Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048015 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D005618 0.0e+00 1523.1 767 100.0
Actinidia06357 Actinidia chinensis HOM05D000751 ORTHO05D005618 0.0e+00 1187.9 767 80.4
TAR636G3589 Trochodendron aralioides HOM05D000751 ORTHO05D005618 3.8e-305 1051.2 789 69.8
Hma1.2p1_0207F.1_g087810 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 1.2e-301 1039.6 771 71.5
GSVIVG01010908001 Vitis vinifera HOM05D000751 ORTHO05D005618 1.5e-296 1022.7 772 68.9
vmacro08789 Vaccinium macrocarpon HOM05D000751 ORTHO05D005618 1.7e-289 999.2 1063 55.4
Eucgr.A01411 Eucalyptus grandis HOM05D000751 ORTHO05D005618 9.5e-280 966.8 764 64.7
Aqoxy2G02196 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 6.4e-276 954.1 780 65.0
Ciclev10030781m.g Citrus clementina HOM05D000751 ORTHO05D005618 4.6e-274 948.0 773 65.3
Lsat_1_v5_gn_7_56501 Lactuca sativa HOM05D000751 ORTHO05D005618 6.2e-271 937.6 768 65.0
Rhsim01G0197100 Rhododendron simsii HOM05D000751 ORTHO05D005618 3.4e-269 931.8 833 63.0
Nitab4.5_0000074g0030 Nicotiana tabacum HOM05D000751 ORTHO05D005618 3.8e-268 928.3 775 63.6
ECA240G3678 Erigeron canadensis HOM05D000751 ORTHO05D005618 1.1e-264 916.8 776 64.0
Duzib168G1036 Durio zibethinus HOM05D000751 ORTHO05D005618 2.1e-263 912.5 772 62.7
Nn8g40996 Nelumbo nucifera HOM05D000751 ORTHO05D005618 4.4e-261 904.8 771 62.0
CiPaw.14G110300 Carya illinoinensis HOM05D000751 ORTHO05D005618 1.3e-260 903.3 762 64.0
Cfa016755 Carpinus fangiana HOM05D000751 ORTHO05D005618 3.8e-260 901.7 722 66.1
Cc06_g22130 Coffea canephora HOM05D000751 ORTHO05D005618 4.9e-260 901.4 693 66.7
Thecc.09G180200 Theobroma cacao HOM05D000751 ORTHO05D005618 7.1e-259 897.5 767 62.6
TWI38G2172 Tripterygium wilfordii HOM05D000751 ORTHO05D005618 7.1e-259 897.5 781 62.6
Gorai.009G003500 Gossypium raimondii HOM05D000751 ORTHO05D005618 6.0e-258 894.4 617 72.0
MSTRG.26530 Avicennia marina HOM05D000751 ORTHO05D005618 1.9e-256 889.4 713 64.1
MBI16_g18209_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 1.8e-254 882.9 717 66.0
Prupe.1G079600 Prunus persica HOM05D000751 ORTHO05D005618 3.1e-254 882.1 776 61.3
Gohir.D05G003900 Gossypium hirsutum HOM05D000751 ORTHO05D005618 4.0e-254 881.7 611 72.2
Peaxi162Scf00324g00731 Petunia axillaris HOM05D000751 ORTHO05D005618 1.5e-253 879.8 759 61.4
Gohir.A05G003500 Gossypium hirsutum HOM05D000751 ORTHO05D005618 5.8e-253 877.9 611 71.2
DCAR_007397 Daucus carota HOM05D000751 ORTHO05D005618 7.6e-253 877.5 760 63.3
Nitab4.5_0008918g0010 Nicotiana tabacum HOM05D000751 ORTHO05D005618 7.6e-253 877.5 774 60.7
Atru.chr11.2504 Acer truncatum HOM05D000751 ORTHO05D005618 1.3e-252 876.7 773 60.5
