Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048046 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 6.6e-131 470.7 237 100.0
CSS0048448 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 3.4e-127 458.4 253 93.3
CSS0026131 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 2.4e-104 382.5 245 77.6
CSS0033533 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 5.3e-104 381.3 245 77.1
vmacro02852 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 6.0e-100 367.9 270 72.2
Hma1.2p1_1631F.1_g294630 Hydrangea macrophylla HOM05D004791 ORTHO05D005637 1.9e-98 362.8 254 72.0
Dinv28770 Davidia involucrata HOM05D004791 ORTHO05D005637 3.3e-98 362.1 209 84.7
vmacro14664 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 3.3e-98 362.1 271 70.1
Lsat_1_v5_gn_5_176000 Lactuca sativa HOM05D004791 ORTHO05D005637 9.7e-98 360.5 248 69.8
SalBow6G3468 Salvia bowleyana HOM05D004791 ORTHO05D005637 1.0e-94 350.5 252 71.8
Manes.05G196500 Manihot esculenta HOM05D004791 ORTHO05D005637 1.4e-93 346.7 258 68.6
Solyc06g082810.3 Solanum lycopersicum HOM05D004791 ORTHO05D005637 1.9e-93 346.3 240 73.3
GSVIVG01037421001 Vitis vinifera HOM05D004791 ORTHO05D005637 3.2e-93 345.5 246 72.0
PGSC0003DMG400027664 Solanum tuberosum HOM05D004791 ORTHO05D005637 5.5e-93 344.7 240 72.9
PGR102G1910 Punica granatum HOM05D004791 ORTHO05D005637 9.4e-93 344.0 259 68.7
DCAR_018598 Daucus carota HOM05D004791 ORTHO05D005637 1.2e-92 343.6 253 68.0
SGA_v2.0_scaffold8G04482 Striga asiatica HOM05D004791 ORTHO05D005637 1.2e-92 343.6 243 71.6
RcHm_v2.0_Chr5g0050091 Rosa chinensis HOM05D004791 ORTHO05D005637 2.1e-92 342.8 232 72.0
Sopen06g034170 Solanum pennellii HOM05D004791 ORTHO05D005637 4.6e-92 341.7 240 72.5
Peaxi162Scf00390g00128 Petunia axillaris HOM05D004791 ORTHO05D005637 6.1e-92 341.3 248 69.0
MD02G1268200 Malus domestica HOM05D004791 ORTHO05D005637 1.4e-91 340.1 250 69.6
TAR633G0334 Trochodendron aralioides HOM05D004791 ORTHO05D005637 2.3e-91 339.3 288 64.6
SGA_v2.0_scaffold158G37484 Striga asiatica HOM05D004791 ORTHO05D005637 3.0e-91 339.0 240 70.4
Aqoxy2G04139 Aquilegia oxysepala HOM05D004791 ORTHO05D005637 3.9e-91 338.6 248 67.7
Nitab4.5_0008751g0050 Nicotiana tabacum HOM05D004791 ORTHO05D005637 3.9e-91 338.6 251 70.9
CAN.G874.52 Capsicum annuum HOM05D004791 ORTHO05D005637 5.1e-91 338.2 240 71.7
Eucgr.B03774 Eucalyptus grandis HOM05D004791 ORTHO05D005637 6.7e-91 337.8 247 68.8
Migut.D00780 Erythranthe guttata HOM05D004791 ORTHO05D005637 8.8e-91 337.4 252 68.3
Glyma.14G040400 Glycine max HOM05D004791 ORTHO05D005637 8.8e-91 337.4 242 70.7
Nitab4.5_0000539g0030 Nicotiana tabacum HOM05D004791 ORTHO05D005637 8.8e-91 337.4 248 70.2
