Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048058 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 5.5e-120 434.5 249 100.0
CSS0021062 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D033864 1.3e-113 413.3 252 91.7
CSS0029515 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 3.6e-111 405.2 252 92.1
CSS0045357 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 3.6e-111 405.2 252 92.1
CSS0018040 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 3.3e-104 382.1 254 88.2
CSS0002956 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 2.3e-102 375.9 249 85.9
CSS0007174 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 1.9e-96 356.3 249 81.5
CSS0035692 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 8.9e-86 320.9 249 77.1
CSS0009045 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 5.8e-77 291.6 249 75.5
CSS0010046 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 1.3e-23 114.4 62 93.5
Haze_04629 Corylus avellana HOM05D003827 ORTHO05D004518 2.5e-19 100.1 66 84.8
Cfa006213 Carpinus fangiana HOM05D003827 ORTHO05D004518 1.2e-18 97.8 65 84.6
Actinidia21149 Actinidia chinensis HOM05D003827 ORTHO05D004518 1.0e-17 94.7 91 59.3
vmacro14883 Vaccinium macrocarpon HOM05D003827 ORTHO05D004518 1.8e-17 94.0 65 81.5
QL12p042499 Quercus lobata HOM05D003827 ORTHO05D004518 2.3e-17 93.6 65 81.5
CSS0001059 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 3.0e-17 93.2 65 78.5
Dinv22492 Davidia involucrata HOM05D003827 ORTHO05D004518 5.2e-17 92.4 64 81.2
Thecc.01G269500 Theobroma cacao HOM05D003827 ORTHO05D004518 1.5e-16 90.9 65 78.5
Atru.chr5.1540 Acer truncatum HOM05D003827 ORTHO05D004518 2.6e-16 90.1 62 83.9
Aqoxy5G00378 Aquilegia oxysepala HOM05D003827 ORTHO05D004518 3.3e-16 89.7 65 80.0
COL.COLO4_06099 Corchorus olitorius HOM05D003827 ORTHO05D004518 5.7e-16 89.0 66 80.3
Ciclev10018911m.g Citrus clementina HOM05D003827 ORTHO05D004518 7.4e-16 88.6 65 80.0
Nn1g02509 Nelumbo nucifera HOM05D003827 ORTHO05D004518 7.4e-16 88.6 66 77.3
Lj1A56T63 Lonicera japonica HOM05D003827 ORTHO05D004518 1.3e-15 87.8 67 74.6
Gohir.D11G131801 Gossypium hirsutum HOM05D003827 ORTHO05D004518 2.8e-15 86.7 66 77.3
Duzib133G0640 Durio zibethinus HOM05D003827 ORTHO05D004518 3.7e-15 86.3 67 77.6
PSO210G6408 Papaver somniferum HOM05D003827 ORTHO05D004518 3.7e-15 86.3 69 76.8
PSO832G0360 Papaver somniferum HOM05D003827 ORTHO05D004518 3.7e-15 86.3 69 76.8
vmacro02620 Vaccinium macrocarpon HOM05D003827 ORTHO05D004518 4.8e-15 85.9 66 77.3
DCAR_012508 Daucus carota HOM05D003827 ORTHO05D004518 6.3e-15 85.5 89 59.6
Duzib138G1561 Durio zibethinus HOM05D003827 ORTHO05D004518 6.3e-15 85.5 66 77.3
