D003275 1.1e-12 77.0 109 41.3
SGA_v2.0_scaffold5G02589 Striga asiatica HOM05D003277 ORTHO05D003275 1.5e-12 76.6 104 44.2
Manes.04G123700 Manihot esculenta HOM05D003277 ORTHO05D003275 1.9e-12 76.3 83 50.6
Haze_25704 Corylus avellana HOM05D000750 ORTHO05D000714 3.3e-12 75.5 114 41.2
Cfa003268 Carpinus fangiana HOM05D003277 ORTHO05D003275 4.3e-12 75.1 116 42.2
Prupe.7G229300 Prunus persica HOM05D003277 ORTHO05D003275 5.7e-12 74.7 123 41.5
CAN.G438.69 Capsicum annuum HOM05D003277 ORTHO05D003275 7.4e-12 74.3 76 52.6
SalBow2G2751 Salvia bowleyana HOM05D003277 ORTHO05D003275 7.4e-12 74.3 104 41.3
Actinidia08979 Actinidia chinensis HOM05D005698 ORTHO05D007022 1.3e-11 73.6 78 47.4
Glyma.05G231600 Glycine max HOM05D003277 ORTHO05D003275 1.3e-11 73.6 121 38.8
RhsimUnG0085500 Rhododendron simsii HOM05D003277 ORTHO05D003275 2.2e-11 72.8 92 44.6
Glyma.06G080800 Glycine max HOM05D003277 ORTHO05D003275 2.8e-11 72.4 109 40.4
COL.COLO4_34902 Corchorus olitorius HOM05D003277 ORTHO05D003275 3.7e-11 72.0 121 35.5
Aqoxy7G01700 Aquilegia oxysepala HOM05D003277 ORTHO05D003275 4.8e-11 71.6 115 40.9
Dinv36618 Davidia involucrata HOM05D003277 ORTHO05D003275 4.8e-11 71.6 115 39.1
FAN26G0013 Fragaria x ananassa HOM05D003277 ORTHO05D003275 4.8e-11 71.6 119 40.3
Glyma.15G014600 Glycine max HOM05D003277 ORTHO05D003275 4.8e-11 71.6 89 47.2
VMungo1080G1196 Vigna mungo HOM05D003111 ORTHO05D003502 4.8e-11 71.6 87 43.7
COL.COLO4_30383 Corchorus olitorius HOM05D003277 ORTHO05D003275 6.3e-11 71.2 95 47.4
Cfa002072 Carpinus fangiana HOM05D003277 ORTHO05D003275 1.1e-10 70.5 122 37.7
Prupe.3G070700 Prunus persica HOM05D003277 ORTHO05D003275 1.1e-10 70.5 83 49.4
FvH4_1g05060 Fragaria vesca HOM05D003277 ORTHO05D003275 1.4e-10 70.1 79 50.6
FAN19G2424 Fragaria x ananassa HOM05D000750 ORTHO05D000714 1.4e-10 70.1 79 50.6
Glyma.13G359300 Glycine max HOM05D003277 ORTHO05D003275 1.4e-10 70.1 83 49.4
FAN23G0772 Fragaria x ananassa HOM05D000750 ORTHO05D000714 1.8e-10 69.7 116 40.5
Potri.003G055100 Populus trichocarpa HOM05D003277 ORTHO05D003275 5.3e-10 68.2 115 41.7
Sabra01G0146300 Salix brachista HOM05D003277 ORTHO05D003275 5.3e-10 68.2 81 48.1
Lalb_Chr25g0279671 Lupinus albus HOM05D003277 ORTHO05D003275 6.9e-10 67.8 95 42.1
Lsat_1_v5_gn_5_130221 Lactuca sativa HOM05D003277 ORTHO05D003275 9.1e-10 67.4 113 38.9
Phvul.009G105000 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 9.1e-10 67.4 117 36.8
Glyma.08G206600 Glycine max HOM05D003277 ORTHO05D003275 1.2e-09 67.0 112 39.3
HPP92_002801 Vanilla planifolia HOM05D003277 ORTHO05D003275 1.2e-09 67.0 114 38.6
MBI01_g34157_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 1.5e-09 66.6 116 37.1
Phvul.005G171100 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 2.6e-09 65.9 89 44.9
Potri.018G036300 Populus trichocarpa HOM05D003277 ORTHO05D003275 2.6e-09 65.9 78 47.4