Potri.001G222300 Populus trichocarpa HOM05D004791 ORTHO05D005637 2.0e-90 336.3 249 67.9
FvH4_3g27591 Fragaria vesca HOM05D004791 ORTHO05D005637 3.3e-90 335.5 235 70.6
ClCG02G024120 Citrullus lanatus HOM05D004791 ORTHO05D005637 4.3e-90 335.1 254 66.9
Gorai.004G001600 Gossypium raimondii HOM05D004791 ORTHO05D005637 4.3e-90 335.1 237 70.0
Gohir.A08G000072 Gossypium hirsutum HOM05D004791 ORTHO05D005637 5.7e-90 334.7 237 70.0
Ca_06167_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 7.4e-90 334.3 239 68.6
Ca_06184_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 7.4e-90 334.3 239 68.6
Gohir.D08G008400 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.3e-89 333.6 237 69.6
Lalb_Chr04g0249541 Lupinus albus HOM05D004791 ORTHO05D005637 1.7e-89 333.2 243 68.3
Gohir.D13G235800 Gossypium hirsutum HOM05D004791 ORTHO05D005637 2.8e-89 332.4 239 68.6
Gorai.013G266500 Gossypium raimondii HOM05D004791 ORTHO05D005637 6.3e-89 331.3 251 66.5
HanXRQChr01g0013701 Helianthus annuus HOM05D004791 ORTHO05D005637 1.1e-88 330.5 238 67.6
ECA248G0040 Erigeron canadensis HOM05D004791 ORTHO05D005637 1.8e-88 329.7 232 69.8
Cfa010279 Carpinus fangiana HOM05D004791 ORTHO05D005637 3.1e-88 328.9 257 67.3
Nitab4.5_0001348g0240 Nicotiana tabacum HOM05D004791 ORTHO05D005637 3.1e-88 328.9 251 69.3
Sed0001715 Sechium edule HOM05D004791 ORTHO05D005637 3.1e-88 328.9 248 67.3
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 3.1e-88 328.9 237 69.2
FAN16G2039 Fragaria x ananassa HOM05D004791 ORTHO05D005637 5.3e-88 328.2 235 69.4
CsaV3_4G023210 Cucumis sativus L. HOM05D004791 ORTHO05D005637 6.9e-88 327.8 251 66.5
Glyma.02G275700 Glycine max HOM05D004791 ORTHO05D005637 1.2e-87 327.0 243 69.1
Lalb_Chr04g0249551 Lupinus albus HOM05D004791 ORTHO05D005637 1.2e-87 327.0 243 67.1
MD07G1051600 Malus domestica HOM05D004791 ORTHO05D005637 1.2e-87 327.0 241 67.6
Hund25111 Selenicereus undatus HOM05D004791 ORTHO05D005637 1.2e-87 327.0 243 67.9
Atru.chr3.2946 Acer truncatum HOM05D004791 ORTHO05D005637 2.0e-87 326.2 238 67.6
Gohir.A13G230300 Gossypium hirsutum HOM05D004791 ORTHO05D005637 3.4e-87 325.5 250 66.4
LjContig00564g0026958 Lotus japonicus HOM05D004791 ORTHO05D005637 3.4e-87 325.5 244 68.0
VMungo0647G0403 Vigna mungo HOM05D004791 ORTHO05D005637 5.9e-87 324.7 242 68.2
Lj2A1108T30 Lonicera japonica HOM05D004791 ORTHO05D005637 7.7e-87 324.3 345 53.9
Sc15g0007330 Simmondsia chinensis HOM05D004791 ORTHO05D005637 7.7e-87 324.3 246 65.4
arahy.Tifrunner.gnm1.ann1.7GTL8A Arachis hypogaea HOM05D004791 ORTHO05D005637 1.3e-86 323.6 205 76.1
arahy.Tifrunner.gnm1.ann1.FGXA9Q Arachis hypogaea HOM05D004791 ORTHO05D005637 1.7e-86 323.2 205 76.1
Sopen09g012370 Solanum pennellii HOM05D004791 ORTHO05D005637 2.2e-86 322.8 251 67.3
