Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048085 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 3.8e-177 624.8 331 100.0
CSS0027854 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 2.2e-172 609.0 331 97.3
Rhsim11G0095300 Rhododendron simsii HOM05D001340 ORTHO05D005342 3.6e-135 485.3 332 77.7
CSS0029007 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 5.6e-128 461.5 373 69.7
CSS0048014 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 6.2e-127 458.0 373 69.7
vmacro01564 Vaccinium macrocarpon HOM05D001340 ORTHO05D005342 4.2e-115 418.7 327 70.3
Actinidia35521 Actinidia chinensis HOM05D001340 ORTHO05D005342 6.7e-113 411.4 276 80.8
Cfa006706 Carpinus fangiana HOM05D001340 ORTHO05D002318 3.8e-108 395.6 332 64.8
Potri.013G008400 Populus trichocarpa HOM05D001340 ORTHO05D005342 1.2e-106 390.6 336 64.0
Potri.005G014100 Populus trichocarpa HOM05D001340 ORTHO05D005342 3.3e-104 382.5 332 63.3
Hma1.2p1_0008F-1.1_g005585 Hydrangea macrophylla HOM05D001340 ORTHO05D005342 1.6e-103 380.2 329 65.0
Cc02_g35070 Coffea canephora HOM05D001340 ORTHO05D005342 1.2e-98 364.0 325 62.8
CiPaw.08G155200 Carya illinoinensis HOM05D001340 ORTHO05D005342 2.7e-98 362.8 337 60.8
QL03p013901 Quercus lobata HOM05D001340 ORTHO05D005342 3.0e-97 359.4 333 60.7
TWI36G1129 Tripterygium wilfordii HOM05D001340 ORTHO05D005342 8.7e-97 357.8 327 60.6
Lj5g0005524 Lotus japonicus HOM05D001340 ORTHO05D005342 1.1e-96 357.5 324 59.6
Sabra13G0007100 Salix brachista HOM05D001340 ORTHO05D005342 1.5e-96 357.1 367 56.9
Lj5C332T2 Lonicera japonica HOM05D001340 ORTHO05D005342 4.3e-96 355.5 347 59.7
Thecc.05G323400 Theobroma cacao HOM05D001340 ORTHO05D005342 4.3e-96 355.5 327 62.7
GSVIVG01031244001 Vitis vinifera HOM05D001340 ORTHO05D002318 7.4e-96 354.8 328 62.2
Oeu000006.2 Olea europaea HOM05D001340 ORTHO05D005342 8.2e-95 351.3 326 63.5
arahy.Tifrunner.gnm1.ann1.Y2Y4QF Arachis hypogaea HOM05D001340 ORTHO05D005342 1.8e-94 350.1 329 58.7
Psat0s3278g0040 Pisum sativum HOM05D001340 ORTHO05D005342 2.6e-93 346.3 325 59.1
Cpa.g.sc48.165 Carica papaya HOM05D001340 ORTHO05D005342 2.9e-92 342.8 325 57.2
Medtr1g084100 Medicago truncatula HOM05D001340 ORTHO05D005342 2.9e-92 342.8 326 59.8
arahy.Tifrunner.gnm1.ann1.CI26SV Arachis hypogaea HOM05D001340 ORTHO05D005342 8.5e-92 341.3 331 58.0
DCAR_029350 Daucus carota HOM05D001340 ORTHO05D005342 1.1e-91 340.9 330 60.6
Gorai.007G306700 Gossypium raimondii HOM05D001340 ORTHO05D005342 2.5e-91 339.7 336 58.3
