Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048102 Camellia sinensis var. sinensis HOM05D007332 ORTHO05D009297 1.6e-80 303.1 201 100.0
Dinv27272 Davidia involucrata HOM05D001470 ORTHO05D006430 6.6e-47 191.4 201 68.7
Manes.02G166600 Manihot esculenta HOM05D007332 ORTHO05D009297 1.1e-41 174.1 201 51.2
Dinv14654 Davidia involucrata HOM05D007332 ORTHO05D009297 4.6e-40 168.7 197 62.9
COL.COLO4_03954 Corchorus olitorius HOM05D007332 ORTHO05D009297 2.3e-39 166.4 217 60.4
Hma1.2p1_0542F.1_g174970 Hydrangea macrophylla HOM05D007332 ORTHO05D009297 2.3e-39 166.4 201 50.7
Ciclev10002610m.g Citrus clementina HOM05D007332 ORTHO05D009297 1.1e-38 164.1 201 49.3
Potri.005G181200 Populus trichocarpa HOM05D007332 ORTHO05D009297 1.1e-38 164.1 201 54.2
QL09p033201 Quercus lobata HOM05D007332 ORTHO05D009297 1.1e-38 164.1 201 49.8
TWI34G0633 Tripterygium wilfordii HOM05D007332 ORTHO05D009297 1.9e-38 163.3 204 47.5
Atru.chr13.1537 Acer truncatum HOM05D007332 ORTHO05D009297 2.5e-38 162.9 199 49.2
CiPaw.15G033700 Carya illinoinensis HOM05D007332 ORTHO05D009297 2.5e-38 162.9 205 47.8
Cfa018560 Carpinus fangiana HOM05D007332 ORTHO05D009297 7.3e-38 161.4 204 49.0
Potri.002G080200 Populus trichocarpa HOM05D007332 ORTHO05D009297 7.3e-38 161.4 215 53.5
Duzib093G1986 Durio zibethinus HOM05D007332 ORTHO05D009297 3.6e-37 159.1 210 57.6
Gorai.009G248200 Gossypium raimondii HOM05D007332 ORTHO05D009297 1.1e-36 157.5 209 50.7
Sabra02G0062700 Salix brachista HOM05D007332 ORTHO05D009297 2.3e-36 156.4 196 48.0
Gohir.A05G237300 Gossypium hirsutum HOM05D007332 ORTHO05D009297 3.1e-36 156.0 209 50.7
Gohir.D05G239400 Gossypium hirsutum HOM05D007332 ORTHO05D009297 4.0e-36 155.6 209 50.2
Sopen03g032530 Solanum pennellii HOM05D007332 ORTHO05D009297 1.2e-35 154.1 204 48.5
CAN.G1486.2 Capsicum annuum HOM05D007332 ORTHO05D009297 2.0e-35 153.3 201 47.8
Cc10_g12430 Coffea canephora HOM05D007332 ORTHO05D009297 2.2e-34 149.8 211 46.0
PGSC0003DMG400024564 Solanum tuberosum HOM05D007332 ORTHO05D009297 3.7e-34 149.1 201 47.3
Solyc03g113480.1 Solanum lycopersicum HOM05D007332 ORTHO05D009297 1.9e-33 146.7 201 47.3
Nitab4.5_0006720g0020 Nicotiana tabacum HOM05D007332 ORTHO05D009297 3.2e-33 146.0 205 45.9
RcHm_v2.0_Chr6g0296401 Rosa chinensis HOM05D007332 ORTHO05D009297 3.2e-33 146.0 211 52.1
FAN27G1631 Fragaria x ananassa HOM05D007332 ORTHO05D009297 5.4e-33 145.2 212 50.5
Peaxi162Scf00310g00043 Petunia axillaris HOM05D007332 ORTHO05D009297 5.4e-33 145.2 203 48.8
Duzib116G0046 Durio zibethinus HOM05D007332 ORTHO05D009297 1.6e-32 143.7 206 52.9
FAN20G0761 Fragaria x ananassa HOM05D007332 ORTHO05D009297 2.1e-32 143.3 212 50.5
FAN24G1344 Fragaria x ananassa HOM05D007332 ORTHO05D009297 2.1e-32 143.3 212 53.3
Lj1g0005314 Lotus japonicus HOM05D007332 ORTHO05D009297 2.7e-32 142.9 209 44.0
Nitab4.5_0000111g0100 Nicotiana tabacum HOM05D007332 ORTHO05D009297 4.6e-32 142.1 203 45.8
