Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048086 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 4.5e-83 311.6 206 100.0
CSS0023603 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.0e-58 230.7 200 63.5
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 9.4e-49 197.6 208 59.6
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 1.2e-48 197.2 208 58.7
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 2.6e-46 189.5 207 71.5
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 4.4e-46 188.7 206 52.4
Duzib251G0690 Durio zibethinus HOM05D003968 ORTHO05D004077 2.2e-45 186.4 210 70.0
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 3.7e-45 185.7 206 59.7
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 3.7e-45 185.7 207 60.9
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 1.1e-44 184.1 206 61.7
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 1.8e-44 183.3 207 60.4
vmacro22632 Vaccinium macrocarpon HOM05D003968 ORTHO05D004077 1.8e-44 183.3 205 70.7
CSS0002178 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 2.4e-44 183.0 206 62.1
Peaxi162Scf00758g00054 Petunia axillaris HOM05D003968 ORTHO05D004077 2.4e-44 183.0 208 69.7
Hma1.2p1_0459F.1_g157230 Hydrangea macrophylla HOM05D003968 ORTHO05D004077 3.1e-44 182.6 209 73.7
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 4.1e-44 182.2 227 55.9
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 7.0e-44 181.4 213 54.9
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 2.7e-43 179.5 213 58.7
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 7.7e-43 177.9 203 59.1
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 2.2e-42 176.4 203 49.3
Thecc.02G196200 Theobroma cacao HOM05D003968 ORTHO05D004077 2.9e-42 176.0 207 75.4
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 8.5e-42 174.5 206 58.3
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 3.2e-41 172.6 207 56.5
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 5.5e-41 171.8 208 48.6
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 1.6e-40 170.2 206 69.9
RcHm_v2.0_Chr4g0429341 Rosa chinensis HOM05D003968 ORTHO05D004077 2.1e-40 169.9 224 65.6
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 2.7e-40 169.5 208 60.6
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 4.7e-40 168.7 206 58.7
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 6.1e-40 168.3 208 53.4
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 6.1e-40 168.3 206 55.3
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 8.0e-40 167.9 220 50.5
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 8.0e-40 167.9 206 61.2
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 8.0e-40 167.9 206 61.2
Actinidia22131 Actinidia chinensis HOM05D003968 ORTHO05D004077 1.4e-39 167.2 207 68.6
CSS0031909 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 2.3e-39 166.4 228 48.2
Ciclev10032280m.g Citrus clementina HOM05D003968 ORTHO05D004077 5.2e-39 165.2 206 66.5
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 8.8e-39 164.5 210 47.6
FAN12G2512 Fragaria x ananassa HOM05D003968 ORTHO05D004077 1.5e-38 163.7 221 62.4
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 1.5e-38 163.7 214 57.9
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 2.6e-38 162.9 204 57.8
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 2.6e-38 162.9 210 48.6
ECA233G5077 Erigeron canadensis HOM05D003968 ORTHO05D004077 3.4e-38 162.5 205 66.3
Gorai.008G156400 Gossypium raimondii HOM05D003968 ORTHO05D004077 3.4e-38 162.5 207 64.7
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 7.5e-38 161.4 214 50.9