Gohir.D11G283800 Gossypium hirsutum HOM05D001340 ORTHO05D005342 3.2e-91 339.3 336 58.3
Nitab4.5_0000155g0120 Nicotiana tabacum HOM05D001340 ORTHO05D005342 3.2e-91 339.3 328 61.6
Peaxi162Scf00595g00424 Petunia axillaris HOM05D001340 ORTHO05D005342 1.0e-89 334.3 329 60.2
MSTRG.20379 Avicennia marina HOM05D001340 ORTHO05D005342 6.7e-89 331.6 332 59.3
Nn4g25585 Nelumbo nucifera HOM05D001340 ORTHO05D005342 3.3e-88 329.3 335 55.2
Migut.B00963 Erythranthe guttata HOM05D001340 ORTHO05D005342 4.3e-88 328.9 321 60.7
MD12G1205500 Malus domestica HOM05D001340 ORTHO05D005342 7.4e-88 328.2 323 58.8
Eucgr.L00263 Eucalyptus grandis HOM05D001340 ORTHO05D005342 2.2e-87 326.6 333 55.0
Lalb_Chr02g0147791 Lupinus albus HOM05D001340 ORTHO05D005342 4.8e-87 325.5 327 56.9
Manes.09G177200 Manihot esculenta HOM05D001340 ORTHO05D005342 4.8e-87 325.5 335 55.8
Sopen10g015810 Solanum pennellii HOM05D001340 ORTHO05D005342 6.3e-87 325.1 333 58.9
Ciclev10003914m.g Citrus clementina HOM05D001340 ORTHO05D002318 3.1e-86 322.8 333 58.0
Lj5g0009841 Lotus japonicus HOM05D001340 ORTHO05D005342 3.1e-86 322.8 331 55.9
Solyc10g045540.2 Solanum lycopersicum HOM05D001340 ORTHO05D005342 3.1e-86 322.8 333 57.7
MELO3C004179.2 Cucumis melo HOM05D001340 ORTHO05D005342 4.5e-85 318.9 335 55.8
AT1G56440 Arabidopsis thaliana HOM05D001340 ORTHO05D005342 5.9e-85 318.5 352 52.0
Sed0025878 Sechium edule HOM05D001340 ORTHO05D005342 7.7e-85 318.2 332 55.7
CsaV3_2G007140 Cucumis sativus L. HOM05D001340 ORTHO05D005342 1.0e-84 317.8 335 54.6
Atru.chr2.201 Acer truncatum HOM05D001340 ORTHO05D005342 2.2e-84 316.6 338 57.7
Dinv30896 Davidia involucrata HOM05D000961 ORTHO05D000841 2.2e-84 316.6 338 57.1
Aa31LG2G11470 Aethionema arabicum HOM05D001340 ORTHO05D005342 5.0e-84 315.5 347 53.0
SalBow7G3618 Salvia bowleyana HOM05D001340 ORTHO05D005342 5.0e-84 315.5 326 58.3
CARHR055170 Cardamine hirsuta HOM05D001340 ORTHO05D005342 1.4e-83 313.9 352 51.7
RcHm_v2.0_Chr3g0457141 Rosa chinensis HOM05D001340 ORTHO05D005342 1.4e-83 313.9 325 56.3
FAN05G0225 Fragaria x ananassa HOM05D001340 ORTHO05D005342 2.5e-83 313.2 321 56.7
SGA_v2.0_scaffold4G01971 Striga asiatica HOM05D001340 ORTHO05D005342 2.5e-83 313.2 335 58.8
A03p66580 Brassica napus HOM05D001340 ORTHO05D005342 3.2e-83 312.8 342 52.9
Hund07313 Selenicereus undatus HOM05D001340 ORTHO05D005342 4.2e-83 312.4 342 52.6
TAR633G1496 Trochodendron aralioides HOM05D000961 ORTHO05D000841 4.2e-83 312.4 292 63.0
BcaC02g10729 Brassica carinata HOM05D001340 ORTHO05D005342 5.5e-83 312.0 341 52.5
