Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048020 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.4e-146 523.1 305 100.0
CSS0037390 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.6e-145 519.6 305 99.3
CSS0040857 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.6e-100 370.2 254 87.8
vmacro11972 Vaccinium macrocarpon HOM05D004700 ORTHO05D005576 1.0e-99 367.5 256 85.9
Lj1A824T63 Lonicera japonica HOM05D004700 ORTHO05D005576 2.5e-98 362.8 257 81.3
Actinidia03618 Actinidia chinensis HOM05D004700 ORTHO05D005576 2.1e-97 359.8 257 86.0
Hma1.2p1_0325F.1_g125830 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 6.2e-97 358.2 261 85.4
Haze_09248 Corylus avellana HOM05D004700 ORTHO05D005576 1.1e-96 357.5 255 85.1
Actinidia12604 Actinidia chinensis HOM05D004700 ORTHO05D005576 8.9e-96 354.4 270 77.4
Atru.chr2.1968 Acer truncatum HOM05D004700 ORTHO05D005576 2.0e-95 353.2 256 86.3
Atru.chr2.1937 Acer truncatum HOM05D004700 ORTHO05D005576 5.8e-95 351.7 256 85.9
QL08p024163 Quercus lobata HOM05D004700 ORTHO05D005576 6.4e-94 348.2 267 77.5
Manes.15G098600 Manihot esculenta HOM05D004700 ORTHO05D005576 4.1e-93 345.5 256 77.3
CiPaw.12G110800 Carya illinoinensis HOM05D004700 ORTHO05D005576 5.4e-93 345.1 255 85.1
Prupe.4G156500 Prunus persica HOM05D004700 ORTHO05D005576 7.1e-93 344.7 256 79.7
Ciclev10016084m.g Citrus clementina HOM05D004700 ORTHO05D005576 1.2e-92 344.0 255 82.0
Solyc08g015770.4 Solanum lycopersicum HOM05D004700 ORTHO05D005576 1.2e-92 344.0 257 82.1
GSVIVG01014096001 Vitis vinifera HOM05D004700 ORTHO05D005576 6.0e-92 341.7 256 82.4
Potri.011G104500 Populus trichocarpa HOM05D004700 ORTHO05D005576 7.8e-92 341.3 256 80.5
CAN.G68.2 Capsicum annuum HOM05D004700 ORTHO05D005576 5.1e-91 338.6 257 80.5
Sabra11G0081100 Salix brachista HOM05D004700 ORTHO05D005576 5.1e-91 338.6 256 80.9
Sabra11G0076400 Salix brachista HOM05D004700 ORTHO05D005576 8.6e-91 337.8 256 80.5
Nn6g34422 Nelumbo nucifera HOM05D004700 ORTHO05D005576 1.9e-90 336.7 255 75.7
TAR624G0400 Trochodendron aralioides HOM05D004700 ORTHO05D005576 1.9e-90 336.7 255 82.0
DCAR_013348 Daucus carota HOM05D004700 ORTHO05D005576 7.3e-90 334.7 260 81.2
Rhsim06G0211800 Rhododendron simsii HOM05D004700 ORTHO05D005576 7.3e-90 334.7 260 84.6
PGR031G0266 Punica granatum HOM05D004700 ORTHO05D005576 1.2e-89 334.0 255 83.5
RhsimUnG0206700 Rhododendron simsii HOM05D004700 ORTHO05D005576 1.2e-89 334.0 279 74.2
Hma1.2p1_0050F.1_g028780 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 2.8e-89 332.8 255 76.5