Thecc.09G339600 Theobroma cacao HOM05D004791 ORTHO05D005637 2.2e-86 322.8 258 62.8
TWI79G1652 Tripterygium wilfordii HOM05D004791 ORTHO05D005637 2.2e-86 322.8 204 77.0
CiPaw.13G121900 Carya illinoinensis HOM05D004791 ORTHO05D005637 5.0e-86 321.6 201 81.6
Migut.N00694 Erythranthe guttata HOM05D004791 ORTHO05D005637 8.5e-86 320.9 232 68.1
MELO3C014695.2 Cucumis melo HOM05D004791 ORTHO05D005637 1.1e-85 320.5 248 66.1
Nitab4.5_0004383g0040 Nicotiana tabacum HOM05D004791 ORTHO05D005637 3.2e-85 318.9 185 80.5
AUR62002934 Chenopodium quinoa HOM05D004791 ORTHO05D005637 4.2e-85 318.5 245 64.5
AUR62007743 Chenopodium quinoa HOM05D004791 ORTHO05D005637 5.5e-85 318.2 246 63.8
Nitab4.5_0000105g0450 Nicotiana tabacum HOM05D004791 ORTHO05D005637 7.2e-85 317.8 269 66.2
THA.LOC104800478 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 7.2e-85 317.8 244 67.2
PSO732G0764 Papaver somniferum HOM05D004791 ORTHO05D005637 2.1e-84 316.2 248 64.9
Aa31LG5G8380 Aethionema arabicum HOM05D004791 ORTHO05D005637 4.7e-84 315.1 231 67.5
PSO675G0111 Papaver somniferum HOM05D004791 ORTHO05D005637 4.7e-84 315.1 250 63.6
Ciclev10016367m.g Citrus clementina HOM05D004791 ORTHO05D005637 7.9e-84 314.3 185 78.9
BraA09t35872Z Brassica rapa HOM05D004791 ORTHO05D005637 1.4e-83 313.5 231 66.2
AL4G20260 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 3.9e-83 312.0 233 66.5
A09p02230 Brassica napus HOM05D004791 ORTHO05D005637 3.9e-83 312.0 231 65.8
Carub.0004s0745 Capsella rubella HOM05D004791 ORTHO05D005637 3.9e-83 312.0 236 65.3
C09p02320 Brassica napus HOM05D004791 ORTHO05D005637 6.7e-83 311.2 234 64.5
CDE08G0165 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 1.5e-82 310.1 251 62.9
Lsat_1_v5_gn_9_15660 Lactuca sativa HOM05D004791 ORTHO05D005637 3.3e-82 308.9 244 65.6
BcaB01g01998 Brassica carinata HOM05D004791 ORTHO05D005637 2.8e-81 305.8 230 64.8
BcaC04g24019 Brassica carinata HOM05D004791 ORTHO05D005637 3.7e-81 305.4 234 64.1
Sp4g08380 Schrenkiella parvula HOM05D004791 ORTHO05D005637 3.7e-81 305.4 234 65.8
THA.LOC104816959 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 3.7e-81 305.4 242 64.9
Medtr5g088337 Medicago truncatula HOM05D004791 ORTHO05D005637 6.3e-81 304.7 244 63.5
Thhalv10002092m.g Eutrema salsugineum HOM05D004791 ORTHO05D005637 1.4e-80 303.5 232 64.2
CARHR119150 Cardamine hirsuta HOM05D004791 ORTHO05D005637 1.8e-80 303.1 231 64.5
AT2G26970 Arabidopsis thaliana HOM05D004791 ORTHO05D005637 3.1e-80 302.4 233 64.4
BolC9t53160H Brassica oleracea HOM05D004791 ORTHO05D005637 1.2e-79 300.4 236 63.6
EL10Ac6g14521 Beta vulgaris HOM05D004791 ORTHO05D005637 1.0e-78 297.4 241 62.2