COL.COLO4_05548 Corchorus olitorius HOM05D001340 ORTHO05D005342 7.2e-83 311.6 336 55.4
Dinv24447 Davidia involucrata HOM05D000961 ORTHO05D000841 9.4e-83 311.2 321 58.3
PSO170G0183 Papaver somniferum HOM05D001340 ORTHO05D005342 1.2e-82 310.8 331 54.4
Carub.0002s0770 Capsella rubella HOM05D001340 ORTHO05D005342 1.6e-82 310.5 354 51.4
ClCG02G014870 Citrullus lanatus HOM05D001340 ORTHO05D005342 2.1e-82 310.1 328 54.3
FAN14G4490 Fragaria x ananassa HOM05D001340 ORTHO05D005342 3.6e-82 309.3 327 56.6
BraA03t15714Z Brassica rapa HOM05D001340 ORTHO05D005342 7.9e-82 308.1 336 53.3
HanXRQChr06g0173421 Helianthus annuus HOM05D001340 ORTHO05D005342 7.9e-82 308.1 327 55.7
C04p27080 Brassica napus HOM05D001340 ORTHO05D005342 1.0e-81 307.8 333 53.2
BolC4t24084H Brassica oleracea HOM05D001340 ORTHO05D005342 1.0e-81 307.8 333 53.2
Phvul.007G201600 Phaseolus vulgaris HOM05D001340 ORTHO05D005342 1.0e-81 307.8 332 54.2
CANSAT54G2301 Cannabis sativa HOM05D001340 ORTHO05D005342 1.4e-81 307.4 331 53.2
TPR.G2618 Trifolium pratense HOM05D001340 ORTHO05D005342 1.4e-81 307.4 325 53.8
AL1G66140 Arabidopsis lyrata HOM05D001340 ORTHO05D005342 1.8e-81 307.0 349 51.0
Sp2g06370 Schrenkiella parvula HOM05D001340 ORTHO05D005342 1.8e-81 307.0 352 50.6
FAN09G1839 Fragaria x ananassa HOM05D001340 ORTHO05D005342 2.3e-81 306.6 327 56.6
VMungo0720G0959 Vigna mungo HOM05D001340 ORTHO05D005342 2.3e-81 306.6 330 53.0
Gohir.A11G273700 Gossypium hirsutum HOM05D001340 ORTHO05D005342 1.1e-80 304.3 300 60.0
BcaB04g20162 Brassica carinata HOM05D001340 ORTHO05D005342 2.0e-80 303.5 337 51.3
Glyma.10G146800 Glycine max HOM05D001340 ORTHO05D005342 2.0e-80 303.5 325 52.6
PSO357G0240 Papaver somniferum HOM05D001340 ORTHO05D005342 4.4e-80 302.4 326 54.3
Ca_10175_v3 Cicer arietinum L. HOM05D001340 ORTHO05D005342 7.4e-80 301.6 327 53.8
FAN02G4226 Fragaria x ananassa HOM05D001340 ORTHO05D005342 1.7e-79 300.4 327 55.4
PGR083G1716 Punica granatum HOM05D001340 ORTHO05D005342 1.7e-79 300.4 336 53.3
Sabra05G0009600 Salix brachista HOM05D001340 ORTHO05D005342 1.7e-79 300.4 336 54.2
Thhalv10023436m.g Eutrema salsugineum HOM05D001340 ORTHO05D005342 3.7e-79 299.3 351 49.9
Glyma.20G096900 Glycine max HOM05D001340 ORTHO05D005342 4.5e-77 292.4 327 52.0
THA.LOC104816892 Tarenaya hassleriana HOM05D001340 ORTHO05D005342 1.0e-76 291.2 342 50.3
BolC1t03489H Brassica oleracea HOM05D001340 ORTHO05D005342 5.0e-76 288.9 362 47.8
