Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048062 Camellia sinensis var. sinensis HOM05D005797 ORTHO05D006479 5.9e-45 183.7 87 100.0
CSS0021207 Camellia sinensis var. sinensis HOM05D005797 ORTHO05D006479 4.0e-41 171.0 85 95.3
CSS0032554 Camellia sinensis var. sinensis HOM05D005797 ORTHO05D006479 4.0e-41 171.0 85 95.3
CSS0028554 Camellia sinensis var. sinensis HOM05D005797 ORTHO05D006479 5.2e-41 170.6 85 95.3
Dinv38477 Davidia involucrata HOM05D005797 ORTHO05D006479 1.2e-26 122.9 85 67.1
Ciclev10023279m.g Citrus clementina HOM05D005797 ORTHO05D006479 2.9e-23 111.7 85 63.5
CiPaw.11G012700 Carya illinoinensis HOM05D005797 ORTHO05D006479 5.4e-22 107.5 85 63.5
vmacro21190 Vaccinium macrocarpon HOM05D005797 ORTHO05D006479 7.8e-21 103.6 87 56.3
GSVIVG01007552001 Vitis vinifera HOM05D005797 ORTHO05D006479 1.7e-20 102.4 85 57.6
ClCG03G003480 Citrullus lanatus HOM05D005797 ORTHO05D006479 3.0e-20 101.7 80 58.8
Lj5A100T65 Lonicera japonica HOM05D005797 ORTHO05D006479 3.0e-20 101.7 85 62.4
Sed0007512 Sechium edule HOM05D005797 ORTHO05D006479 5.6e-19 97.4 81 58.0
MELO3C002331.2 Cucumis melo HOM05D005797 ORTHO05D006479 1.2e-18 96.3 81 56.8
CsaV3_1G009280 Cucumis sativus L. HOM05D005797 ORTHO05D006479 1.2e-18 96.3 81 56.8
Sed0027282 Sechium edule HOM05D005797 ORTHO05D006479 1.1e-17 93.2 81 55.6
Nn3g16589 Nelumbo nucifera HOM05D005797 ORTHO05D006479 3.1e-17 91.7 86 50.0
CANSAT80G2591 Cannabis sativa HOM05D005797 ORTHO05D006479 5.2e-17 90.9 85 55.3
Prupe.5G157600 Prunus persica HOM05D005797 ORTHO05D006479 1.2e-16 89.7 86 57.0
Nn4g22471 Nelumbo nucifera HOM05D005797 ORTHO05D006479 1.5e-16 89.4 85 50.6
QL10p005358 Quercus lobata HOM05D005797 ORTHO05D006479 1.5e-16 89.4 84 54.8
Atru.chr9.1003 Acer truncatum HOM05D005797 ORTHO05D006479 2.6e-16 88.6 82 50.0
Rhsim01G0114700 Rhododendron simsii HOM05D005797 ORTHO05D006479 3.4e-16 88.2 94 50.0
Prupe.5G155300 Prunus persica HOM05D005797 ORTHO05D006479 5.8e-16 87.4 86 54.7
MBI11_g20093_MAGBIO Magnolia biondii HOM05D005797 ORTHO05D006479 7.6e-16 87.0 84 46.4
TAR629G0979 Trochodendron aralioides HOM05D005797 ORTHO05D006479 7.6e-16 87.0 69 60.9
Haze_07281 Corylus avellana HOM05D005797 ORTHO05D006479 9.9e-16 86.7 83 56.6
VMungo1309G1346 Vigna mungo HOM05D005797 ORTHO05D006479 1.3e-15 86.3 75 56.0
Eucgr.K02760 Eucalyptus grandis HOM05D005797 ORTHO05D006479 1.7e-15 85.9 85 48.2
Phvul.009G169300 Phaseolus vulgaris HOM05D005797 ORTHO05D006479 2.9e-15 85.1 75 53.3
AUR62025735 Chenopodium quinoa HOM05D005797 ORTHO05D006479 3.2e-14 81.6 80 50.0
Hund05637 Selenicereus undatus HOM05D005797 ORTHO05D006479 3.2e-14 81.6 81 49.4
Hund05636 Selenicereus undatus HOM05D005797 ORTHO05D006479 7.1e-14 80.5 81 49.4
Aqoxy3G01381 Aquilegia oxysepala HOM05D005797 ORTHO05D006479 9.2e-14 80.1 85 44.7
AUR62001271 Chenopodium quinoa HOM05D005797 ORTHO05D006479 9.2e-14 80.1 74 52.7
Hund18537 Selenicereus undatus HOM05D005797 ORTHO05D006479 1.2e-13 79.7 72 52.8
Hund05629 Selenicereus undatus HOM05D005797 ORTHO05D006479 2.1e-13 79.0 81 48.1
MD06G1157600 Malus domestica HOM05D005797 ORTHO05D006479 2.7e-13 78.6 84 51.2
DCAR_007694 Daucus carota HOM05D005797 ORTHO05D006479 4.6e-13 77.8 68 45.6
Hund05642 Selenicereus undatus HOM05D005797 ORTHO05D006479 7.8e-13 77.0 81 49.4
TAR626G0173 Trochodendron aralioides HOM05D005797 ORTHO05D006479 7.8e-13 77.0 51 64.7
PSO478G0449 Papaver somniferum HOM05D005797 ORTHO05D006479 1.0e-12 76.6 85 42.4