EL10As14g24084 Beta vulgaris HOM05D000751 ORTHO05D005618 1.3e-252 876.7 781 58.6
Manes.17G002500 Manihot esculenta HOM05D000751 ORTHO05D005618 1.7e-252 876.3 702 63.0
EL10Ac2g02594 Beta vulgaris HOM05D000751 ORTHO05D005618 1.1e-251 873.6 781 58.4
Hund24686 Selenicereus undatus HOM05D000751 ORTHO05D005618 2.4e-251 872.5 817 57.2
MELO3C017440.2 Cucumis melo HOM05D000751 ORTHO05D005618 9.3e-251 870.5 675 66.5
CANSAT11G2085 Cannabis sativa HOM05D000751 ORTHO05D005618 1.3e-249 866.7 778 59.9
Cpa.g.sc86.27 Carica papaya HOM05D000751 ORTHO05D005618 5.1e-249 864.8 649 68.7
PSO478G0715 Papaver somniferum HOM05D000751 ORTHO05D005618 2.1e-247 859.4 774 58.0
THA.LOC104813512 Tarenaya hassleriana HOM05D000751 ORTHO05D005618 2.1e-247 859.4 765 59.6
CsaV3_1G031770 Cucumis sativus L. HOM05D000751 ORTHO05D005618 2.8e-247 859.0 715 63.2
Sed0012322 Sechium edule HOM05D000751 ORTHO05D005618 9.0e-246 854.0 712 62.8
A08p30790 Brassica napus HOM05D000751 ORTHO05D005618 7.6e-245 850.9 761 59.3
Aa31LG7G2520 Aethionema arabicum HOM05D000751 ORTHO05D005618 4.2e-243 845.1 728 60.3
Potri.003G010000 Populus trichocarpa HOM05D000751 ORTHO05D005618 7.1e-243 844.3 679 62.3
AT1G17690 Arabidopsis thaliana HOM05D000751 ORTHO05D005618 3.5e-242 842.0 762 59.2
Carub.0001s1742 Capsella rubella HOM05D000751 ORTHO05D005618 3.5e-242 842.0 768 59.0
Sc06g0007900 Simmondsia chinensis HOM05D000751 ORTHO05D005618 7.9e-242 840.9 542 74.5
PSO017G1776 Papaver somniferum HOM05D000751 ORTHO05D005618 3.9e-241 838.6 766 57.2
C08p18130 Brassica napus HOM05D000751 ORTHO05D005618 1.3e-239 833.6 752 58.2
AL1G30040 Arabidopsis lyrata HOM05D000751 ORTHO05D005618 6.3e-239 831.2 763 58.1
Thhalv10006892m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 6.3e-239 831.2 742 58.8
Migut.L01901 Erythranthe guttata HOM05D000751 ORTHO05D005618 1.1e-238 830.5 593 67.5
RcHm_v2.0_Chr4g0400251 Rosa chinensis HOM05D000751 ORTHO05D005618 1.4e-238 830.1 725 60.7
BolC8t49447H Brassica oleracea HOM05D000751 ORTHO05D005618 1.5e-237 826.6 763 57.4
HanXRQChr03g0068331 Helianthus annuus HOM05D000751 ORTHO05D005618 5.0e-236 821.6 746 59.8
BraA08t35010Z Brassica rapa HOM05D000751 ORTHO05D005618 3.3e-232 808.9 757 56.5
CARHR018290 Cardamine hirsuta HOM05D000751 ORTHO05D005618 4.3e-232 808.5 759 57.2
FvH4_4g07640 Fragaria vesca HOM05D000751 ORTHO05D005618 2.8e-231 805.8 781 56.1
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 1.1e-227 793.9 573 68.6
SGA_v2.0_scaffold595G53113 Striga asiatica HOM05D000751 ORTHO05D005618 1.4e-227 793.5 645 61.4
Sopen07g005110 Solanum pennellii HOM05D000751 ORTHO05D005618 2.1e-226 789.6 712 60.1
Glyma.09G057700 Glycine max HOM05D000751 ORTHO05D005618 1.1e-222 777.3 684 58.6