Gohir.D12G145000 Gossypium hirsutum HOM05D003968 ORTHO05D004077 9.8e-38 161.0 209 64.6
Gohir.A12G140400 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.3e-37 160.6 212 66.0
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 1.3e-37 160.6 233 57.5
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 1.3e-37 160.6 227 53.3
MD13G1126400 Malus domestica HOM05D003968 ORTHO05D004077 2.8e-37 159.5 219 60.7
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 3.7e-37 159.1 208 54.8
FvH4_4g23070 Fragaria vesca HOM05D003968 ORTHO05D004077 3.7e-37 159.1 224 65.6
HanXRQChr12g0362341 Helianthus annuus HOM05D003968 ORTHO05D004077 6.3e-37 158.3 203 63.5
Atru.chr11.2403 Acer truncatum HOM05D003968 ORTHO05D004077 8.3e-37 157.9 212 67.5
arahy.Tifrunner.gnm1.ann1.GKU1A2 Arachis hypogaea HOM05D003968 ORTHO05D004077 8.3e-37 157.9 225 57.8
CANSAT56G0023 Cannabis sativa HOM05D003968 ORTHO05D004077 8.3e-37 157.9 226 63.7
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 8.3e-37 157.9 198 61.6
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 1.4e-36 157.1 212 53.8
COL.COLO4_11740 Corchorus olitorius HOM05D003968 ORTHO05D004077 1.8e-36 156.8 214 60.7
arahy.Tifrunner.gnm1.ann1.25I2B1 Arachis hypogaea HOM05D003968 ORTHO05D004077 2.4e-36 156.4 218 58.3
Sed0024018 Sechium edule HOM05D003968 ORTHO05D004077 2.4e-36 156.4 217 65.4
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 2.4e-36 156.4 214 53.7
Nitab4.5_0001600g0080 Nicotiana tabacum HOM05D003968 ORTHO05D004077 3.1e-36 156.0 196 53.1
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 2.0e-35 153.3 220 54.1
Migut.K01036 Erythranthe guttata HOM05D003968 ORTHO05D004077 2.0e-35 153.3 211 53.6
Lj6C835T0 Lonicera japonica HOM05D003968 ORTHO05D004077 3.5e-35 152.5 202 52.5
HanXRQChr08g0210131 Helianthus annuus HOM05D003968 ORTHO05D004077 4.5e-35 152.1 216 63.0
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 4.5e-35 152.1 224 45.5
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 1.3e-34 150.6 202 54.0
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 1.7e-34 150.2 212 60.8
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 2.9e-34 149.4 210 54.8
FAN17G1317 Fragaria x ananassa HOM05D003968 ORTHO05D004077 6.5e-34 148.3 254 55.9
Lalb_Chr04g0257091 Lupinus albus HOM05D003968 ORTHO05D004077 3.3e-33 146.0 203 65.0
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 3.3e-33 146.0 210 41.4
Lsat_1_v5_gn_8_147160 Lactuca sativa HOM05D003968 ORTHO05D004077 4.2e-33 145.6 245 48.6
CAN.G1277.6 Capsicum annuum HOM05D003968 ORTHO05D004077 9.5e-33 144.4 210 52.4
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 1.6e-32 143.7 201 50.7
FAN07G1723 Fragaria x ananassa HOM05D003968 ORTHO05D004077 2.8e-32 142.9 246 58.5
THA.LOC104814203 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 3.6e-32 142.5 206 50.5
CDE06G0253 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 6.1e-32 141.7 203 41.9
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 6.1e-32 141.7 203 48.3
Lsat_1_v5_gn_4_1260 Lactuca sativa HOM05D003968 ORTHO05D004077 8.0e-32 141.4 200 62.5
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 6.8e-31 138.3 202 41.6
ClCG07G011730 Citrullus lanatus HOM05D003968 ORTHO05D004077 8.9e-31 137.9 206 62.6
Thhalv10017284m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 2.0e-30 136.7 202 57.9
Lalb_Chr14g0375131 Lupinus albus HOM05D003968 ORTHO05D004077 2.0e-30 136.7 196 65.8
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 2.0e-30 136.7 149 57.7
Carub.0004s1514 Capsella rubella HOM05D003968 ORTHO05D004077 3.4e-30 136.0 202 60.4