PSO063G1422 Papaver somniferum HOM05D005797 ORTHO05D006479 1.7e-12 75.9 85 42.4
PGR044G0013 Punica granatum HOM05D005797 ORTHO05D006479 3.0e-12 75.1 66 47.0
EL10Ac7g18068 Beta vulgaris HOM05D005797 ORTHO05D006479 5.6e-11 70.9 81 42.0
CAN.G1022.3 Capsicum annuum HOM05D005797 ORTHO05D006479 1.3e-10 69.7 83 43.4
PGSC0003DMG400031024 Solanum tuberosum HOM05D005797 ORTHO05D006479 1.6e-10 69.3 84 39.3
Glyma.04G192400 Glycine max HOM05D005797 ORTHO05D006479 2.1e-10 68.9 78 44.9
FvH4_5g07280 Fragaria vesca HOM05D005797 ORTHO05D006479 3.6e-10 68.2 84 46.4
FAN18G3318 Fragaria x ananassa HOM05D005797 ORTHO05D006479 3.6e-10 68.2 84 46.4
Os02g0598200 Oryza sativa ssp. japonica HOM05D005797 ORTHO05D006479 3.6e-10 68.2 86 41.9
RcHm_v2.0_Chr7g0191351 Rosa chinensis HOM05D005797 ORTHO05D006479 3.6e-10 68.2 83 42.2
Sc10g0010330 Simmondsia chinensis HOM05D005797 ORTHO05D006479 3.6e-10 68.2 81 39.5
FAN08G2881 Fragaria x ananassa HOM05D005797 ORTHO05D006479 4.8e-10 67.8 84 46.4
Nitab4.5_0010931g0020 Nicotiana tabacum HOM05D005797 ORTHO05D006479 6.2e-10 67.4 84 42.9
PGSC0003DMG400031023 Solanum tuberosum HOM05D005797 ORTHO05D006479 6.2e-10 67.4 84 38.1
Cc04_g10490 Coffea canephora HOM05D005797 ORTHO05D006479 8.1e-10 67.0 81 43.2
Psat5g141720 Pisum sativum HOM05D005797 ORTHO05D006479 8.1e-10 67.0 67 44.8
Solyc03g007140.3 Solanum lycopersicum HOM05D005797 ORTHO05D006479 8.1e-10 67.0 84 36.9
Lalb_Chr23g0273471 Lupinus albus HOM05D005797 ORTHO05D006479 1.1e-09 66.6 85 42.4
Nitab4.5_0003282g0040 Nicotiana tabacum HOM05D005797 ORTHO05D006479 1.1e-09 66.6 58 41.4
Sopen03g003130 Solanum pennellii HOM05D005797 ORTHO05D006479 1.4e-09 66.2 84 36.9
Peaxi162Scf00536g00111 Petunia axillaris HOM05D005797 ORTHO05D006479 1.8e-09 65.9 84 34.5
FAN13G0931 Fragaria x ananassa HOM05D005797 ORTHO05D006479 5.3e-09 64.3 83 45.8
Nitab4.5_0002062g0010 Nicotiana tabacum HOM05D005797 ORTHO05D006479 5.3e-09 64.3 84 41.7
arahy.Tifrunner.gnm1.ann1.7Y7E6F Arachis hypogaea HOM05D005797 ORTHO05D006479 9.0e-09 63.5 87 35.6
SalBow1G3539 Salvia bowleyana HOM05D005797 ORTHO05D006479 9.0e-09 63.5 62 41.9
SGA_v2.0_scaffold172G39027 Striga asiatica HOM05D005797 ORTHO05D006479 1.2e-08 63.2 88 38.6
Ca_16094_v3 Cicer arietinum L. HOM05D005797 ORTHO05D006479 1.5e-08 62.8 67 46.3
FAN04G0892 Fragaria x ananassa HOM05D005797 ORTHO05D006479 1.5e-08 62.8 84 45.2
Oeu011581.1 Olea europaea HOM05D005797 ORTHO05D006479 4.4e-08 61.2 82 40.2
CAN.G769.1 Capsicum annuum HOM05D005797 ORTHO05D006479 5.8e-08 60.8 60 38.3
CDE09G0812 Ceratophyllum demersum HOM05D005797 ORTHO05D006479 5.8e-08 60.8 62 46.8
Nitab4.5_0010042g0010 Nicotiana tabacum HOM05D005797 ORTHO05D006479 7.6e-08 60.5 53 41.5
CAN.G1022.5 Capsicum annuum HOM05D005797 ORTHO05D006479 9.9e-08 60.1 71 45.1
CAN.G472.30 Capsicum annuum HOM05D005797 ORTHO05D006479 9.9e-08 60.1 60 38.3
Hund25725 Selenicereus undatus HOM05D005797 ORTHO05D006479 2.9e-07 58.5 60 48.3
Zm00001eb144270 Zea mays HOM05D005797 ORTHO05D006479 3.8e-07 58.2 81 35.8
PGSC0003DMG401015175 Solanum tuberosum HOM05D005797 ORTHO05D006479 8.4e-07 57.0 60 33.3
TPR.G26145 Trifolium pratense HOM05D005797 ORTHO05D006479 1.1e-06 56.6 85 41.2
Oeu011579.3 Olea europaea HOM05D005797 ORTHO05D006479 1.9e-06 55.8 61 44.3
Lsat_1_v5_gn_4_78921 Lactuca sativa HOM05D005797 ORTHO05D006479 5.4e-06 54.3 50 44.0


User provided reference genes

Program Settings