Lalb_Chr02g0148081 Lupinus albus HOM05D000751 ORTHO05D005618 1.4e-222 776.9 655 61.2
Phvul.009G238100 Phaseolus vulgaris HOM05D000751 ORTHO05D005618 2.4e-222 776.2 686 58.6
FAN07G1720 Fragaria x ananassa HOM05D000751 ORTHO05D005618 2.0e-221 773.1 807 54.2
Cc06_g21130 Coffea canephora HOM05D000751 ORTHO05D005618 2.6e-221 772.7 551 69.5
ClCG06G013510 Citrullus lanatus HOM05D000751 ORTHO05D005618 1.7e-220 770.0 759 55.1
VMungo1309G0231 Vigna mungo HOM05D000751 ORTHO05D005618 9.4e-219 764.2 697 57.8
Lj6g0015551 Lotus japonicus HOM05D000751 ORTHO05D005618 5.1e-217 758.4 654 60.7
ATR0626G151 Amborella trichopoda HOM05D000751 ORTHO05D005618 6.3e-215 751.5 741 54.3
Thhalv10023137m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 3.5e-213 745.7 708 55.9
CDE06G1960 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 1.1e-211 740.7 705 55.9
SalBow1G4534 Salvia bowleyana HOM05D000751 ORTHO05D005618 1.1e-211 740.7 597 61.0
TPR.G9024 Trifolium pratense HOM05D000751 ORTHO05D005618 1.1e-211 740.7 689 56.7
SalBow6G0847 Salvia bowleyana HOM05D000751 ORTHO05D005618 3.0e-209 732.6 613 60.0
FAN17G2112 Fragaria x ananassa HOM05D000751 ORTHO05D005618 2.0e-208 729.9 777 53.0
Oeu047314.3 Olea europaea HOM05D000751 ORTHO05D005618 1.8e-206 723.4 721 54.6
unitig_8.g3549 Utricularia gibba HOM05D000751 ORTHO05D005618 8.5e-204 714.5 696 55.3
Medtr2g036890 Medicago truncatula HOM05D000751 ORTHO05D005618 1.6e-202 710.3 702 53.4
arahy.Tifrunner.gnm1.ann1.QPM7FK Arachis hypogaea HOM05D000751 ORTHO05D005618 4.4e-200 702.2 709 52.9
FAN12G3496 Fragaria x ananassa HOM05D000751 ORTHO05D005618 1.8e-198 696.8 781 51.3
Medtr2g012650 Medicago truncatula HOM05D000751 ORTHO05D005618 2.0e-197 693.3 702 53.0
Aqoxy2G02322 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 3.8e-196 689.1 686 57.4
AUR62014975 Chenopodium quinoa HOM05D000751 ORTHO05D005618 2.6e-192 676.4 668 53.7
Carub.0003s1065 Capsella rubella HOM05D000751 ORTHO05D005618 1.6e-186 657.1 733 50.8
SalBow6G2294 Salvia bowleyana HOM05D000751 ORTHO05D005618 2.0e-184 650.2 843 46.6
Zm00001eb406370 Zea mays HOM05D000751 ORTHO05D005618 7.3e-179 631.7 656 50.6
Os05g0295100 Oryza sativa ssp. japonica HOM05D000751 ORTHO05D005618 2.8e-178 629.8 643 51.5
arahy.Tifrunner.gnm1.ann1.4Y102Q Arachis hypogaea HOM05D000751 ORTHO05D005618 1.5e-176 624.0 601 54.7
DCAR_007396 Daucus carota HOM05D000751 ORTHO05D005618 2.2e-175 620.2 574 60.1
MD03G1036400 Malus domestica HOM05D000751 ORTHO05D005618 4.9e-175 619.0 599 57.1
AagrBONN_evm.TU.Sc2ySwM_369.592 Anthoceros agrestis HOM05D000751 ORTHO05D005618 3.5e-173 612.8 795 45.5
Mapoly0074s0025 Marchantia polymorpha HOM05D000751 ORTHO05D005618 1.2e-170 604.4 718 46.1
CDE02G3188 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 1.3e-167 594.3 405 70.6