Eucgr.F03234 Eucalyptus grandis HOM05D004700 ORTHO05D005576 3.6e-89 332.4 255 80.4
Cc05_g10710 Coffea canephora HOM05D004700 ORTHO05D005576 6.2e-89 331.6 259 80.3
Glyma.15G209600 Glycine max HOM05D004700 ORTHO05D005576 3.1e-88 329.3 256 74.2
Cfa019516 Carpinus fangiana HOM05D004700 ORTHO05D005576 1.2e-87 327.4 241 84.2
CiPaw.11G155900 Carya illinoinensis HOM05D004700 ORTHO05D005576 3.4e-87 325.9 255 80.0
Lalb_Chr19g0133711 Lupinus albus HOM05D004700 ORTHO05D005576 3.4e-87 325.9 257 67.7
EL10Ac4g08417 Beta vulgaris HOM05D004700 ORTHO05D005576 4.4e-87 325.5 256 78.5
Phvul.011G168700 Phaseolus vulgaris HOM05D004700 ORTHO05D005576 4.4e-87 325.5 256 66.8
TWI38G0400 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 5.8e-87 325.1 258 75.6
Glyma.09G099300 Glycine max HOM05D004700 ORTHO05D005576 1.7e-86 323.6 256 80.1
VMungo1127G0687 Vigna mungo HOM05D004700 ORTHO05D005576 6.4e-86 321.6 257 66.1
HanXRQChr15g0492381 Helianthus annuus HOM05D004700 ORTHO05D005576 1.1e-85 320.9 265 77.0
Oeu050672.1 Olea europaea HOM05D004700 ORTHO05D005576 1.4e-85 320.5 258 74.0
Nitab4.5_0012258g0020 Nicotiana tabacum HOM05D004700 ORTHO05D005576 1.9e-85 320.1 256 79.7
MELO3C016116.2 Cucumis melo HOM05D004700 ORTHO05D005576 4.1e-85 318.9 256 74.6
Nitab4.5_0000348g0050 Nicotiana tabacum HOM05D004700 ORTHO05D005576 7.1e-85 318.2 257 79.4
Potri.001G383900 Populus trichocarpa HOM05D004700 ORTHO05D005576 7.1e-85 318.2 262 79.8
MBI06_g08516_MAGBIO Magnolia biondii HOM05D004700 ORTHO05D005576 2.1e-84 316.6 263 76.0
Nitab4.5_0000092g0360 Nicotiana tabacum HOM05D004700 ORTHO05D005576 3.5e-84 315.8 257 63.8
THA.LOC104822577 Tarenaya hassleriana HOM05D004700 ORTHO05D005576 3.5e-84 315.8 258 65.9
Duzib213G0278 Durio zibethinus HOM05D004700 ORTHO05D005576 4.6e-84 315.5 256 81.2
Sopen08g005940 Solanum pennellii HOM05D004700 ORTHO05D005576 4.6e-84 315.5 257 78.6
Hund08843 Selenicereus undatus HOM05D004700 ORTHO05D005576 1.0e-83 314.3 258 78.7
Actinidia39420 Actinidia chinensis HOM05D004700 ORTHO05D005576 3.0e-83 312.8 259 71.4
Thecc.07G132900 Theobroma cacao HOM05D004700 ORTHO05D005576 3.9e-83 312.4 256 78.1
TPR.G16482 Trifolium pratense HOM05D004700 ORTHO05D005576 3.9e-83 312.4 256 64.5
Manes.03G079300 Manihot esculenta HOM05D004700 ORTHO05D005576 1.9e-82 310.1 256 78.5
Medtr8g054400 Medicago truncatula HOM05D004700 ORTHO05D005576 4.3e-82 308.9 248 66.1
Sc03g0010710 Simmondsia chinensis HOM05D004700 ORTHO05D005576 5.6e-82 308.5 256 76.2
Migut.H02024 Erythranthe guttata HOM05D004700 ORTHO05D005576 4.7e-81 305.4 260 66.2
Sed0011117 Sechium edule HOM05D004700 ORTHO05D005576 1.4e-80 303.9 255 74.1