BcaC09g49556 Brassica carinata HOM05D001340 ORTHO05D005342 8.5e-76 288.1 339 48.7
Ah.04g158660 Amaranthus hybridus HOM05D001340 ORTHO05D005342 1.1e-75 287.7 330 49.7
BraA01t02887Z Brassica rapa HOM05D001340 ORTHO05D005342 1.5e-75 287.3 363 46.6
ATR0796G093 Amborella trichopoda HOM05D001340 ORTHO05D005342 3.2e-75 286.2 340 49.7
A01p27480 Brassica napus HOM05D001340 ORTHO05D005342 2.7e-74 283.1 331 48.0
C01p35320 Brassica napus HOM05D001340 ORTHO05D005342 6.1e-74 282.0 341 49.0
Lsat_1_v5_gn_9_121900 Lactuca sativa HOM05D001340 ORTHO05D005342 1.5e-72 277.3 321 52.3
Aqoxy7G01123 Aquilegia oxysepala HOM05D001340 ORTHO05D005342 2.2e-71 273.5 330 49.4
MBI19_g40070_MAGBIO Magnolia biondii HOM05D001340 ORTHO05D005342 2.8e-71 273.1 341 48.1
unitig_46.g18366 Utricularia gibba HOM05D001340 ORTHO05D005342 1.8e-70 270.4 328 51.5
Duzib106G0021 Durio zibethinus HOM05D001340 ORTHO05D005342 1.6e-69 267.3 335 50.4
EL10Ac4g09460 Beta vulgaris HOM05D001340 ORTHO05D005342 6.5e-68 261.9 331 47.7
ECA233G1072 Erigeron canadensis HOM05D004203 ORTHO05D004830 7.5e-64 248.4 317 48.6
Sc09g0002630 Simmondsia chinensis HOM05D001340 ORTHO05D005342 7.5e-64 248.4 298 52.7
Sabra05G0022300 Salix brachista HOM05D001340 ORTHO05D005342 9.8e-64 248.1 302 52.3
QL03p014779 Quercus lobata HOM05D001340 ORTHO05D005342 8.3e-63 245.0 207 64.3
Sabra05G0010800 Salix brachista HOM05D001340 ORTHO05D005342 1.4e-62 244.2 295 52.5
FvH4_6g07471 Fragaria vesca HOM05D001340 ORTHO05D005342 9.1e-62 241.5 258 57.0
AUR62006743 Chenopodium quinoa HOM05D001340 ORTHO05D005342 6.5e-60 235.3 295 49.2
Glyma.20G097300 Glycine max HOM05D001340 ORTHO05D005342 6.5e-60 235.3 258 53.9
AUR62000388 Chenopodium quinoa HOM05D001340 ORTHO05D005342 1.9e-59 233.8 300 50.0
CDE01G0158 Ceratophyllum demersum HOM05D000961 ORTHO05D000841 9.5e-59 231.5 322 44.4
HPP92_013522 Vanilla planifolia HOM05D001340 ORTHO05D005342 2.7e-58 229.9 327 44.3
Os05g0129900 Oryza sativa ssp. japonica HOM05D001340 ORTHO05D005342 1.0e-57 228.0 328 43.3
RcHm_v2.0_Chr3g0457171 Rosa chinensis HOM05D001340 ORTHO05D005342 2.2e-55 220.3 263 53.2
QL03p008578 Quercus lobata HOM05D001340 ORTHO05D005342 3.5e-53 213.0 233 54.1
QL03p008601 Quercus lobata HOM05D001340 ORTHO05D005342 3.3e-51 206.5 165 63.0
Prupe.6G312500 Prunus persica HOM05D001340 ORTHO05D002318 1.0e-49 201.4 246 52.0
Zm00001eb354870 Zea mays HOM05D001340 ORTHO05D005342 1.2e-48 198.0 329 39.5
QL03p013877 Quercus lobata HOM05D001340 ORTHO05D005342 3.4e-48 196.4 256 49.2