CDE09G0384 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 2.2e-78 296.2 251 60.2
Cc01_g15680 Coffea canephora HOM05D004791 ORTHO05D005637 5.0e-78 295.0 172 83.1
Os02g0465500 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 1.9e-77 293.1 250 61.2
Rhsim11G0123600 Rhododendron simsii HOM05D004791 ORTHO05D005637 3.2e-77 292.4 247 64.0
Zm00001eb240820 Zea mays HOM05D004791 ORTHO05D005637 1.6e-76 290.0 248 59.7
Prupe.2G051000 Prunus persica HOM05D004791 ORTHO05D005637 6.7e-75 284.6 206 69.4
SEGI_38815 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 1.1e-72 277.3 247 55.5
Prupe.2G053500 Prunus persica HOM05D004791 ORTHO05D005637 1.3e-70 270.4 215 65.1
ECA247G3547 Erigeron canadensis HOM05D004791 ORTHO05D005637 6.5e-70 268.1 205 65.9
Phvul.008G205900 Phaseolus vulgaris HOM05D004791 ORTHO05D005637 1.4e-67 260.4 202 66.3
COL.COLO4_18343 Corchorus olitorius HOM05D004791 ORTHO05D005637 1.8e-67 260.0 243 57.6
ATR0661G342 Amborella trichopoda HOM05D004791 ORTHO05D005637 3.0e-67 259.2 226 58.8
HanXRQChr08g0230971 Helianthus annuus HOM05D004791 ORTHO05D005637 5.2e-67 258.5 184 69.6
HanXRQChr08g0230941 Helianthus annuus HOM05D004791 ORTHO05D005637 1.2e-66 257.3 184 68.5
SEGI_08759 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 2.0e-66 256.5 198 61.1
Duzib168G2260 Durio zibethinus HOM05D004791 ORTHO05D005637 5.7e-66 255.0 168 75.0
HPP92_004836 Vanilla planifolia HOM05D004791 ORTHO05D005637 3.5e-63 245.7 191 66.0
Peaxi162Scf00293g00320 Petunia axillaris HOM05D004791 ORTHO05D005637 1.7e-62 243.4 146 79.5
Mapoly0089s0044 Marchantia polymorpha HOM05D004791 ORTHO05D005637 3.8e-62 242.3 238 52.9
SMO361G0388 Selaginella moellendorffii HOM05D004791 ORTHO05D005637 3.2e-61 239.2 189 61.9
Pp3c15_14440 Physcomitrium patens HOM05D004791 ORTHO05D005637 3.6e-60 235.7 245 51.0
Rhsim13G0056300 Rhododendron simsii HOM05D004791 ORTHO05D005637 3.4e-58 229.2 427 39.8
HPP92_004833 Vanilla planifolia HOM05D004791 ORTHO05D005637 4.4e-58 228.8 162 70.4
MBI06_g07515_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 2.4e-56 223.0 184 62.5
Pp3c9_12520 Physcomitrium patens HOM05D004791 ORTHO05D005637 4.1e-56 222.2 186 57.5
CANSAT54G2396 Cannabis sativa HOM05D004791 ORTHO05D005637 1.7e-54 216.9 187 60.4
QL01p007413 Quercus lobata HOM05D004791 ORTHO05D005637 2.3e-54 216.5 215 57.2
Dinv00703 Davidia involucrata HOM05D004791 ORTHO05D005637 5.0e-54 215.3 165 67.9
Psat2g021120 Pisum sativum HOM05D004791 ORTHO05D005637 6.6e-54 214.9 169 63.3
Duzib170G0202 Durio zibethinus HOM05D004791 ORTHO05D005637 1.1e-53 214.2 177 61.0
Dinv18272 Davidia involucrata HOM05D004791 ORTHO05D005637 1.5e-53 213.8 154 71.4
Cre10.g425800 Chlamydomonas reinhardtii HOM05D004791 ORTHO05D005637 4.3e-45 185.7 223 41.3
