Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048067 Camellia sinensis var. sinensis HOM05D004533 ORTHO05D005347 1.1e-149 533.5 309 100.0
Duzib248G0866 Durio zibethinus HOM05D004533 ORTHO05D005347 9.4e-77 291.2 319 61.1
Haze_11876 Corylus avellana HOM05D004533 ORTHO05D005347 3.9e-75 285.8 331 60.7
QL03p073504 Quercus lobata HOM05D004533 ORTHO05D005347 2.8e-73 279.6 341 59.8
Manes.01G025900 Manihot esculenta HOM05D004533 ORTHO05D005347 5.3e-72 275.4 333 58.0
Gohir.A03G105900 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.3e-70 270.8 333 50.5
Dinv20147 Davidia involucrata HOM05D004533 ORTHO05D005347 2.9e-70 269.6 323 62.5
Gohir.D02G131100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 8.5e-70 268.1 329 57.8
Gohir.D13G084000 Gossypium hirsutum HOM05D004533 ORTHO05D005347 8.0e-68 261.5 329 59.0
Gorai.013G095800 Gossypium raimondii HOM05D004533 ORTHO05D005347 8.0e-68 261.5 329 59.0
Gorai.005G147000 Gossypium raimondii HOM05D004533 ORTHO05D005347 1.1e-66 257.7 328 57.0
Gohir.A13G084500 Gossypium hirsutum HOM05D004533 ORTHO05D005347 5.7e-66 255.4 329 56.8
Thecc.02G326400 Theobroma cacao HOM05D004533 ORTHO05D005347 3.7e-65 252.7 335 56.7
Duzib268G0904 Durio zibethinus HOM05D004533 ORTHO05D005347 9.1e-64 248.1 335 53.4
Duzib251G0596 Durio zibethinus HOM05D004533 ORTHO05D005347 1.2e-63 247.7 335 56.7
Dinv34043 Davidia involucrata HOM05D004533 ORTHO05D005347 3.8e-62 242.7 320 57.8
Sabra10G0118800 Salix brachista HOM05D004533 ORTHO05D005347 3.8e-62 242.7 336 55.1
TAR629G1049 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.9e-61 240.4 341 48.1
Manes.05G112100 Manihot esculenta HOM05D004533 ORTHO05D005347 1.2e-60 237.7 331 53.2
Cfa008857 Carpinus fangiana HOM05D004533 ORTHO05D005347 1.6e-60 237.3 331 55.6
Hma1.2p1_3075F.1_g332390 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 4.7e-60 235.7 349 47.0
Potri.010G154200 Populus trichocarpa HOM05D004533 ORTHO05D005347 8.0e-60 235.0 342 52.9
Lj2g0015000 Lotus japonicus HOM05D004533 ORTHO05D005347 4.0e-59 232.6 333 56.2
CiPaw.05G123000 Carya illinoinensis HOM05D004533 ORTHO05D005347 6.8e-59 231.9 332 54.2
Phvul.003G039500 Phaseolus vulgaris HOM05D004533 ORTHO05D005347 1.2e-58 231.1 350 53.7
Cc11_g11730 Coffea canephora HOM05D004533 ORTHO05D005347 1.1e-56 224.6 320 52.8
Rhsim09G0125000 Rhododendron simsii HOM05D004533 ORTHO05D005347 1.4e-56 224.2 332 56.9
Lalb_Chr10g0099071 Lupinus albus HOM05D004533 ORTHO05D005347 1.2e-55 221.1 336 55.1
TAR371G0131 Trochodendron aralioides HOM05D004533 ORTHO05D005347 2.0e-55 220.3 321 53.9
Medtr5g046750 Medicago truncatula HOM05D004533 ORTHO05D005347 3.8e-54 216.1 320 57.2
Lalb_Chr17g0341371 Lupinus albus HOM05D004533 ORTHO05D005347 5.0e-54 215.7 319 54.9
Psat2g098360 Pisum sativum HOM05D004533 ORTHO05D005347 1.9e-53 213.8 320 53.4
Potri.008G098200 Populus trichocarpa HOM05D004533 ORTHO05D005347 2.5e-53 213.4 341 51.6
Prupe.1G290400 Prunus persica HOM05D004533 ORTHO05D005347 2.5e-53 213.4 356 52.5
Aqoxy3G03701 Aquilegia oxysepala HOM05D004533 ORTHO05D005347 3.2e-53 213.0 335 51.0
Glyma.01G063800 Glycine max HOM05D004533 ORTHO05D005347 1.8e-51 207.2 364 48.9
Nn4g23503 Nelumbo nucifera HOM05D004533 ORTHO05D005347 6.8e-51 205.3 344 50.0
