Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047868 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 3.4e-118 428.3 211 100.0
CSS0048016 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 3.4e-118 428.3 211 100.0
Dinv10954 Davidia involucrata HOM05D002231 ORTHO05D006103 4.0e-95 351.7 213 85.4
Dinv17566 Davidia involucrata HOM05D002231 ORTHO05D005593 6.4e-93 344.4 210 84.3
Hma1.2p1_0275F.1_g110740 Hydrangea macrophylla HOM05D002231 ORTHO05D006103 1.1e-92 343.6 224 81.2
Actinidia30646 Actinidia chinensis HOM05D002231 ORTHO05D006103 4.3e-89 331.6 213 81.2
Rhsim12G0025500 Rhododendron simsii HOM05D002231 ORTHO05D006103 3.7e-85 318.5 253 68.8
Cc11_g16940 Coffea canephora HOM05D002231 ORTHO05D006103 1.6e-80 303.1 212 75.9
Thecc.02G207900 Theobroma cacao HOM05D002231 ORTHO05D006103 2.8e-80 302.4 218 73.9
Gohir.A01G160300 Gossypium hirsutum HOM05D002231 ORTHO05D006103 3.6e-80 302.0 214 73.8
Gorai.002G183300 Gossypium raimondii HOM05D002231 ORTHO05D006103 6.2e-80 301.2 214 73.4
Lsat_1_v5_gn_4_3541 Lactuca sativa HOM05D002231 ORTHO05D006103 4.0e-79 298.5 215 74.9
GSVIVG01010488001 Vitis vinifera HOM05D002231 ORTHO05D006103 4.0e-79 298.5 211 77.3
Nitab4.5_0002558g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 5.2e-79 298.1 212 72.2
MSTRG.501 Avicennia marina HOM05D002231 ORTHO05D006103 6.8e-79 297.7 215 74.0
CiPaw.05G109300 Carya illinoinensis HOM05D002231 ORTHO05D006103 1.2e-78 297.0 211 73.5
Gohir.D01G147100 Gossypium hirsutum HOM05D002231 ORTHO05D006103 1.5e-78 296.6 214 72.9
vmacro01059 Vaccinium macrocarpon HOM05D002231 ORTHO05D006103 2.0e-78 296.2 281 61.2
Cfa009373 Carpinus fangiana HOM05D002231 ORTHO05D006103 7.6e-78 294.3 211 75.4
Manes.12G011000 Manihot esculenta HOM05D002231 ORTHO05D006103 8.4e-77 290.8 219 71.7
CANSAT01G1083 Cannabis sativa HOM05D002231 ORTHO05D006103 1.4e-76 290.0 213 73.7
Ciclev10032446m.g Citrus clementina HOM05D002231 ORTHO05D006103 1.4e-76 290.0 213 72.3
Prupe.1G225400 Prunus persica HOM05D002231 ORTHO05D006103 2.4e-76 289.3 211 75.4
Nn3g16455 Nelumbo nucifera HOM05D002231 ORTHO05D006103 4.2e-76 288.5 212 75.9
CiPaw.06G102900 Carya illinoinensis HOM05D002231 ORTHO05D006103 7.1e-76 287.7 213 74.6
MD16G1119800 Malus domestica HOM05D002231 ORTHO05D006103 7.1e-76 287.7 211 73.9
MD13G1119600 Malus domestica HOM05D002231 ORTHO05D006103 1.6e-75 286.6 211 73.9
Nitab4.5_0000067g0140 Nicotiana tabacum HOM05D002231 ORTHO05D006103 7.8e-75 284.3 237 65.0
RcHm_v2.0_Chr4g0430201 Rosa chinensis HOM05D002231 ORTHO05D006103 7.8e-75 284.3 211 73.0
SGA_v2.0_scaffold9G04675 Striga asiatica HOM05D002231 ORTHO05D006103 3.0e-74 282.3 215 71.6