Peaxi162Scf00750g00034 Petunia axillaris HOM05D001340 ORTHO05D005342 7.0e-46 188.7 346 42.2
Mapoly0127s0050 Marchantia polymorpha HOM05D001340 ORTHO05D005342 1.6e-42 177.6 334 35.9
Glyma.06G236676 Glycine max HOM05D000961 ORTHO05D005342 6.2e-42 175.6 237 47.7
CSS0004963 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 3.1e-41 173.3 123 81.3
Sabra05G0021500 Salix brachista HOM05D001340 ORTHO05D005342 1.7e-39 167.5 291 40.5
Prupe.3G076000 Prunus persica HOM05D001340 ORTHO05D005342 1.4e-38 164.5 177 52.5
Pp3c24_17620 Physcomitrium patens HOM05D001340 ORTHO05D005342 1.9e-38 164.1 416 31.5
TAR706G0001 Trochodendron aralioides HOM05D001340 ORTHO05D005342 1.0e-36 158.3 178 56.7
Sabra05G0010200 Salix brachista HOM05D001340 ORTHO05D005342 1.1e-35 154.8 357 37.5
QL03p014849 Quercus lobata HOM05D001340 ORTHO05D005342 9.5e-35 151.8 165 49.1
SMO119G0158 Selaginella moellendorffii HOM05D001340 ORTHO05D005342 4.7e-34 149.4 333 30.9
SEGI_27730 Sequoiadendron giganteum HOM05D001340 ORTHO05D005342 2.6e-32 143.7 280 35.0
Gorai.009G392200 Gossypium raimondii HOM05D001340 ORTHO05D005342 2.9e-31 140.2 96 69.8
AagrBONN_evm.TU.Sc2ySwM_340.376 Anthoceros agrestis HOM05D001340 ORTHO05D005342 6.4e-31 139.0 334 32.6
Nitab4.5_0007698g0020 Nicotiana tabacum HOM05D001340 ORTHO05D005342 2.4e-30 137.1 154 60.4
Gohir.D10G111266 Gossypium hirsutum HOM05D001340 ORTHO05D005342 1.2e-29 134.8 96 66.7
CAN.G1.66 Capsicum annuum HOM05D001340 ORTHO05D005342 2.3e-28 130.6 113 68.1
QL03p013832 Quercus lobata HOM05D001340 ORTHO05D005342 3.9e-28 129.8 177 49.7
QL03p014812 Quercus lobata HOM05D001340 ORTHO05D025918 6.2e-26 122.5 169 50.9
PSO541G4969 Papaver somniferum HOM05D001340 ORTHO05D005342 8.6e-20 102.1 75 70.7
CBR_g45761 Chara braunii HOM05D001340 ORTHO05D005342 2.6e-16 90.5 149 34.9
CBR_g18648 Chara braunii HOM05D001340 ORTHO05D005342 9.9e-16 88.6 364 26.1
CBR_g48354 Chara braunii HOM05D001340 ORTHO05D005342 2.2e-15 87.4 130 36.2
Haze_04058 Corylus avellana HOM05D001340 ORTHO05D005342 8.4e-15 85.5 126 44.4
EL10Ac3g04962 Beta vulgaris HOM05D001340 ORTHO05D005342 1.4e-14 84.7 82 57.3
AUR62031620 Chenopodium quinoa HOM05D001340 ORTHO05D005342 4.2e-14 83.2 68 60.3
Nn1g02026 Nelumbo nucifera HOM05D001340 ORTHO05D005342 5.4e-14 82.8 67 65.7
EL10Ac1g01661 Beta vulgaris HOM05D001340 ORTHO05D005342 7.1e-14 82.4 73 56.2
PRCOL_00000652 Prasinoderma coloniale HOM05D001340 ORTHO05D005342 1.2e-13 81.6 388 26.0
AUR62015660 Chenopodium quinoa HOM05D001340 ORTHO05D005342 6.0e-13 79.3 116 44.0