Actinidia26533 Actinidia chinensis HOM05D004533 ORTHO05D005347 8.8e-51 204.9 310 56.1
Ciclev10032087m.g Citrus clementina HOM05D004533 ORTHO05D005347 1.5e-50 204.1 340 51.5
TPR.G38582 Trifolium pratense HOM05D004533 ORTHO05D005347 1.5e-50 204.1 314 56.1
CiPaw.06G093700 Carya illinoinensis HOM05D004533 ORTHO05D005347 5.7e-50 202.2 340 52.1
Sabra08G0074200 Salix brachista HOM05D004533 ORTHO05D005347 2.2e-49 200.3 342 51.2
Ca_05043_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 2.8e-49 199.9 319 55.5
Ca_19594_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 2.8e-49 199.9 319 55.5
Oeu048133.1 Olea europaea HOM05D004533 ORTHO05D005347 9.2e-48 194.9 310 48.4
Oeu048134.1 Olea europaea HOM05D004533 ORTHO05D005347 9.2e-48 194.9 310 48.4
Glyma.02G121400 Glycine max HOM05D004533 ORTHO05D005347 2.0e-47 193.7 360 47.8
Hma1.2p1_0473F.1_g160260 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 4.5e-47 192.6 323 43.7
vmacro01308 Vaccinium macrocarpon HOM05D004533 ORTHO05D005347 1.3e-46 191.0 331 47.1
PSO478G4496 Papaver somniferum HOM05D004533 ORTHO05D005347 2.3e-46 190.3 346 38.7
Actinidia19907 Actinidia chinensis HOM05D004533 ORTHO05D005347 2.9e-46 189.9 301 54.5
PSO017G3527 Papaver somniferum HOM05D004533 ORTHO05D005347 6.6e-46 188.7 338 39.1
Hma1.2p1_0428F.1_g151070 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 8.6e-46 188.3 269 45.7
TAR374G1471 Trochodendron aralioides HOM05D004533 ORTHO05D005347 2.5e-45 186.8 269 46.5
Cpa.g.sc1.160 Carica papaya HOM05D004533 ORTHO05D005347 5.6e-45 185.7 340 50.0
Gorai.008G175700 Gossypium raimondii HOM05D004533 ORTHO05D005347 3.6e-44 183.0 311 39.5
Rhsim12G0073600 Rhododendron simsii HOM05D004533 ORTHO05D005347 1.4e-43 181.0 321 44.5
Gohir.A12G159800 Gossypium hirsutum HOM05D004533 ORTHO05D005347 3.0e-43 179.9 307 48.2
Oeu028724.1 Olea europaea HOM05D004533 ORTHO05D005347 3.0e-43 179.9 309 44.0
VMungo1215G1442 Vigna mungo HOM05D004533 ORTHO05D005347 8.9e-43 178.3 226 59.7
COL.COLO4_27845 Corchorus olitorius HOM05D004533 ORTHO05D005347 1.2e-42 177.9 350 48.0
Gohir.D12G163100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.5e-42 177.6 295 47.1
Actinidia16147 Actinidia chinensis HOM05D004533 ORTHO05D005347 2.0e-42 177.2 310 52.6
TWI79G0987 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 2.0e-42 177.2 327 52.3
MSTRG.2297 Avicennia marina HOM05D004533 ORTHO05D005347 2.6e-42 176.8 332 39.2
Peaxi162Scf00175g00062 Petunia axillaris HOM05D004533 ORTHO05D005347 7.5e-42 175.3 330 41.2
MD16G1058700 Malus domestica HOM05D004533 ORTHO05D005347 2.9e-41 173.3 332 48.5
Eucgr.B03139 Eucalyptus grandis HOM05D004533 ORTHO05D005347 3.7e-41 172.9 344 50.6
FAN22G0793 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.8e-40 170.6 338 49.4
Oeu020361.1 Olea europaea HOM05D004533 ORTHO05D005347 5.4e-40 169.1 286 46.9
Atru.chr11.1592 Acer truncatum HOM05D004533 ORTHO05D005347 7.0e-40 168.7 325 47.1
TWI75G1153 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 1.2e-39 167.9 311 50.2
TWI31G0640 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 2.0e-39 167.2 316 50.0
FAN17G0049 Fragaria x ananassa HOM05D004533 ORTHO05D005347 5.9e-39 165.6 338 48.8