Duzib251G0325 Durio zibethinus HOM05D002231 ORTHO05D006103 3.9e-74 282.0 224 68.3
Sopen04g017470 Solanum pennellii HOM05D002231 ORTHO05D006103 1.9e-73 279.6 211 70.6
MSTRG.8006 Avicennia marina HOM05D002231 ORTHO05D006103 3.3e-73 278.9 216 70.4
TWI36G0137 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 7.3e-73 277.7 213 71.8
Migut.J00960 Erythranthe guttata HOM05D002231 ORTHO05D006103 1.3e-72 276.9 216 69.9
Gohir.A04G139800 Gossypium hirsutum HOM05D002231 ORTHO05D006103 1.6e-72 276.6 222 66.7
QL03p052604 Quercus lobata HOM05D002231 ORTHO05D006103 2.1e-72 276.2 262 62.2
CsaV3_5G030240 Cucumis sativus L. HOM05D002231 ORTHO05D006103 1.4e-71 273.5 211 69.2
Sed0020663 Sechium edule HOM05D002231 ORTHO05D006103 1.8e-71 273.1 213 70.4
Lj3C1069T6 Lonicera japonica HOM05D002231 ORTHO05D006103 4.0e-71 271.9 208 73.6
FAN22G0585 Fragaria x ananassa HOM05D002231 ORTHO05D006103 1.5e-70 270.0 211 70.6
Sc11g0000450 Simmondsia chinensis HOM05D002231 ORTHO05D006103 1.5e-70 270.0 228 67.1
TPR.G17792 Trifolium pratense HOM05D002231 ORTHO05D006103 1.5e-70 270.0 211 67.8
Gorai.012G176000 Gossypium raimondii HOM05D002231 ORTHO05D006103 3.4e-70 268.9 218 66.5
Medtr3g085280 Medicago truncatula HOM05D002231 ORTHO05D006103 3.4e-70 268.9 211 68.2
Gohir.D04G183000 Gossypium hirsutum HOM05D002231 ORTHO05D006103 5.8e-70 268.1 220 65.9
FAN17G0493 Fragaria x ananassa HOM05D002231 ORTHO05D005593 9.9e-70 267.3 210 70.5
Aqoxy5G03366 Aquilegia oxysepala HOM05D002231 ORTHO05D006103 2.2e-69 266.2 221 67.9
Atru.chr11.2328 Acer truncatum HOM05D002231 ORTHO05D006103 2.9e-69 265.8 197 73.6
AUR62028925 Chenopodium quinoa HOM05D002231 ORTHO05D006103 4.9e-69 265.0 211 70.1
Psat5g096440 Pisum sativum HOM05D002231 ORTHO05D006103 1.1e-68 263.8 213 67.6
EL10Ac6g13507 Beta vulgaris HOM05D002231 ORTHO05D006103 1.4e-68 263.5 211 70.1
Hund25467 Selenicereus undatus HOM05D002231 ORTHO05D006103 5.4e-68 261.5 214 65.9
Glyma.11G250900 Glycine max HOM05D002231 ORTHO05D006103 7.1e-68 261.2 211 68.2
Eucgr.B03496 Eucalyptus grandis HOM05D002231 ORTHO05D006103 2.1e-67 259.6 227 63.0
FAN07G0699 Fragaria x ananassa HOM05D002231 ORTHO05D006103 2.1e-67 259.6 233 64.8
Phvul.001G262200 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 2.1e-67 259.6 211 67.8
arahy.Tifrunner.gnm1.ann1.4LX5KX Arachis hypogaea HOM05D002231 ORTHO05D006103 2.7e-67 259.2 212 67.5
arahy.Tifrunner.gnm1.ann1.A5UQ16 Arachis hypogaea HOM05D002231 ORTHO05D006103 2.7e-67 259.2 212 67.5
Glyma.18G006100 Glycine max HOM05D002231 ORTHO05D006103 6.0e-67 258.1 212 67.9
PGR102G0892 Punica granatum HOM05D002231 ORTHO05D006103 6.0e-67 258.1 222 64.0