Sabra16G0252900 Salix brachista HOM05D004700 ORTHO05D005576 1.8e-80 303.5 262 77.1
Gorai.007G331800 Gossypium raimondii HOM05D004700 ORTHO05D005576 5.2e-80 302.0 258 61.6
ClCG07G010130 Citrullus lanatus HOM05D004700 ORTHO05D005576 5.8e-79 298.5 271 59.8
Dinv26707 Davidia involucrata HOM05D004700 ORTHO05D005576 5.8e-79 298.5 255 78.0
AL1G62040 Arabidopsis lyrata HOM05D004700 ORTHO05D005576 9.9e-79 297.7 259 65.6
Thhalv10011691m.g Eutrema salsugineum HOM05D004700 ORTHO05D005576 9.9e-79 297.7 259 65.6
Lj3g0009226 Lotus japonicus HOM05D004700 ORTHO05D005576 9.9e-79 297.7 256 66.4
TWI38G0408 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 1.3e-78 297.4 256 64.1
MD03G1247600 Malus domestica HOM05D004700 ORTHO05D005576 2.2e-78 296.6 257 72.0
PGSC0003DMG400013718 Solanum tuberosum HOM05D004700 ORTHO05D005576 2.9e-78 296.2 232 81.5
PSO675G6346 Papaver somniferum HOM05D004700 ORTHO05D005576 6.4e-78 295.0 257 73.2
Sp1g40020 Schrenkiella parvula HOM05D004700 ORTHO05D005576 6.4e-78 295.0 259 65.3
AT1G53490 Arabidopsis thaliana HOM05D004700 ORTHO05D005576 1.9e-77 293.5 259 65.3
CANSAT56G3173 Cannabis sativa HOM05D004700 ORTHO05D005576 2.4e-77 293.1 260 59.2
Carub.0001s4267 Capsella rubella HOM05D004700 ORTHO05D005576 4.2e-77 292.4 259 64.5
CsaV3_4G008200 Cucumis sativus L. HOM05D004700 ORTHO05D005576 4.2e-77 292.4 256 72.7
COL.COLO4_17473 Corchorus olitorius HOM05D004700 ORTHO05D005576 7.1e-77 291.6 232 65.1
Aa31LG10G1720 Aethionema arabicum HOM05D004700 ORTHO05D005576 1.6e-76 290.4 259 67.2
SGA_v2.0_scaffold181G39765 Striga asiatica HOM05D004700 ORTHO05D005576 2.1e-76 290.0 262 72.5
ECA236G3615 Erigeron canadensis HOM05D004700 ORTHO05D005576 2.3e-75 286.6 290 56.2
BolC3t21472H Brassica oleracea HOM05D004700 ORTHO05D005576 5.1e-75 285.4 260 61.2
C03p91550 Brassica napus HOM05D004700 ORTHO05D005576 6.6e-75 285.0 260 61.5
BcaC01g01394 Brassica carinata HOM05D004700 ORTHO05D005576 8.7e-75 284.6 260 61.2
DCAR_021040 Daucus carota HOM05D004700 ORTHO05D005576 4.3e-74 282.3 239 79.1
AUR62039578 Chenopodium quinoa HOM05D004700 ORTHO05D005576 6.2e-73 278.5 231 77.9
PSO541G3766 Papaver somniferum HOM05D004700 ORTHO05D005576 8.1e-73 278.1 255 67.5
AUR62019650 Chenopodium quinoa HOM05D004700 ORTHO05D005576 3.1e-72 276.2 231 77.1
ATR0602G050 Amborella trichopoda HOM05D004700 ORTHO05D005576 4.0e-72 275.8 269 67.7
BcaC08g43535 Brassica carinata HOM05D004700 ORTHO05D005576 4.0e-72 275.8 270 66.7
Gohir.D11G302900 Gossypium hirsutum HOM05D004700 ORTHO05D005576 5.3e-72 275.4 258 58.9