MBI16_g39936_MAGBIO Magnolia biondii HOM05D004533 ORTHO05D005347 2.3e-38 163.7 312 43.9
MD13G1059400 Malus domestica HOM05D004533 ORTHO05D005347 3.0e-38 163.3 334 46.4
FvH4_4g29630 Fragaria vesca HOM05D004533 ORTHO05D005347 5.0e-38 162.5 340 48.8
FAN12G3098 Fragaria x ananassa HOM05D004533 ORTHO05D005347 5.0e-38 162.5 340 48.8
ClCG08G010520 Citrullus lanatus HOM05D004533 ORTHO05D005347 6.6e-38 162.2 342 41.2
MSTRG.13457 Avicennia marina HOM05D004533 ORTHO05D005347 1.5e-37 161.0 327 45.0
MELO3C011411.2 Cucumis melo HOM05D004533 ORTHO05D005347 1.5e-37 161.0 346 40.5
FAN07G1881 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.9e-37 160.6 341 48.4
CsaV3_6G033770 Cucumis sativus L. HOM05D004533 ORTHO05D005347 9.5e-37 158.3 343 40.2
Actinidia13399 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.6e-36 157.5 223 58.3
arahy.Tifrunner.gnm1.ann1.PV72KB Arachis hypogaea HOM05D004533 ORTHO05D005347 1.6e-36 157.5 366 44.5
Nitab4.5_0006154g0010 Nicotiana tabacum HOM05D004533 ORTHO05D005347 8.0e-36 155.2 306 48.7
RcHm_v2.0_Chr4g0437861 Rosa chinensis HOM05D004533 ORTHO05D005347 1.8e-35 154.1 342 50.9
Sed0020971 Sechium edule HOM05D004533 ORTHO05D005347 5.2e-35 152.5 325 39.1
arahy.Tifrunner.gnm1.ann1.NK9Z7F Arachis hypogaea HOM05D004533 ORTHO05D005347 1.5e-34 151.0 365 44.1
ECA233G1177 Erigeron canadensis HOM05D004533 ORTHO05D005347 5.8e-34 149.1 336 40.8
DCAR_023748 Daucus carota HOM05D004533 ORTHO05D005347 2.0e-31 140.6 349 40.1
Lj6P776T6 Lonicera japonica HOM05D004533 ORTHO05D005347 3.5e-31 139.8 180 51.7
Ah.03g138730 Amaranthus hybridus HOM05D004533 ORTHO05D005347 4.6e-31 139.4 323 42.1
Nitab4.5_0000027g0050 Nicotiana tabacum HOM05D004533 ORTHO05D005347 3.9e-30 136.3 307 46.9
Sc11g0002570 Simmondsia chinensis HOM05D004533 ORTHO05D005347 5.0e-30 136.0 329 45.9
Solyc05g012030.1 Solanum lycopersicum HOM05D004533 ORTHO05D005347 8.6e-30 135.2 323 45.5
THA.LOC104798855 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 1.1e-29 134.8 333 42.0
THA.LOC104803161 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 1.1e-29 134.8 333 42.0
THA.LOC104822894 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 1.1e-29 134.8 333 42.0
ATR0827G049 Amborella trichopoda HOM05D004533 ORTHO05D005347 5.6e-29 132.5 315 40.6
DCAR_026684 Daucus carota HOM05D004533 ORTHO05D005347 1.2e-28 131.3 346 35.0
ECA234G4159 Erigeron canadensis HOM05D004533 ORTHO05D005347 1.6e-28 131.0 333 36.0
Lsat_1_v5_gn_8_45920 Lactuca sativa HOM05D004533 ORTHO05D005347 3.6e-28 129.8 333 42.6
PGSC0003DMG400028307 Solanum tuberosum HOM05D004533 ORTHO05D005347 1.1e-27 128.3 330 38.5
MSTRG.7732 Avicennia marina HOM05D004533 ORTHO05D005347 6.8e-27 125.6 321 43.9
DCAR_030051 Daucus carota HOM05D004533 ORTHO05D005347 2.6e-26 123.6 338 36.7
Lsat_1_v5_gn_4_11700 Lactuca sativa HOM05D004533 ORTHO05D005347 7.5e-26 122.1 342 38.9
EL10Ac6g15027 Beta vulgaris HOM05D004533 ORTHO05D005347 1.3e-25 121.3 227 41.0
HanXRQChr12g0363201 Helianthus annuus HOM05D004533 ORTHO05D005347 8.3e-25 118.6 323 39.0
Sopen05g006810 Solanum pennellii HOM05D004533 ORTHO05D005347 1.4e-24 117.9 232 51.3
Ah.02g126770 Amaranthus hybridus HOM05D004533 ORTHO05D005347 2.4e-24 117.1 320 35.6