Duzib150G0682 Durio zibethinus HOM05D003277 ORTHO05D003275 3.4e-09 65.5 115 38.3
Glyma.07G006000 Glycine max HOM05D003277 ORTHO05D003275 3.4e-09 65.5 112 38.4
Manes.03G064500 Manihot esculenta HOM05D003277 ORTHO05D003275 4.5e-09 65.1 114 39.5
Manes.03G064940 Manihot esculenta HOM05D003277 ORTHO05D003275 4.5e-09 65.1 114 39.5
Haze_21824 Corylus avellana HOM05D003277 ORTHO05D003275 7.7e-09 64.3 88 40.9
Duzib150G1012 Durio zibethinus HOM05D000818 ORTHO05D003275 7.7e-09 64.3 75 45.3
Hma1.2p1_0018F.1_g013430 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 7.7e-09 64.3 119 38.7
FAN28G0377 Fragaria x ananassa HOM05D000750 ORTHO05D000714 1.0e-08 63.9 79 48.1
Sabra06G0191100 Salix brachista HOM05D003277 ORTHO05D003275 1.0e-08 63.9 79 48.1
TPR.G24192 Trifolium pratense HOM05D003277 ORTHO05D003275 1.0e-08 63.9 91 42.9
CANSAT56G1808 Cannabis sativa HOM05D003277 ORTHO05D003275 1.3e-08 63.5 99 43.4
Thecc.09G112200 Theobroma cacao HOM05D003277 ORTHO05D003275 1.3e-08 63.5 96 42.7
Cfa013333 Carpinus fangiana HOM05D003277 ORTHO05D003275 2.2e-08 62.8 82 43.9
Manes.16G066800 Manihot esculenta HOM05D003277 ORTHO05D003275 2.2e-08 62.8 78 48.7
Phvul.010G150400 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 2.2e-08 62.8 110 34.5
QL02p085574 Quercus lobata HOM05D003277 ORTHO05D003275 2.2e-08 62.8 93 41.9
Gohir.D07G027850 Gossypium hirsutum HOM05D003277 ORTHO05D003275 2.9e-08 62.4 71 47.9
Gorai.001G029100 Gossypium raimondii HOM05D003277 ORTHO05D003275 2.9e-08 62.4 71 47.9
RcHm_v2.0_Chr6g0305601 Rosa chinensis HOM05D003277 ORTHO05D003275 2.9e-08 62.4 83 44.6
VMungo0251G2336 Vigna mungo HOM05D003277 ORTHO05D003275 2.9e-08 62.4 120 36.7
HanXRQChr10g0313381 Helianthus annuus HOM05D003277 ORTHO05D003275 3.8e-08 62.0 107 36.4
TPR.G12111 Trifolium pratense HOM05D003277 ORTHO05D003275 3.8e-08 62.0 107 38.3
FvH4_2g36280 Fragaria vesca HOM05D003277 ORTHO05D003275 5.0e-08 61.6 83 43.4
FAN27G2228 Fragaria x ananassa HOM05D003277 ORTHO05D003275 5.0e-08 61.6 83 43.4
Thecc.09G038300 Theobroma cacao HOM05D003277 ORTHO05D003275 5.0e-08 61.6 74 45.9
Gohir.A07G024250 Gossypium hirsutum HOM05D003277 ORTHO05D003275 6.5e-08 61.2 71 46.5
VMungo0331G0823 Vigna mungo HOM05D003277 ORTHO05D003275 6.5e-08 61.2 104 35.6
FAN15G2136 Fragaria x ananassa HOM05D003277 ORTHO05D003275 8.5e-08 60.8 93 40.9
FAN20G0113 Fragaria x ananassa HOM05D003277 ORTHO05D003275 1.4e-07 60.1 93 40.9
RcHm_v2.0_Chr2g0137921 Rosa chinensis HOM05D003277 ORTHO05D003275 1.4e-07 60.1 76 40.8
Atru.chr7.2298 Acer truncatum HOM05D003277 ORTHO05D003275 1.9e-07 59.7 69 50.7
arahy.Tifrunner.gnm1.ann1.R7R2S9 Arachis hypogaea HOM05D003277 ORTHO05D003275 1.9e-07 59.7 121 36.4
Medtr4g012510 Medicago truncatula HOM05D003277 ORTHO05D003275 1.9e-07 59.7 91 39.6
Gohir.A07G006900 Gossypium hirsutum HOM05D003277 ORTHO05D003275 2.5e-07 59.3 115 35.7