Gohir.A11G126200 Gossypium hirsutum HOM05D003827 ORTHO05D004518 6.3e-15 85.5 66 75.8
CANSAT25G1147 Cannabis sativa HOM05D003827 ORTHO05D004518 8.2e-15 85.1 70 72.9
Cpa.g.c31397 Carica papaya HOM05D003827 ORTHO05D004518 8.2e-15 85.1 65 76.9
Gohir.D07G213901 Gossypium hirsutum HOM05D003827 ORTHO05D004518 8.2e-15 85.1 65 76.9
Potri.002G046700 Populus trichocarpa HOM05D003827 ORTHO05D004518 8.2e-15 85.1 65 73.8
Sabra05G0165800 Salix brachista HOM05D003827 ORTHO05D004518 8.2e-15 85.1 65 75.4
Gorai.007G140900 Gossypium raimondii HOM05D003827 ORTHO05D004518 1.1e-14 84.7 66 75.8
Solyc07g008670.3 Solanum lycopersicum HOM05D003827 ORTHO05D004518 1.1e-14 84.7 66 71.2
Sopen07g004600 Solanum pennellii HOM05D003827 ORTHO05D004518 1.1e-14 84.7 66 71.2
PGSC0003DMG400022986 Solanum tuberosum HOM05D003827 ORTHO05D004518 1.1e-14 84.7 66 71.2
GSVIVG01003137001 Vitis vinifera HOM05D003827 ORTHO05D004518 1.1e-14 84.7 62 77.4
Peaxi162Scf01038g00148 Petunia axillaris HOM05D003827 ORTHO05D004518 1.4e-14 84.3 66 71.2
TAR362G1025 Trochodendron aralioides HOM05D003827 ORTHO05D004518 1.4e-14 84.3 65 76.9
CsaV3_2G013800 Cucumis sativus L. HOM05D003827 ORTHO05D004518 2.4e-14 83.6 55 78.2
Gohir.A07G207900 Gossypium hirsutum HOM05D003827 ORTHO05D004518 3.1e-14 83.2 65 75.4
Lalb_Chr06g0162731 Lupinus albus HOM05D003827 ORTHO05D004518 3.1e-14 83.2 93 50.5
Nitab4.5_0000617g0200 Nicotiana tabacum HOM05D003827 ORTHO05D004518 3.1e-14 83.2 66 69.7
Nitab4.5_0010556g0020 Nicotiana tabacum HOM05D003827 ORTHO05D004518 3.1e-14 83.2 66 69.7
Actinidia24929 Actinidia chinensis HOM05D003827 ORTHO05D004518 4.1e-14 82.8 95 57.9
CSS0007594 Camellia sinensis var. sinensis HOM05D038181 ORTHO05D033864 4.1e-14 82.8 82 53.7
CSS0013279 Camellia sinensis var. sinensis HOM05D038181 ORTHO05D033864 4.1e-14 82.8 82 53.7
ClCG07G000540 Citrullus lanatus HOM05D003827 ORTHO05D004518 4.1e-14 82.8 55 81.8
Oeu058798.1 Olea europaea HOM05D003827 ORTHO05D004518 4.1e-14 82.8 65 75.4
Sed0018560 Sechium edule HOM05D003827 ORTHO05D004518 4.1e-14 82.8 55 81.8
Sc05g0001120 Simmondsia chinensis HOM05D003827 ORTHO05D004518 4.1e-14 82.8 108 49.1
Dinv34555 Davidia involucrata HOM05D003827 ORTHO05D004518 5.3e-14 82.4 66 78.8
Manes.01G203100 Manihot esculenta HOM05D003827 ORTHO05D004518 5.3e-14 82.4 92 55.4
Rhsim01G0271400 Rhododendron simsii HOM05D003827 ORTHO05D004518 7.0e-14 82.0 96 58.3
Sabra02G0037600 Salix brachista HOM05D003827 ORTHO05D004518 9.1e-14 81.6 65 72.3
Ca_09721_v3 Cicer arietinum L. HOM05D003827 ORTHO05D004518 1.2e-13 81.3 65 66.2
MELO3C014319.2 Cucumis melo HOM05D003827 ORTHO05D004518 1.2e-13 81.3 56 78.6