Peaxi162Scf00111g01325 Petunia axillaris HOM05D004700 ORTHO05D005576 6.9e-72 275.0 249 60.6
Cpa.g.sc77.62 Carica papaya HOM05D004700 ORTHO05D005576 1.5e-71 273.9 232 63.8
Os02g0232100 Oryza sativa ssp. japonica HOM05D004700 ORTHO05D005576 2.0e-71 273.5 256 61.3
CARHR043720 Cardamine hirsuta HOM05D004700 ORTHO05D005576 3.4e-71 272.7 261 62.1
Gohir.A11G289500 Gossypium hirsutum HOM05D004700 ORTHO05D005576 9.9e-71 271.2 258 58.1
BcaB02g10917 Brassica carinata HOM05D004700 ORTHO05D005576 6.4e-70 268.5 262 67.6
A05p18220 Brassica napus HOM05D004700 ORTHO05D005576 1.4e-69 267.3 259 57.1
Lsat_1_v5_gn_7_101801 Lactuca sativa HOM05D004700 ORTHO05D005576 2.4e-69 266.5 306 52.3
Ca_22302_v3 Cicer arietinum L. HOM05D004700 ORTHO05D005576 7.1e-69 265.0 256 57.8
FAN11G3801 Fragaria x ananassa HOM05D004700 ORTHO05D005576 1.6e-68 263.8 269 66.5
arahy.Tifrunner.gnm1.ann1.7PP38G Arachis hypogaea HOM05D004700 ORTHO05D005576 3.5e-68 262.7 239 76.6
FAN16G2451 Fragaria x ananassa HOM05D004700 ORTHO05D005576 6.0e-68 261.9 275 64.7
BcaB07g33326 Brassica carinata HOM05D004700 ORTHO05D005576 1.3e-67 260.8 260 56.2
CDE06G2539 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 1.8e-67 260.4 243 69.5
Psat4g157000 Pisum sativum HOM05D004700 ORTHO05D005576 3.0e-67 259.6 256 60.9
Peaxi162Scf00000g00759 Petunia axillaris HOM05D004700 ORTHO05D005576 3.9e-67 259.2 232 75.4
arahy.Tifrunner.gnm1.ann1.DP9AR5 Arachis hypogaea HOM05D004700 ORTHO05D005576 1.1e-66 257.7 248 73.0
MSTRG.12860 Avicennia marina HOM05D004700 ORTHO05D005576 1.1e-66 257.7 237 59.1
MD11G1269900 Malus domestica HOM05D004700 ORTHO05D005576 1.9e-66 256.9 229 69.4
FvH4_3g17740 Fragaria vesca HOM05D004700 ORTHO05D005576 4.0e-64 249.2 256 70.3
Zm00001eb239370 Zea mays HOM05D004700 ORTHO05D005576 4.0e-64 249.2 256 53.9
RcHm_v2.0_Chr5g0029521 Rosa chinensis HOM05D004700 ORTHO05D005576 5.3e-64 248.8 256 68.8
unitig_746.g26835 Utricularia gibba HOM05D004700 ORTHO05D005576 9.0e-64 248.1 294 49.7
Ah.06g187700 Amaranthus hybridus HOM05D004700 ORTHO05D005576 2.2e-62 243.4 232 72.0
Ah.04g164030 Amaranthus hybridus HOM05D004700 ORTHO05D005576 2.9e-62 243.0 234 70.1
BraA08t32208Z Brassica rapa HOM05D004700 ORTHO05D005576 7.1e-61 238.4 260 53.5
BraA08t32205Z Brassica rapa HOM05D004700 ORTHO05D005576 7.9e-60 235.0 257 52.9
C06p09250 Brassica napus HOM05D004700 ORTHO05D005576 2.3e-59 233.4 301 56.8
BolC6t36002H Brassica oleracea HOM05D004700 ORTHO05D005576 2.3e-59 233.4 301 56.8
A06p00990 Brassica napus HOM05D004700 ORTHO05D005576 2.8e-57 226.5 248 60.9
BraA06t23327Z Brassica rapa HOM05D004700 ORTHO05D005576 2.8e-57 226.5 248 60.9