ClCG05G023610 Citrullus lanatus HOM05D004533 ORTHO05D005347 7.1e-24 115.5 320 40.6
Carub.0002s1576 Capsella rubella HOM05D004533 ORTHO05D005347 1.7e-22 110.9 328 35.4
SGA_v2.0_scaffold287G47174 Striga asiatica HOM05D004533 ORTHO05D005347 2.3e-22 110.5 316 41.1
BraA02t06624Z Brassica rapa HOM05D004533 ORTHO05D005347 3.9e-22 109.8 336 37.5
A02p15640 Brassica napus HOM05D004533 ORTHO05D005347 6.6e-22 109.0 336 39.0
C02p26000 Brassica napus HOM05D004533 ORTHO05D005347 1.1e-21 108.2 333 39.3
Sc04g0007440 Simmondsia chinensis HOM05D004533 ORTHO05D005347 1.1e-21 108.2 305 44.6
BcaB03g15876 Brassica carinata HOM05D004533 ORTHO05D005347 1.9e-21 107.5 339 37.5
BolC2t08676H Brassica oleracea HOM05D004533 ORTHO05D005347 1.9e-21 107.5 333 40.2
Thhalv10018878m.g Eutrema salsugineum HOM05D004533 ORTHO05D005347 2.5e-21 107.1 335 39.7
THA.LOC104821996 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 2.5e-21 107.1 320 39.4
CsaV3_5G033410 Cucumis sativus L. HOM05D004533 ORTHO05D005347 3.3e-21 106.7 303 33.0
BcaC08g46370 Brassica carinata HOM05D004533 ORTHO05D005347 5.6e-21 105.9 330 37.3
BolC6t39358H Brassica oleracea HOM05D004533 ORTHO05D005347 5.6e-21 105.9 330 37.3
Nn3g17512 Nelumbo nucifera HOM05D004533 ORTHO05D005347 5.6e-21 105.9 314 39.5
C06p40740 Brassica napus HOM05D004533 ORTHO05D005347 9.5e-21 105.1 330 38.8
AL2G28250 Arabidopsis lyrata HOM05D004533 ORTHO05D005347 3.6e-20 103.2 338 35.8
MELO3C012160.2 Cucumis melo HOM05D004533 ORTHO05D005347 3.6e-20 103.2 305 35.1
AT1G69160 Arabidopsis thaliana HOM05D004533 ORTHO05D005347 4.7e-20 102.8 333 35.7
A07p35490 Brassica napus HOM05D004533 ORTHO05D005347 4.7e-20 102.8 332 35.8
Sp5g24200 Schrenkiella parvula HOM05D004533 ORTHO05D005347 4.7e-20 102.8 319 37.6
BraA07t31139Z Brassica rapa HOM05D004533 ORTHO05D005347 8.1e-20 102.1 332 36.7
Migut.E00039 Erythranthe guttata HOM05D004533 ORTHO05D005347 8.1e-20 102.1 302 40.7
PGR102G1315 Punica granatum HOM05D004533 ORTHO05D005347 8.1e-20 102.1 329 37.4
CANSAT64G2295 Cannabis sativa HOM05D004533 ORTHO05D005347 1.4e-19 101.3 393 39.7
Aa31LG4G11830 Aethionema arabicum HOM05D004533 ORTHO05D005347 2.3e-19 100.5 296 44.9
CARHR062030 Cardamine hirsuta HOM05D004533 ORTHO05D005347 3.1e-19 100.1 332 37.7
BcaC03g15057 Brassica carinata HOM05D004533 ORTHO05D005347 5.2e-19 99.4 333 39.0
Sed0009680 Sechium edule HOM05D004533 ORTHO05D005347 7.6e-18 95.5 307 33.2
PGR119G0103 Punica granatum HOM05D004533 ORTHO05D005347 2.2e-17 94.0 332 43.4
PSO063G5982 Papaver somniferum HOM05D004533 ORTHO05D005347 1.9e-13 80.9 356 33.7
CDE02G4104 Ceratophyllum demersum HOM05D004533 ORTHO05D005347 1.6e-12 77.8 293 29.4
DCAR_007202 Daucus carota HOM05D004533 ORTHO05D005347 2.1e-12 77.4 301 31.2
PSO782G4709 Papaver somniferum HOM05D004533 ORTHO05D005347 4.7e-12 76.3 336 36.0
GSVIVG01012248001 Vitis vinifera HOM05D004533 ORTHO05D005347 6.9e-11 72.4 74 51.4
Migut.L01171 Erythranthe guttata HOM05D004533 ORTHO05D005347 1.1e-08 65.1 165 37.6
CDE05G0386 Ceratophyllum demersum HOM05D004533 ORTHO05D005347 2.3e-06 57.4 96 36.5
TAR629G3385 Trochodendron aralioides HOM05D004533 ORTHO05D005347 8.7e-06 55.5 132 35.6


User provided reference genes

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