Cc10_g11360 Coffea canephora HOM05D000751 ORTHO05D005618 4.1e-166 589.3 700 50.6
SMO296G0020 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 2.8e-162 576.6 616 48.4
Aqoxy1G02673 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.8e-161 573.9 547 59.2
Pp3c10_17670 Physcomitrium patens HOM05D000751 ORTHO05D005618 3.1e-161 573.2 764 44.1
MD13G1251200 Malus domestica HOM05D000751 ORTHO05D005618 4.3e-155 552.7 381 71.4
Dinv26447 Davidia involucrata HOM05D000751 ORTHO05D005618 9.6e-155 551.6 451 67.2
CBR_g38171 Chara braunii HOM05D000751 ORTHO05D005618 2.7e-141 506.9 661 43.9
SalBow6G6994 Salvia bowleyana HOM05D000751 ORTHO05D005618 1.6e-138 497.7 739 42.5
Glyma.15G163800 Glycine max HOM05D000751 ORTHO05D005618 1.1e-134 485.0 402 61.2
CAN.G193.38 Capsicum annuum HOM05D000751 ORTHO05D005618 8.7e-132 475.3 360 65.3
CAN.G266.4 Capsicum annuum HOM05D000751 ORTHO05D005618 8.7e-132 475.3 311 74.3
AUR62030665 Chenopodium quinoa HOM05D000751 ORTHO05D005618 2.8e-130 470.3 325 68.6
SEGI_35111 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 1.9e-123 447.6 293 71.3
HPP92_028564 Vanilla planifolia HOM05D000751 ORTHO05D005618 2.4e-121 440.7 331 65.3
Hma1.2p1_0909F.1_g235820 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 3.8e-119 433.3 564 47.9
SMO174G0270 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 4.4e-107 393.3 496 42.9
Cre04.g218300 Chlamydomonas reinhardtii HOM05D000751 ORTHO05D005618 8.2e-106 389.0 446 44.2
BcaB05g23995 Brassica carinata HOM05D000751 ORTHO05D005618 3.8e-103 380.2 516 43.2
COL.COLO4_25458 Corchorus olitorius HOM05D000751 ORTHO05D005618 2.7e-101 374.0 516 46.3
MCO16G456 Micromonas commoda HOM05D000751 ORTHO05D005618 3.0e-100 370.5 527 40.8
BolC2t08163H Brassica oleracea HOM05D000751 ORTHO05D005618 2.0e-96 357.8 353 52.4
Psat4g182200 Pisum sativum HOM05D000751 ORTHO05D005618 7.0e-81 306.2 303 55.8
Cfa022413 Carpinus fangiana HOM05D000751 ORTHO05D005618 5.9e-80 303.1 772 31.6
PRCOL_00003641 Prasinoderma coloniale HOM05D000751 ORTHO05D005618 1.9e-78 298.1 600 31.7
Ca_05496_v3 Cicer arietinum L. HOM05D000751 ORTHO05D005618 2.8e-77 294.3 330 51.2
HPP92_003076 Vanilla planifolia HOM05D000751 ORTHO05D005618 6.6e-71 273.1 207 65.7
Cc06_g21120 Coffea canephora HOM05D000751 ORTHO05D005618 7.3e-70 269.6 156 82.7
Solyc07g009350.4 Solanum lycopersicum HOM05D000751 ORTHO05D005618 4.0e-68 263.8 376 46.0
Nn2g10858 Nelumbo nucifera HOM05D000751 ORTHO05D005618 3.7e-66 257.3 154 78.6
SEGI_01124 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 4.7e-61 240.4 147 76.2
arahy.Tifrunner.gnm1.ann1.EK4LKE Arachis hypogaea HOM05D000751 ORTHO05D005618 2.9e-58 231.1 147 75.5