AT2G33510 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 4.4e-30 135.6 202 58.9
BcaB02g10569 Brassica carinata HOM05D003968 ORTHO05D004077 4.4e-30 135.6 206 56.8
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 4.4e-30 135.6 206 50.0
Cc11_g17440 Coffea canephora HOM05D003968 ORTHO05D004077 4.4e-30 135.6 237 54.9
AL4G29180 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 7.5e-30 134.8 202 56.9
Rhsim12G0020700 Rhododendron simsii HOM05D003968 ORTHO05D004077 9.8e-30 134.4 213 44.1
A05p12030 Brassica napus HOM05D003968 ORTHO05D004077 1.3e-29 134.0 210 56.7
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 1.7e-29 133.7 202 59.9
BcaC02g07799 Brassica carinata HOM05D003968 ORTHO05D004077 2.8e-29 132.9 203 53.7
BcaC02g11436 Brassica carinata HOM05D003968 ORTHO05D004077 2.8e-29 132.9 211 59.7
C04p15610 Brassica napus HOM05D003968 ORTHO05D004077 2.8e-29 132.9 211 59.7
DCAR_024638 Daucus carota HOM05D003968 ORTHO05D004077 3.7e-29 132.5 236 43.2
CARHR127520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 8.3e-29 131.3 199 55.8
TPR.G15634 Trifolium pratense HOM05D003968 ORTHO05D004077 8.3e-29 131.3 198 68.2
CsaV3_4G002470 Cucumis sativus L. HOM05D003968 ORTHO05D004077 1.1e-28 131.0 143 76.9
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 1.8e-28 130.2 234 41.9
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 3.1e-28 129.4 219 53.9
BcaC01g05837 Brassica carinata HOM05D003968 ORTHO05D004077 4.1e-28 129.0 210 52.4
C04p63030 Brassica napus HOM05D003968 ORTHO05D004077 4.1e-28 129.0 203 53.7
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 4.1e-28 129.0 216 48.1
BcaB01g03931 Brassica carinata HOM05D003968 ORTHO05D004077 9.2e-28 127.9 202 55.0
Sp4g15850 Schrenkiella parvula HOM05D003968 ORTHO05D004077 1.6e-27 127.1 210 51.0
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 2.7e-27 126.3 216 49.1
PSO017G3780 Papaver somniferum HOM05D003968 ORTHO05D004077 2.7e-27 126.3 203 55.7
PSO478G1150 Papaver somniferum HOM05D003968 ORTHO05D004077 2.7e-27 126.3 203 55.7
Aa31LG9G13440 Aethionema arabicum HOM05D003968 ORTHO05D004077 3.5e-27 125.9 196 51.5
C03p21930 Brassica napus HOM05D003968 ORTHO05D004077 4.5e-27 125.6 202 53.5
A03p18770 Brassica napus HOM05D003968 ORTHO05D004077 5.9e-27 125.2 202 53.5
BraA03t11137Z Brassica rapa HOM05D003968 ORTHO05D004077 7.8e-27 124.8 202 53.0
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 1.0e-26 124.4 143 58.0
A04p25820 Brassica napus HOM05D003968 ORTHO05D004077 1.7e-26 123.6 203 53.7
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 2.3e-26 123.2 239 54.0
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 3.8e-26 122.5 212 52.4
Sp1g24250 Schrenkiella parvula HOM05D003968 ORTHO05D004077 5.0e-26 122.1 212 50.5
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 5.0e-26 122.1 217 41.5
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 5.0e-26 122.1 204 40.2
BraA05t20145Z Brassica rapa HOM05D003968 ORTHO05D004077 6.6e-26 121.7 223 50.7
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 6.6e-26 121.7 202 52.5
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 1.1e-25 120.9 201 42.3
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 1.9e-25 120.2 208 38.9
BolC4t27780H Brassica oleracea HOM05D003968 ORTHO05D004077 2.5e-25 119.8 216 50.5
BolC4t23129H Brassica oleracea HOM05D003968 ORTHO05D004077 5.6e-25 118.6 224 55.4
MELO3C017796.2 Cucumis melo HOM05D003968 ORTHO05D004077 2.1e-24 116.7 158 72.2
Aa31sc415G10 Aethionema arabicum HOM05D003968 ORTHO05D004077 2.8e-24 116.3 210 49.0
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 2.8e-24 116.3 148 45.3