Gorai.001G004600 Gossypium raimondii HOM05D003277 ORTHO05D003275 2.5e-07 59.3 121 37.2
MD17G1194700 Malus domestica HOM05D003277 ORTHO05D003275 2.5e-07 59.3 93 43.0
Medtr8g083490 Medicago truncatula HOM05D003277 ORTHO05D003275 2.5e-07 59.3 102 40.2
COL.COLO4_18709 Corchorus olitorius HOM05D003277 ORTHO05D003275 3.2e-07 58.9 79 41.8
Phvul.002G313800 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 3.2e-07 58.9 75 42.7
Psat7g252200 Pisum sativum HOM05D003277 ORTHO05D003275 3.2e-07 58.9 88 39.8
Potri.006G244200 Populus trichocarpa HOM05D003277 ORTHO05D003275 3.2e-07 58.9 79 46.8
Ciclev10010574m.g Citrus clementina HOM05D003277 ORTHO05D003275 4.2e-07 58.5 89 43.8
Lalb_Chr23g0269371 Lupinus albus HOM05D003277 ORTHO05D003275 4.2e-07 58.5 93 39.8
Zm00001eb122140 Zea mays HOM05D003277 ORTHO05D003275 4.2e-07 58.5 40 62.5
Cpa.g.sc205.7 Carica papaya HOM05D003277 ORTHO05D003275 5.5e-07 58.2 77 45.5
Glyma.14G140500 Glycine max HOM05D003277 ORTHO05D003275 5.5e-07 58.2 79 41.8
Psat7g252160 Pisum sativum HOM05D003277 ORTHO05D003275 5.5e-07 58.2 101 39.6
Atru.chr7.1333 Acer truncatum HOM05D003277 ORTHO05D003275 9.4e-07 57.4 111 37.8
PGSC0003DMG400000318 Solanum tuberosum HOM05D003277 ORTHO05D003275 9.4e-07 57.4 114 31.6
TAR636G2419 Trochodendron aralioides HOM05D000750 ORTHO05D000714 9.4e-07 57.4 73 47.9
Psat7g252120 Pisum sativum HOM05D003277 ORTHO05D003275 1.2e-06 57.0 81 42.0
vmacro20693 Vaccinium macrocarpon HOM05D010253 ORTHO05D015231 1.2e-06 57.0 73 47.9
arahy.Tifrunner.gnm1.ann1.RIWW0V Arachis hypogaea HOM05D003277 ORTHO05D003275 1.6e-06 56.6 83 39.8
Gohir.A05G049100 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.6e-06 56.6 55 52.7
Gohir.D05G051000 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.6e-06 56.6 55 52.7
Gorai.009G052600 Gossypium raimondii HOM05D003277 ORTHO05D003275 1.6e-06 56.6 55 52.7
arahy.Tifrunner.gnm1.ann1.9450TA Arachis hypogaea HOM05D003277 ORTHO05D003275 2.1e-06 56.2 84 39.3
CsaV3_3G047340 Cucumis sativus L. HOM05D002580 ORTHO05D002811 2.7e-06 55.8 78 42.3
AUR62011006 Chenopodium quinoa HOM05D000030 ORTHO05D000009 4.7e-06 55.1 69 36.2
Glyma.07G087300 Glycine max HOM05D003277 ORTHO05D003275 4.7e-06 55.1 68 48.5
Prupe.1G454200 Prunus persica HOM05D003277 ORTHO05D003275 4.7e-06 55.1 80 45.0
Gohir.D07G005000 Gossypium hirsutum HOM05D003277 ORTHO05D003275 6.1e-06 54.7 68 50.0
Peaxi162Scf00560g00019 Petunia axillaris HOM05D003277 ORTHO05D003275 6.1e-06 54.7 93 39.8
RcHm_v2.0_Chr2g0090671 Rosa chinensis HOM05D003277 ORTHO05D003275 6.1e-06 54.7 57 54.4
Lj3g0000153 Lotus japonicus HOM05D003277 ORTHO05D003275 7.9e-06 54.3 72 44.4
Phvul.004G162400 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 7.9e-06 54.3 67 44.8
Psat7g251800 Pisum sativum HOM05D003277 ORTHO05D003275 7.9e-06 54.3 74 43.2


User provided reference genes

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