FAN12G0590 Fragaria x ananassa HOM05D002231 ORTHO05D006103 1.0e-66 257.3 234 64.1
Lsat_1_v5_gn_3_31041 Lactuca sativa HOM05D002231 ORTHO05D006103 2.3e-66 256.1 217 62.7
PSO017G2330 Papaver somniferum HOM05D002231 ORTHO05D006103 3.0e-66 255.8 214 69.2
MELO3C011862.2 Cucumis melo HOM05D002231 ORTHO05D006103 3.9e-66 255.4 216 65.3
Lj6g0006303 Lotus japonicus HOM05D002231 ORTHO05D006103 3.9e-66 255.4 163 82.8
SalBow1G3407 Salvia bowleyana HOM05D002231 ORTHO05D006103 1.1e-65 253.8 288 53.1
Lalb_Chr23g0278101 Lupinus albus HOM05D002231 ORTHO05D006103 1.5e-65 253.4 163 79.8
VMungo1383G1118 Vigna mungo HOM05D002231 ORTHO05D006103 2.5e-65 252.7 211 66.8
Potri.003G172000 Populus trichocarpa HOM05D002231 ORTHO05D006103 5.6e-65 251.5 223 64.6
Solyc04g045580.4 Solanum lycopersicum HOM05D002231 ORTHO05D006103 7.3e-65 251.1 193 69.4
ClCG11G013620 Citrullus lanatus HOM05D002231 ORTHO05D006103 1.3e-64 250.4 212 66.0
Manes.13G011701 Manihot esculenta HOM05D002231 ORTHO05D006103 1.3e-64 250.4 164 78.7
Sabra03G0125900 Salix brachista HOM05D002231 ORTHO05D005593 8.1e-64 247.7 215 62.8
Potri.001G056500 Populus trichocarpa HOM05D002231 ORTHO05D006103 1.1e-63 247.3 218 65.1
unitig_747.g21125 Utricularia gibba HOM05D002231 ORTHO05D006103 1.4e-63 246.9 206 64.1
Duzib248G1458 Durio zibethinus HOM05D002231 ORTHO05D006103 2.4e-63 246.1 217 63.6
CDE02G1146 Ceratophyllum demersum HOM05D002231 ORTHO05D006103 3.1e-63 245.7 210 68.1
TWI18G1086 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 3.1e-63 245.7 199 68.8
TAR371G0929 Trochodendron aralioides HOM05D005804 ORTHO05D006849 3.1e-63 245.7 187 71.7
THA.LOC104807538 Tarenaya hassleriana HOM05D002231 ORTHO05D006103 4.0e-63 245.4 221 61.5
Aa31LG7G9850 Aethionema arabicum HOM05D002231 ORTHO05D006103 2.6e-62 242.7 219 62.6
Peaxi162Scf00518g00424 Petunia axillaris HOM05D002231 ORTHO05D006103 3.4e-62 242.3 162 78.4
TAR629G1028 Trochodendron aralioides HOM05D002231 ORTHO05D006103 1.3e-61 240.4 200 67.0
FvH4_4g23720 Fragaria vesca HOM05D002231 ORTHO05D006103 4.9e-61 238.4 193 68.9
Sp1g23610 Schrenkiella parvula HOM05D002231 ORTHO05D006103 4.9e-61 238.4 214 61.2
BraA07t28971Z Brassica rapa HOM05D002231 ORTHO05D006103 6.4e-61 238.0 214 60.7
C07p17810 Brassica napus HOM05D002231 ORTHO05D006103 8.4e-61 237.7 214 61.2
BolC7t42287H Brassica oleracea HOM05D002231 ORTHO05D006103 8.4e-61 237.7 214 61.2
Carub.0001s2592 Capsella rubella HOM05D002231 ORTHO05D006103 1.1e-60 237.3 216 60.2
Lalb_Chr08g0230621 Lupinus albus HOM05D002231 ORTHO05D006103 1.4e-60 236.9 170 74.1
BcaC06g35283 Brassica carinata HOM05D002231 ORTHO05D006103 1.9e-60 236.5 214 61.2
A07p11870 Brassica napus HOM05D002231 ORTHO05D006103 1.9e-60 236.5 214 60.7