PRCOL_00004118 Prasinoderma coloniale HOM05D004791 ORTHO05D005637 1.8e-43 180.3 181 50.3
Lalb_Chr04g0249561 Lupinus albus HOM05D004791 ORTHO05D005637 5.2e-43 178.7 117 74.4
Solyc09g018760.2 Solanum lycopersicum HOM05D004791 ORTHO05D005637 8.9e-43 177.9 149 63.1
Nn7g38012 Nelumbo nucifera HOM05D004791 ORTHO05D005637 5.8e-42 175.3 157 61.1
TPR.G27619 Trifolium pratense HOM05D004791 ORTHO05D005637 7.5e-42 174.9 148 61.5
Haze_23696 Corylus avellana HOM05D004791 ORTHO05D005637 9.2e-40 167.9 188 50.5
Solyc09g018780.4 Solanum lycopersicum HOM05D004791 ORTHO05D005637 1.5e-37 160.6 101 80.2
FAN11G2354 Fragaria x ananassa HOM05D004791 ORTHO05D005637 5.6e-37 158.7 166 53.6
TPR.G11322 Trifolium pratense HOM05D004791 ORTHO05D005637 5.8e-34 148.7 101 70.3
MSTRG.18521 Avicennia marina HOM05D004791 ORTHO05D005637 7.5e-34 148.3 124 62.9
Cfa021416 Carpinus fangiana HOM05D004791 ORTHO05D005637 3.7e-33 146.0 178 44.9
BolC9t53165H Brassica oleracea HOM05D004791 ORTHO05D005637 5.4e-32 142.1 126 56.3
C09p02340 Brassica napus HOM05D004791 ORTHO05D005637 3.6e-28 129.4 113 58.4
BcaC04g24021 Brassica carinata HOM05D004791 ORTHO05D005637 1.8e-27 127.1 113 56.6
C03p32150 Brassica napus HOM05D004791 ORTHO05D005637 2.2e-25 120.2 128 50.0
BolC3t15557H Brassica oleracea HOM05D004791 ORTHO05D005637 2.2e-25 120.2 128 50.0
MBI06_g07516_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 1.9e-24 117.1 76 76.3
HanXRQChr08g0230891 Helianthus annuus HOM05D004791 ORTHO05D005637 7.1e-24 115.2 183 37.7
HanXRQChr08g0230961 Helianthus annuus HOM05D004791 ORTHO05D005637 5.1e-22 109.0 67 71.6
Peaxi162Scf01280g00024 Petunia axillaris HOM05D004791 ORTHO05D005637 9.6e-21 104.8 120 50.0
DCAR_012715 Daucus carota HOM05D004791 ORTHO05D005637 1.8e-19 100.5 68 73.5
HanXRQChr08g0230951 Helianthus annuus HOM05D004791 ORTHO05D005637 4.4e-18 95.9 68 67.6
AL1G12420 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 7.6e-18 95.1 64 67.2
Os04g0303950 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 5.1e-14 82.4 107 46.7
DCAR_012716 Daucus carota HOM05D004791 ORTHO05D005637 6.6e-14 82.0 52 76.9
Gohir.D04G099150 Gossypium hirsutum HOM05D004791 ORTHO05D005637 8.7e-14 81.6 89 51.7
Gorai.013G056800 Gossypium raimondii HOM05D004791 ORTHO05D005637 2.1e-12 77.0 85 48.2
PGSC0003DMG400043354 Solanum tuberosum HOM05D004791 ORTHO05D005637 6.0e-07 58.9 78 48.7
Cpa.g.sc34.213 Carica papaya HOM05D004791 ORTHO05D005637 1.3e-06 57.8 34 79.4
Nitab4.5_0005144g0040 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.7e-06 57.4 35 74.3
Oeu020446.1 Olea europaea HOM05D004791 ORTHO05D005637 3.9e-06 56.2 84 41.7


User provided reference genes

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