arahy.Tifrunner.gnm1.ann1.X14VTN Arachis hypogaea HOM05D003827 ORTHO05D004518 1.6e-13 80.9 66 63.6
Gohir.A08G062500 Gossypium hirsutum HOM05D003827 ORTHO05D004518 1.6e-13 80.9 67 70.1
Lj5g0023922 Lotus japonicus HOM05D003827 ORTHO05D004518 1.6e-13 80.9 65 66.2
Cc00_g27210 Coffea canephora HOM05D003827 ORTHO05D004518 2.0e-13 80.5 70 71.4
Duzib211G0278 Durio zibethinus HOM05D003827 ORTHO05D004518 2.0e-13 80.5 54 77.8
Gorai.001G241900 Gossypium raimondii HOM05D003827 ORTHO05D004518 2.0e-13 80.5 65 72.3
HanXRQChr01g0006931 Helianthus annuus HOM05D003827 ORTHO05D004518 2.0e-13 80.5 72 68.1
Potri.005G216300 Populus trichocarpa HOM05D003827 ORTHO05D004518 2.0e-13 80.5 65 70.8
MSTRG.18275 Avicennia marina HOM05D003827 ORTHO05D004518 2.6e-13 80.1 67 64.2
Migut.D00347 Erythranthe guttata HOM05D003827 ORTHO05D004518 2.6e-13 80.1 70 67.1
FvH4_2g22810 Fragaria vesca HOM05D003827 ORTHO05D004518 2.6e-13 80.1 66 74.2
FAN15G1200 Fragaria x ananassa HOM05D003827 ORTHO05D004518 2.6e-13 80.1 66 74.2
FAN20G2722 Fragaria x ananassa HOM05D003827 ORTHO05D004518 2.6e-13 80.1 66 74.2
FAN24G2611 Fragaria x ananassa HOM05D003827 ORTHO05D004518 2.6e-13 80.1 66 74.2
FAN27G1464 Fragaria x ananassa HOM05D003827 ORTHO05D004518 2.6e-13 80.1 66 74.2
MBI04_g36520_MAGBIO Magnolia biondii HOM05D003827 ORTHO05D004518 2.6e-13 80.1 66 69.7
Actinidia19972 Actinidia chinensis HOM05D003827 ORTHO05D004518 3.5e-13 79.7 64 78.1
Eucgr.B01477 Eucalyptus grandis HOM05D003827 ORTHO05D004518 3.5e-13 79.7 104 50.0
Glyma.02G143400 Glycine max HOM05D003827 ORTHO05D004518 3.5e-13 79.7 55 69.1
Gorai.004G075700 Gossypium raimondii HOM05D003827 ORTHO05D004518 3.5e-13 79.7 67 68.7
TPR.G39105 Trifolium pratense HOM05D003827 ORTHO05D004518 3.5e-13 79.7 54 72.2
Glyma.10G031000 Glycine max HOM05D003827 ORTHO05D004518 4.5e-13 79.3 55 69.1
Medtr1g071070 Medicago truncatula HOM05D003827 ORTHO05D004518 4.5e-13 79.3 85 50.6
Hma1.2p1_0210F.1_g089550 Hydrangea macrophylla HOM05D003827 ORTHO05D004518 5.9e-13 79.0 57 77.2
MD11G1277100 Malus domestica HOM05D003827 ORTHO05D004518 5.9e-13 79.0 55 81.8
Hund02868 Selenicereus undatus HOM05D003827 ORTHO05D004518 5.9e-13 79.0 63 76.2
CiPaw.07G086100 Carya illinoinensis HOM05D003827 ORTHO05D004518 7.7e-13 78.6 56 80.4
Gohir.D08G071700 Gossypium hirsutum HOM05D003827 ORTHO05D004518 7.7e-13 78.6 67 68.7
arahy.Tifrunner.gnm1.ann1.S69P4W Arachis hypogaea HOM05D003827 ORTHO05D004518 1.0e-12 78.2 96 46.9
Rhsim13G0030000 Rhododendron simsii HOM05D003827 ORTHO05D004518 1.0e-12 78.2 67 71.6
Lsat_1_v5_gn_5_184780 Lactuca sativa HOM05D003827 ORTHO05D004518 1.3e-12 77.8 73 64.4
Manes.05G082700 Manihot esculenta HOM05D003827 ORTHO05D004518 1.7e-12 77.4 92 56.5