A09p38550 Brassica napus HOM05D002231 ORTHO05D006103 1.9e-60 236.5 216 60.6
Oeu049136.1 Olea europaea HOM05D002231 ORTHO05D006103 2.4e-60 236.1 190 66.8
BraA09t39361Z Brassica rapa HOM05D002231 ORTHO05D006103 4.2e-60 235.3 214 60.7
Sabra01G0040900 Salix brachista HOM05D002231 ORTHO05D006103 7.1e-60 234.6 234 60.3
C05p26090 Brassica napus HOM05D002231 ORTHO05D006103 9.3e-60 234.2 212 59.9
AL1G40790 Arabidopsis lyrata HOM05D002231 ORTHO05D006103 1.6e-59 233.4 216 60.2
AT1G27385 Arabidopsis thaliana HOM05D002231 ORTHO05D006103 1.6e-59 233.4 214 59.8
CARHR026970 Cardamine hirsuta HOM05D002231 ORTHO05D006103 1.6e-59 233.4 214 60.3
BolC5t31328H Brassica oleracea HOM05D002231 ORTHO05D006103 2.7e-59 232.6 212 59.4
Phvul.L002246 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 1.0e-58 230.7 213 62.9
ECA234G2919 Erigeron canadensis HOM05D002231 ORTHO05D006103 2.3e-58 229.6 130 87.7
Ca_16456_v3 Cicer arietinum L. HOM05D002231 ORTHO05D006103 5.1e-58 228.4 194 64.9
Ah.02g130890 Amaranthus hybridus HOM05D002231 ORTHO05D006103 6.7e-58 228.0 212 63.2
Thhalv10008813m.g Eutrema salsugineum HOM05D002231 ORTHO05D006103 6.7e-58 228.0 214 58.9
Oeu029193.1 Olea europaea HOM05D002231 ORTHO05D006103 5.6e-57 224.9 167 71.9
MBI11_g05330_MAGBIO Magnolia biondii HOM05D002231 ORTHO05D006103 9.6e-57 224.2 192 69.3
Glyma.08G104500 Glycine max HOM05D002231 ORTHO05D006103 2.8e-56 222.6 212 60.8
HanXRQChr12g0385441 Helianthus annuus HOM05D002231 ORTHO05D006103 3.7e-56 222.2 207 61.4
COL.COLO4_20407 Corchorus olitorius HOM05D002231 ORTHO05D006103 3.1e-55 219.2 171 68.4
SalBow8G1223 Salvia bowleyana HOM05D002231 ORTHO05D006103 6.9e-55 218.0 214 59.8
HanXRQChr06g0174651 Helianthus annuus HOM05D002231 ORTHO05D006103 9.0e-55 217.6 215 57.2
Haze_12423 Corylus avellana HOM05D002231 ORTHO05D006103 2.0e-54 216.5 164 72.6
Nn4g22308 Nelumbo nucifera HOM05D002231 ORTHO05D006103 7.6e-54 214.5 179 67.0
Os04g0386500 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 1.7e-53 213.4 131 79.4
AUR62005623 Chenopodium quinoa HOM05D002231 ORTHO05D006103 3.8e-53 212.2 211 59.7
BcaC05g26745 Brassica carinata HOM05D002231 ORTHO05D006103 2.5e-52 209.5 210 57.6
SalBow2G1775 Salvia bowleyana HOM05D002231 ORTHO05D006103 2.5e-52 209.5 165 68.5
Cpa.g.sc808.1 Carica papaya HOM05D002231 ORTHO05D006103 4.2e-52 208.8 120 85.0
Lj4g0021495 Lotus japonicus HOM05D002231 ORTHO05D006103 5.5e-52 208.4 228 56.6
Os02g0507400 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 7.1e-52 208.0 150 68.0
BcaB03g13989 Brassica carinata HOM05D002231 ORTHO05D006103 7.9e-51 204.5 195 57.9