CBR_g3787 Chara braunii HOM05D001340 ORTHO05D005342 1.7e-12 77.8 460 23.9
RcHm_v2.0_Chr3g0457161 Rosa chinensis HOM05D001340 ORTHO05D005342 2.3e-12 77.4 65 53.8
AUR62015688 Chenopodium quinoa HOM05D001340 ORTHO05D005342 3.0e-12 77.0 69 53.6
Gorai.005G157900 Gossypium raimondii HOM05D001340 ORTHO05D005342 1.5e-11 74.7 94 46.8
AUR62015693 Chenopodium quinoa HOM05D001340 ORTHO05D005342 1.9e-11 74.3 70 55.7
PGSC0003DMG400008293 Solanum tuberosum HOM05D001340 ORTHO05D005342 1.8e-09 67.8 64 60.9
Cre02.g084900 Chlamydomonas reinhardtii HOM05D001340 ORTHO05D005342 1.2e-08 65.1 353 24.1
EL10Ac5g11565 Beta vulgaris HOM05D001310 ORTHO05D001283 2.9e-07 60.5 67 46.3
Pp3c21_15890 Physcomitrium patens HOM05D001310 ORTHO05D001283 4.9e-07 59.7 65 50.8
SGA_v2.0_scaffold36G14382 Striga asiatica HOM05D001310 ORTHO05D001283 6.4e-07 59.3 67 44.8
Lj5C158T11 Lonicera japonica HOM05D001310 ORTHO05D001283 8.4e-07 58.9 67 44.8
TWI59G1224 Tripterygium wilfordii HOM05D001310 ORTHO05D001283 8.4e-07 58.9 53 52.8
Pp3c7_6470 Physcomitrium patens HOM05D001310 ORTHO05D001283 1.1e-06 58.5 65 50.8
COL.COLO4_04375 Corchorus olitorius HOM05D001310 ORTHO05D001283 1.4e-06 58.2 53 52.8
HanXRQChr05g0142641 Helianthus annuus HOM05D001310 ORTHO05D001283 1.9e-06 57.8 53 52.8
Nitab4.5_0004556g0020 Nicotiana tabacum HOM05D001310 ORTHO05D001283 1.9e-06 57.8 66 43.9
SEGI_22675 Sequoiadendron giganteum HOM05D001310 ORTHO05D001283 2.4e-06 57.4 53 49.1
MD06G1227100 Malus domestica HOM05D001310 ORTHO05D001283 3.2e-06 57.0 67 44.8
SalBow5G0105 Salvia bowleyana HOM05D001310 ORTHO05D001283 3.2e-06 57.0 53 49.1
Sopen10g017560 Solanum pennellii HOM05D001310 ORTHO05D001283 3.2e-06 57.0 53 50.9
CANSAT80G2848 Cannabis sativa HOM05D001310 ORTHO05D001283 4.2e-06 56.6 53 52.8
CAN.G1.39 Capsicum annuum HOM05D001310 ORTHO05D001283 4.2e-06 56.6 53 50.9
Aa31LG3G17590 Aethionema arabicum HOM05D001310 ORTHO05D001283 5.4e-06 56.2 56 50.0
Peaxi162Scf00683g00463 Petunia axillaris HOM05D001310 ORTHO05D001283 5.4e-06 56.2 53 50.9
Migut.B00605 Erythranthe guttata HOM05D001310 ORTHO05D001283 7.1e-06 55.8 53 49.1
Migut.D01540 Erythranthe guttata HOM05D001310 ORTHO05D001283 7.1e-06 55.8 66 42.4
Lj5A239G80 Lonicera japonica HOM05D001310 ORTHO05D001283 9.3e-06 55.5 53 49.1
MD14G1236500 Malus domestica HOM05D001310 ORTHO05D001283 9.3e-06 55.5 66 43.9
Medtr8g107280 Medicago truncatula HOM05D001310 ORTHO05D001283 9.3e-06 55.5 66 40.9


User provided reference genes

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