Psat6g058320 Pisum sativum HOM05D003827 ORTHO05D004518 1.7e-12 77.4 65 63.1
RcHm_v2.0_Chr6g0289731 Rosa chinensis HOM05D003827 ORTHO05D004518 1.7e-12 77.4 66 72.7
MSTRG.21519 Avicennia marina HOM05D003827 ORTHO05D004518 2.2e-12 77.0 70 67.1
Prupe.8G233400 Prunus persica HOM05D003827 ORTHO05D004518 2.9e-12 76.6 65 72.3
SalBow4G1883 Salvia bowleyana HOM05D003827 ORTHO05D004518 3.8e-12 76.3 95 52.6
SalBow4G1898 Salvia bowleyana HOM05D003827 ORTHO05D004518 3.8e-12 76.3 95 52.6
SalBow6G3195 Salvia bowleyana HOM05D003827 ORTHO05D004518 3.8e-12 76.3 89 55.1
ATR0665G375 Amborella trichopoda HOM05D003827 ORTHO05D004518 6.5e-12 75.5 54 75.9
AUR62032274 Chenopodium quinoa HOM05D003827 ORTHO05D004518 8.5e-12 75.1 63 61.9
Phvul.007G175800 Phaseolus vulgaris HOM05D003827 ORTHO05D004518 8.5e-12 75.1 70 58.6
Ah.11g050100 Amaranthus hybridus HOM05D003827 ORTHO05D004518 1.1e-11 74.7 59 66.1
arahy.Tifrunner.gnm1.ann1.735JS3 Arachis hypogaea HOM05D003827 ORTHO05D004518 1.1e-11 74.7 69 66.7
arahy.Tifrunner.gnm1.ann1.900HG3 Arachis hypogaea HOM05D003827 ORTHO05D004518 1.1e-11 74.7 69 66.7
Migut.N02178 Erythranthe guttata HOM05D003827 ORTHO05D004518 1.1e-11 74.7 69 59.4
AUR62011961 Chenopodium quinoa HOM05D003827 ORTHO05D004518 1.5e-11 74.3 61 72.1
THA.LOC104817570 Tarenaya hassleriana HOM05D003827 ORTHO05D004518 1.5e-11 74.3 91 54.9
VMungo0720G1763 Vigna mungo HOM05D003827 ORTHO05D004518 2.5e-11 73.6 65 60.0
SGA_v2.0_scaffold81G26054 Striga asiatica HOM05D003827 ORTHO05D004518 3.2e-11 73.2 56 71.4
Lalb_Chr01g0019961 Lupinus albus HOM05D003827 ORTHO05D004518 4.2e-11 72.8 70 62.9
DCAR_005854 Daucus carota HOM05D003827 ORTHO05D004518 5.5e-11 72.4 62 66.1
MD03G1256300 Malus domestica HOM05D003827 ORTHO05D004518 5.5e-11 72.4 54 77.8
Ca_08637_v3 Cicer arietinum L. HOM05D003827 ORTHO05D004518 7.2e-11 72.0 61 68.9
Psat3g061520 Pisum sativum HOM05D003827 ORTHO05D004518 1.2e-10 71.2 57 73.7
TPR.G19092 Trifolium pratense HOM05D003827 ORTHO05D004518 1.2e-10 71.2 57 73.7
EL10Ac5g10483 Beta vulgaris HOM05D003827 ORTHO05D004518 1.6e-10 70.9 61 65.6
MSTRG.12545 Avicennia marina HOM05D003827 ORTHO05D004518 2.7e-10 70.1 64 60.9
PGR119G2143 Punica granatum HOM05D003827 ORTHO05D004518 3.6e-10 69.7 83 54.2
CDE07G1346 Ceratophyllum demersum HOM05D003827 ORTHO05D004518 6.1e-10 68.9 68 60.3
Sp5g00120 Schrenkiella parvula HOM05D003827 ORTHO05D004518 6.1e-10 68.9 57 64.9
BcaC07g42691 Brassica carinata HOM05D003827 ORTHO05D004518 1.0e-09 68.2 54 64.8
CDE06G2016 Ceratophyllum demersum HOM05D003827 ORTHO05D004518 1.0e-09 68.2 66 62.1
Medtr7g095890 Medicago truncatula HOM05D003827 ORTHO05D004518 1.0e-09 68.2 56 69.6