FAN25G1946 Fragaria x ananassa HOM05D004700 ORTHO05D005576 1.1e-53 214.5 244 67.2
BcaC08g44093 Brassica carinata HOM05D004700 ORTHO05D005576 4.2e-53 212.6 242 53.3
BcaB04g17077 Brassica carinata HOM05D004700 ORTHO05D005576 9.3e-53 211.5 244 51.6
Sed0005766 Sechium edule HOM05D004700 ORTHO05D005576 1.8e-51 207.2 164 84.1
Aqoxy1G01902 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 3.9e-51 206.1 164 80.5
C06p14980 Brassica napus HOM05D004700 ORTHO05D005576 3.3e-50 203.0 234 53.0
BolC6t36675H Brassica oleracea HOM05D004700 ORTHO05D005576 3.3e-50 203.0 234 53.0
Oeu010032.1 Olea europaea HOM05D004700 ORTHO05D005576 2.0e-47 193.7 215 50.7
Sc07g0002390 Simmondsia chinensis HOM05D004700 ORTHO05D005576 3.7e-41 172.9 146 76.0
Dinv13363 Davidia involucrata HOM05D004700 ORTHO05D005576 1.8e-40 170.6 140 92.1
Sabra11G0075500 Salix brachista HOM05D004700 ORTHO05D005576 5.3e-40 169.1 149 81.9
Sabra11G0075300 Salix brachista HOM05D004700 ORTHO05D005576 2.2e-38 163.7 162 58.6
Sabra11G0076300 Salix brachista HOM05D004700 ORTHO05D005576 5.0e-38 162.5 174 53.4
CDE02G3773 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 1.1e-37 161.4 138 59.4
Sabra11G0075900 Salix brachista HOM05D004700 ORTHO05D005576 5.5e-37 159.1 165 76.4
Actinidia04620 Actinidia chinensis HOM05D004700 ORTHO05D005576 8.8e-35 151.8 116 66.4
SEGI_00597 Sequoiadendron giganteum HOM05D004700 ORTHO05D005576 8.2e-33 145.2 245 40.4
BraA05t20718Z Brassica rapa HOM05D004700 ORTHO05D005576 3.2e-29 133.3 79 82.3
Gorai.002G047100 Gossypium raimondii HOM05D004700 ORTHO05D005576 7.2e-29 132.1 182 59.3
Aqoxy1G01901 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 6.1e-28 129.0 91 72.5
Gohir.D01G038350 Gossypium hirsutum HOM05D004700 ORTHO05D005576 5.7e-26 122.5 156 63.5
Mapoly0001s0250 Marchantia polymorpha HOM05D004700 ORTHO05D005576 4.1e-24 116.3 276 45.7
AagrBONN_evm.TU.Sc2ySwM_362.885 Anthoceros agrestis HOM05D004700 ORTHO05D005576 6.7e-19 99.0 243 47.7
Zm00001eb364990 Zea mays HOM05D001185 ORTHO05D005576 7.7e-15 85.5 84 54.8
Nitab4.5_0000244g0440 Nicotiana tabacum HOM05D000856 ORTHO05D001792 3.8e-14 83.2 70 64.3
Sc07g0002380 Simmondsia chinensis HOM05D004700 ORTHO05D005576 7.2e-13 79.0 101 46.5
Pp3c8_15890 Physcomitrium patens HOM05D004700 ORTHO05D005576 1.0e-11 75.1 277 28.2
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 9.8e-10 68.6 44 77.3
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 2.2e-09 67.4 42 78.6
Actinidia04619 Actinidia chinensis HOM05D004700 ORTHO05D005576 8.6e-06 55.5 25 96.0


User provided reference genes

Program Settings