arahy.Tifrunner.gnm1.ann1.ILK6IZ Arachis hypogaea HOM05D007332 ORTHO05D009297 1.7e-31 140.2 206 54.4
FvH4_2g27560 Fragaria vesca HOM05D007332 ORTHO05D009297 1.7e-31 140.2 212 52.8
Phvul.009G128000 Phaseolus vulgaris HOM05D007332 ORTHO05D009297 2.3e-31 139.8 206 43.2
Glyma.04G246900 Glycine max HOM05D007332 ORTHO05D009297 5.1e-31 138.7 206 42.2
Sabra05G0137200 Salix brachista HOM05D007332 ORTHO05D009297 5.1e-31 138.7 189 51.3
Eucgr.F04333 Eucalyptus grandis HOM05D007332 ORTHO05D009297 1.1e-30 137.5 227 42.7
MSTRG.1422 Avicennia marina HOM05D007332 ORTHO05D009297 1.9e-30 136.7 200 44.5
MELO3C010504.2 Cucumis melo HOM05D007332 ORTHO05D009297 3.3e-30 136.0 206 42.7
ClCG11G015900 Citrullus lanatus HOM05D007332 ORTHO05D009297 5.6e-30 135.2 201 40.3
VMungo1309G0081 Vigna mungo HOM05D007332 ORTHO05D009297 5.6e-30 135.2 206 41.7
Glyma.06G115900 Glycine max HOM05D007332 ORTHO05D009297 7.3e-30 134.8 206 42.2
PGR044G1395 Punica granatum HOM05D007332 ORTHO05D009297 9.5e-30 134.4 213 39.4
TAR381G0705 Trochodendron aralioides HOM05D007332 ORTHO05D009297 1.4e-28 130.6 201 48.3
Actinidia15225 Actinidia chinensis HOM05D007332 ORTHO05D009297 2.4e-28 129.8 111 64.9
Psat5g085840 Pisum sativum HOM05D007332 ORTHO05D009297 5.2e-28 128.6 208 40.4
Gohir.A06G046800 Gossypium hirsutum HOM05D007332 ORTHO05D009297 3.4e-27 125.9 181 48.1
Gorai.010G052700 Gossypium raimondii HOM05D007332 ORTHO05D009297 5.8e-27 125.2 186 53.8
ECA232G0093 Erigeron canadensis HOM05D007332 ORTHO05D009297 7.6e-27 124.8 204 50.0
Prupe.1G492300 Prunus persica HOM05D007332 ORTHO05D009297 9.9e-27 124.4 207 54.1
TPR.G13457 Trifolium pratense HOM05D007332 ORTHO05D009297 1.3e-26 124.0 209 42.1
CsaV3_4G028070 Cucumis sativus L. HOM05D007332 ORTHO05D009297 1.7e-26 123.6 195 40.5
Thecc.08G130400 Theobroma cacao HOM05D007332 ORTHO05D009297 6.4e-26 121.7 220 48.6
MD15G1344600 Malus domestica HOM05D007332 ORTHO05D009297 1.1e-25 120.9 206 57.3
Nn1g08887 Nelumbo nucifera HOM05D007332 ORTHO05D009297 1.9e-25 120.2 230 47.4
arahy.Tifrunner.gnm1.ann1.396V4Q Arachis hypogaea HOM05D007332 ORTHO05D009297 1.2e-24 117.5 178 50.0
Medtr3g088400 Medicago truncatula HOM05D007332 ORTHO05D009297 1.6e-24 117.1 210 39.5
Hma1.2p1_0542F.1_g175020 Hydrangea macrophylla HOM05D007332 ORTHO05D009297 1.3e-23 114.0 165 44.8
arahy.Tifrunner.gnm1.ann1.34D5TH Arachis hypogaea HOM05D007332 ORTHO05D009297 2.3e-23 113.2 176 47.7
SGA_v2.0_scaffold52G18934 Striga asiatica HOM05D007332 ORTHO05D009297 3.0e-23 112.8 204 42.6
SalBow7G3495 Salvia bowleyana HOM05D007332 ORTHO05D009297 1.5e-22 110.5 203 38.9
PGSC0003DMG400006046 Solanum tuberosum HOM05D007332 ORTHO05D009297 5.6e-22 108.6 201 40.8
BcaB03g15951 Brassica carinata HOM05D007332 ORTHO05D009297 1.6e-21 107.1 230 35.7
Nn5g28415 Nelumbo nucifera HOM05D007332 ORTHO05D009297 1.6e-21 107.1 188 43.6
HanXRQChr09g0260291 Helianthus annuus HOM05D007332 ORTHO05D009297 4.7e-21 105.5 205 43.9