Medtr8g466490 Medicago truncatula HOM05D000751 ORTHO05D005618 6.4e-58 229.9 287 45.3
Psat4g047120 Pisum sativum HOM05D000751 ORTHO05D005618 6.4e-58 229.9 201 61.7
Haze_19748 Corylus avellana HOM05D000751 ORTHO05D005618 1.4e-57 228.8 342 43.3
HPP92_028565 Vanilla planifolia HOM05D000751 ORTHO05D005618 1.2e-56 225.7 135 78.5
AUR62024882 Chenopodium quinoa HOM05D000751 ORTHO05D005618 2.0e-56 224.9 228 48.7
SEGI_01043 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 1.5e-54 218.8 197 58.4
BcaC03g14585 Brassica carinata HOM05D000751 ORTHO05D005618 1.8e-52 211.8 284 46.1
MD13G1251100 Malus domestica HOM05D000751 ORTHO05D005618 2.6e-51 208.0 383 38.9
CAN.G266.3 Capsicum annuum HOM05D000751 ORTHO05D005618 1.1e-46 192.6 241 46.5
Medtr4g415340 Medicago truncatula HOM05D000751 ORTHO05D005618 5.2e-44 183.7 302 42.4
Hma1.2p1_2432F.1_g322050 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 3.5e-40 171.0 278 41.0
COL.COLO4_25459 Corchorus olitorius HOM05D000751 ORTHO05D005618 1.0e-39 169.5 118 72.0
Medtr8g466500 Medicago truncatula HOM05D000751 ORTHO05D005618 5.6e-38 163.7 225 44.4
Sc06g0007910 Simmondsia chinensis HOM05D000751 ORTHO05D005618 8.1e-37 159.8 294 38.8
Aqoxy3G01439 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 6.9e-36 156.8 92 79.3
Nn2g10857 Nelumbo nucifera HOM05D000751 ORTHO05D005618 2.6e-35 154.8 84 86.9
Sabra15G0073700 Salix brachista HOM05D000810 ORTHO05D005618 2.1e-32 145.2 297 33.7
Psat4g182280 Pisum sativum HOM05D000751 ORTHO05D005618 1.1e-30 139.4 83 74.7
SEGI_01614 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 2.0e-27 128.6 85 65.9
CAN.G101.3 Capsicum annuum HOM05D000751 ORTHO05D005618 1.7e-26 125.6 105 62.9
Aqoxy2G02180 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 4.9e-26 124.0 137 50.4
Aqoxy125s004 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.1e-25 122.9 100 65.0
Gorai.003G081200 Gossypium raimondii HOM05D000751 ORTHO05D005618 3.2e-25 121.3 70 78.6
Sopen07g005100 Solanum pennellii HOM05D000002 ORTHO05D000001 7.9e-24 116.7 70 78.6
Hma1.2p1_2432F.1_g322060 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 6.7e-23 113.6 85 67.1
Hma1.2p1_2432F.1_g322070 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 5.8e-19 100.5 92 60.9
HPP92_003077 Vanilla planifolia HOM05D000751 ORTHO05D005618 6.7e-15 87.0 82 57.3
Aqoxy1G02674 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 5.3e-12 77.4 97 43.3
Rhsim03G0091700 Rhododendron simsii HOM05D000751 ORTHO05D340051 2.1e-08 65.5 139 32.4
MD13G1245100 Malus domestica HOM05D000751 ORTHO05D005618 8.7e-07 60.1 43 65.1
Cpa.g.sc86.29 Carica papaya HOM05D000751 ORTHO05D005618 9.7e-06 56.6 106 39.6


User provided reference genes

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