AL5G46290 Arabidopsis lyrata HOM05D003827 ORTHO05D004518 1.4e-09 67.8 57 64.9
CARHR291540 Cardamine hirsuta HOM05D003827 ORTHO05D004518 1.8e-09 67.4 56 66.1
HanXRQChr06g0177881 Helianthus annuus HOM05D003827 ORTHO05D004518 1.8e-09 67.4 73 58.9
Ah.02g111340 Amaranthus hybridus HOM05D003827 ORTHO05D004518 2.3e-09 67.0 63 60.3
ECA248G3364 Erigeron canadensis HOM05D003827 ORTHO05D004518 2.3e-09 67.0 71 59.2
Thhalv10005863m.g Eutrema salsugineum HOM05D003827 ORTHO05D004518 5.2e-09 65.9 57 63.2
AT3G63430 Arabidopsis thaliana HOM05D003827 ORTHO05D004518 8.8e-09 65.1 56 62.5
TAR628G1031 Trochodendron aralioides HOM05D000401 ORTHO05D000252 1.2e-08 64.7 207 41.5
TAR628G1738 Trochodendron aralioides HOM05D000401 ORTHO05D000252 1.2e-08 64.7 207 41.5
C08p38040 Brassica napus HOM05D003827 ORTHO05D004518 2.6e-08 63.5 57 61.4
MSTRG.17468 Avicennia marina HOM05D003827 ORTHO05D004518 3.3e-08 63.2 67 58.2
BolC8t51378H Brassica oleracea HOM05D003827 ORTHO05D004518 4.4e-08 62.8 59 59.3
BraA09t40917Z Brassica rapa HOM05D003827 ORTHO05D004518 4.4e-08 62.8 89 44.9
A09p55100 Brassica napus HOM05D003827 ORTHO05D004518 5.7e-08 62.4 59 59.3
Lj1g0025199 Lotus japonicus HOM05D003827 ORTHO05D004518 5.7e-08 62.4 67 58.2
CiPaw.01G035600 Carya illinoinensis HOM05D000401 ORTHO05D000252 9.7e-08 61.6 131 35.9
Dinv39966 Davidia involucrata HOM05D038181 ORTHO05D000252 1.7e-07 60.8 125 39.2
Gohir.A05G392150 Gossypium hirsutum HOM05D003827 ORTHO05D004518 1.7e-07 60.8 47 74.5
Gohir.D04G024950 Gossypium hirsutum HOM05D003827 ORTHO05D004518 1.7e-07 60.8 47 76.6
Gorai.012G027500 Gossypium raimondii HOM05D003827 ORTHO05D004518 1.7e-07 60.8 47 76.6
Aa31LG10G17280 Aethionema arabicum HOM05D003827 ORTHO05D004518 2.8e-07 60.1 64 56.2
DCAR_002692 Daucus carota HOM05D003827 ORTHO05D004518 2.8e-07 60.1 111 44.1
BcaC07g40810 Brassica carinata HOM05D003827 ORTHO05D004518 4.8e-07 59.3 61 55.7
Lsat_1_v5_gn_9_7940 Lactuca sativa HOM05D003827 ORTHO05D004518 4.8e-07 59.3 74 54.1
Lj2A449T51 Lonicera japonica HOM05D000401 ORTHO05D000252 6.3e-07 58.9 136 36.0
Haze_15113 Corylus avellana HOM05D000401 ORTHO05D000252 1.1e-06 58.2 211 39.3
Aqoxy2G03489 Aquilegia oxysepala HOM05D003827 ORTHO05D004518 1.4e-06 57.8 42 76.2
HanXRQChr15g0466901 Helianthus annuus HOM05D003827 ORTHO05D004518 1.8e-06 57.4 75 50.7
Oeu002272.1 Olea europaea HOM05D003827 ORTHO05D004518 3.1e-06 56.6 64 57.8
HPP92_020343 Vanilla planifolia HOM05D003827 ORTHO05D004518 4.1e-06 56.2 58 60.3
ECA247G1386 Erigeron canadensis HOM05D003827 ORTHO05D004518 5.3e-06 55.8 76 50.0


User provided reference genes

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