BolC6t40174H Brassica oleracea HOM05D007332 ORTHO05D009297 8.1e-21 104.8 232 34.5
BraA07t31813Z Brassica rapa HOM05D007332 ORTHO05D009297 1.1e-20 104.4 232 34.5
AL2G37600 Arabidopsis lyrata HOM05D007332 ORTHO05D009297 2.4e-20 103.2 236 34.3
A07p42920 Brassica napus HOM05D007332 ORTHO05D009297 2.4e-20 103.2 236 36.4
CARHR070880 Cardamine hirsuta HOM05D007332 ORTHO05D009297 2.4e-20 103.2 238 33.2
FAN15G1303 Fragaria x ananassa HOM05D007332 ORTHO05D009297 2.4e-20 103.2 185 49.2
AT1G77400 Arabidopsis thaliana HOM05D007332 ORTHO05D009297 6.9e-20 101.7 234 33.8
C06p51540 Brassica napus HOM05D007332 ORTHO05D009297 6.9e-20 101.7 232 34.1
DCAR_003566 Daucus carota HOM05D007332 ORTHO05D009297 1.2e-19 100.9 207 36.2
BcaC08g47611 Brassica carinata HOM05D007332 ORTHO05D009297 1.5e-19 100.5 229 33.6
THA.LOC104813672 Tarenaya hassleriana HOM05D007332 ORTHO05D009297 2.6e-19 99.8 228 34.2
Lsat_1_v5_gn_4_74261 Lactuca sativa HOM05D007332 ORTHO05D009297 4.4e-19 99.0 204 39.7
Sp5g32550 Schrenkiella parvula HOM05D007332 ORTHO05D009297 5.8e-19 98.6 233 40.3
Carub.0002s2429 Capsella rubella HOM05D007332 ORTHO05D009297 7.6e-19 98.2 238 31.9
BcaB05g25043 Brassica carinata HOM05D007332 ORTHO05D009297 9.9e-19 97.8 227 45.4
Migut.C01053 Erythranthe guttata HOM05D007332 ORTHO05D009297 2.2e-18 96.7 197 37.6
C02p17420 Brassica napus HOM05D007332 ORTHO05D009297 6.4e-18 95.1 214 34.1
BolC2t07856H Brassica oleracea HOM05D007332 ORTHO05D009297 6.4e-18 95.1 214 34.1
Thhalv10019445m.g Eutrema salsugineum HOM05D007332 ORTHO05D009297 1.1e-17 94.4 233 36.1
BcaC03g15733 Brassica carinata HOM05D007332 ORTHO05D009297 1.4e-17 94.0 227 33.9
Aa31LG4G7420 Aethionema arabicum HOM05D007332 ORTHO05D009297 3.2e-17 92.8 235 34.5
Ca_16594_v3 Cicer arietinum L. HOM05D007332 ORTHO05D009297 7.1e-17 91.7 173 35.8
BcaC08g47610 Brassica carinata HOM05D007332 ORTHO05D009297 1.0e-15 87.8 221 31.7
BolC2t09481H Brassica oleracea HOM05D007332 ORTHO05D009297 6.6e-15 85.1 222 32.4
C02p34520 Brassica napus HOM05D007332 ORTHO05D009297 4.0e-12 75.9 199 31.7
BraA02t07143Z Brassica rapa HOM05D007332 ORTHO05D009297 1.2e-11 74.3 199 32.7
MBI06_g33108_MAGBIO Magnolia biondii HOM05D007332 ORTHO05D009297 2.6e-11 73.2 203 32.0
Sed0015452 Sechium edule HOM05D007332 ORTHO05D009297 2.6e-11 73.2 158 37.3
PGSC0003DMG401029181 Solanum tuberosum HOM05D007332 ORTHO05D009297 1.3e-10 70.9 70 60.0
CANSAT25G2745 Cannabis sativa HOM05D007332 ORTHO05D009297 2.2e-10 70.1 208 38.9
A02p21250 Brassica napus HOM05D007332 ORTHO05D009297 1.9e-09 67.0 221 38.9
Lalb_Chr17g0343611 Lupinus albus HOM05D007332 ORTHO05D009297 2.4e-09 66.6 196 38.3
THA.LOC104800214 Tarenaya hassleriana HOM05D007332 ORTHO05D009297 5.4e-09 65.5 184 32.1
MBI06_g45442_MAGBIO Magnolia biondii HOM05D007332 ORTHO05D009297 3.0e-07 59.7 138 37.7
Ah.03g139000 Amaranthus hybridus HOM05D007332 ORTHO05D009297 7.4e-06 55.1 203 30.5


User provided reference genes

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