Thhalv10008849m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 3.6e-24 115.9 207 52.7
BraA08t34544Z Brassica rapa HOM05D003968 ORTHO05D004077 4.7e-24 115.5 202 45.0
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 1.0e-23 114.4 203 38.4
BraA04t18084Z Brassica rapa HOM05D003968 ORTHO05D004077 1.4e-23 114.0 217 50.2
PGSC0003DMG400030000 Solanum tuberosum HOM05D003968 ORTHO05D004077 1.8e-23 113.6 220 36.8
AT1G28070 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 2.3e-23 113.2 201 53.2
A07p11490 Brassica napus HOM05D003968 ORTHO05D004077 1.2e-22 110.9 197 36.5
BraA07t28938Z Brassica rapa HOM05D003968 ORTHO05D004077 1.2e-22 110.9 197 36.5
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 4.4e-22 109.0 212 50.9
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 5.8e-22 108.6 193 40.9
Carub.0001s2650 Capsella rubella HOM05D003968 ORTHO05D004077 9.8e-22 107.8 201 51.2
CARHR027520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 9.8e-22 107.8 199 46.7
BolC3t19720H Brassica oleracea HOM05D003968 ORTHO05D004077 3.7e-21 105.9 202 44.1
A08p25930 Brassica napus HOM05D003968 ORTHO05D004077 6.4e-21 105.1 202 42.6
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 1.1e-20 104.4 193 43.5
ATR0582G076 Amborella trichopoda HOM05D003968 ORTHO05D004077 1.4e-20 104.0 201 40.3
BcaC01g00004 Brassica carinata HOM05D003968 ORTHO05D004077 1.8e-20 103.6 202 43.1
SGA_v2.0_scaffold80G25944 Striga asiatica HOM05D003968 ORTHO05D004077 2.7e-19 99.8 108 55.6
C03p74720 Brassica napus HOM05D003968 ORTHO05D004077 3.0e-18 96.3 202 43.1
BcaC06g35328 Brassica carinata HOM05D003968 ORTHO05D004077 1.9e-17 93.6 197 35.0
C07p17340 Brassica napus HOM05D003968 ORTHO05D004077 1.9e-17 93.6 197 35.0
BolC7t42238H Brassica oleracea HOM05D003968 ORTHO05D004077 1.9e-17 93.6 197 35.0
BcaC05g26810 Brassica carinata HOM05D003968 ORTHO05D004077 5.6e-17 92.0 159 36.5
Gohir.D01G019600 Gossypium hirsutum HOM05D003968 ORTHO05D004077 2.1e-16 90.1 203 53.2
Gorai.002G022000 Gossypium raimondii HOM05D003968 ORTHO05D004077 2.1e-16 90.1 202 53.5
HPP92_023087 Vanilla planifolia HOM05D003968 ORTHO05D004077 3.6e-16 89.4 217 40.1
Gohir.A01G021200 Gossypium hirsutum HOM05D003968 ORTHO05D004077 8.0e-16 88.2 203 52.7
Oeu019428.1 Olea europaea HOM05D003968 ORTHO05D004077 4.0e-15 85.9 199 32.7
A09p38020 Brassica napus HOM05D003968 ORTHO05D004077 1.2e-14 84.3 149 50.3
BraA09t39312Z Brassica rapa HOM05D003968 ORTHO05D004077 1.2e-14 84.3 149 50.3
BcaC05g26624 Brassica carinata HOM05D003968 ORTHO05D004077 3.4e-14 82.8 149 51.0
C05p26740 Brassica napus HOM05D003968 ORTHO05D004077 3.4e-14 82.8 149 51.0
HPP92_006446 Vanilla planifolia HOM05D003968 ORTHO05D004077 1.9e-12 77.0 225 33.3
HPP92_011550 Vanilla planifolia HOM05D003968 ORTHO05D004077 1.2e-11 74.3 218 37.6
MBI01_g34379_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 1.6e-11 73.9 127 44.1
Os02g0516400 Oryza sativa ssp. japonica HOM05D003968 ORTHO05D004077 2.3e-10 70.1 103 44.7
BolC5t31398H Brassica oleracea HOM05D003968 ORTHO05D004077 1.1e-09 67.8 149 46.3
CDE09G1092 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 2.8e-08 63.2 206 29.1
BcaC05g26622 Brassica carinata HOM05D003968 ORTHO05D004077 1.8e-07 60.5 45 60.0
AL1G41580 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 3.4e-06 56.2 36 72.2
CDE02G1122 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 7.5e-06 55.1 148 28.4
Pp3c6_24870 Physcomitrium patens HOM05D013579 ORTHO05D015305 9.9e-06 54.7 55 45.5


User provided reference genes

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