Zm00001eb421060 Zea mays HOM05D002231 ORTHO05D006103 3.9e-50 202.2 131 76.3
BcaC05g26552 Brassica carinata HOM05D002231 ORTHO05D006103 6.7e-50 201.4 207 54.6
ECA246G2515 Erigeron canadensis HOM05D002231 ORTHO05D006103 6.7e-50 201.4 218 52.3
DCAR_026462 Daucus carota HOM05D002231 ORTHO05D006103 2.5e-49 199.5 196 57.7
Nitab4.5_0000155g0190 Nicotiana tabacum HOM05D002231 ORTHO05D006103 3.4e-46 189.1 165 63.6
Nitab4.5_0004003g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 3.8e-45 185.7 165 63.6
HanXRQChr08g0207851 Helianthus annuus HOM05D002231 ORTHO05D006103 5.5e-44 181.8 212 51.9
Zm00001eb085510 Zea mays HOM05D002231 ORTHO05D006103 9.3e-44 181.0 133 68.4
arahy.Tifrunner.gnm1.ann1.1IJF7J Arachis hypogaea HOM05D002231 ORTHO05D006103 6.1e-43 178.3 211 50.2
SMO246G0027 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 6.7e-42 174.9 133 66.9
DCAR_007004 Daucus carota HOM05D002231 ORTHO05D006103 1.5e-41 173.7 132 71.2
ECA233G1565 Erigeron canadensis HOM05D002231 ORTHO05D006103 3.3e-41 172.6 170 57.1
SMO364G0411 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 9.7e-41 171.0 136 66.9
ATR0059G025 Amborella trichopoda HOM05D002231 ORTHO05D006103 8.2e-40 167.9 158 60.1
AagrBONN_evm.TU.Sc2ySwM_368.423 Anthoceros agrestis HOM05D002231 ORTHO05D006103 1.4e-39 167.2 130 66.9
Pp3c15_19360 Physcomitrium patens HOM05D002231 ORTHO05D006103 1.4e-39 167.2 156 59.6
arahy.Tifrunner.gnm1.ann1.RN2E3G Arachis hypogaea HOM05D002231 ORTHO05D006103 4.1e-39 165.6 149 63.8
Pp3c9_19480 Physcomitrium patens HOM05D002231 ORTHO05D006103 5.0e-37 158.7 137 61.3
CBR_g57027 Chara braunii HOM05D002231 ORTHO05D006103 1.1e-36 157.5 133 58.6
Lsat_1_v5_gn_4_56001 Lactuca sativa HOM05D002231 ORTHO05D006103 6.9e-31 138.3 221 41.2
PRCOL_00004939 Prasinoderma coloniale HOM05D002231 ORTHO05D006103 3.9e-26 122.5 132 48.5
RcHm_v2.0_Chr3g0491761 Rosa chinensis HOM05D002231 ORTHO05D006103 1.5e-20 104.0 62 85.5
TAR383G1026 Trochodendron aralioides HOM05D002231 ORTHO05D006103 3.0e-18 96.3 112 58.0
Cre02.g074700 Chlamydomonas reinhardtii HOM05D002231 ORTHO05D006103 1.7e-16 90.5 144 38.9
Cre12.g508300 Chlamydomonas reinhardtii HOM05D002231 ORTHO05D006103 2.8e-16 89.7 88 54.5
MCO02G005 Micromonas commoda HOM05D003605 ORTHO05D004292 1.8e-15 87.0 116 39.7
Cpa.g.sc43.61 Carica papaya HOM05D002231 ORTHO05D006103 6.5e-13 78.6 101 48.5
CDE05G2241 Ceratophyllum demersum HOM05D001859 ORTHO05D001836 4.7e-11 72.4 51 68.6
TAR636G2964 Trochodendron aralioides HOM05D002231 ORTHO05D006103 7.5e-09 65.1 35 94.3
C02p58440 Brassica napus HOM05D001393 ORTHO05D032808 4.8e-08 62.4 39 71.8


User provided reference genes

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