Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048014 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 1.6e-174 616.3 380 100.0
CSS0029007 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 4.0e-170 601.7 380 98.4
CSS0048085 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 9.9e-129 464.2 373 69.7
CSS0027854 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 4.2e-127 458.8 373 69.2
Rhsim11G0095300 Rhododendron simsii HOM05D001340 ORTHO05D005342 1.1e-119 434.1 376 66.8
vmacro01564 Vaccinium macrocarpon HOM05D001340 ORTHO05D005342 3.8e-104 382.5 377 60.2
Cfa006706 Carpinus fangiana HOM05D001340 ORTHO05D002318 8.8e-101 371.3 378 56.1
Actinidia35521 Actinidia chinensis HOM05D001340 ORTHO05D005342 4.4e-100 369.0 325 65.5
Potri.005G014100 Populus trichocarpa HOM05D001340 ORTHO05D005342 1.1e-98 364.4 374 57.0
Potri.013G008400 Populus trichocarpa HOM05D001340 ORTHO05D005342 7.0e-98 361.7 378 55.6
Hma1.2p1_0008F-1.1_g005585 Hydrangea macrophylla HOM05D001340 ORTHO05D005342 4.7e-94 349.0 371 55.5
Cc02_g35070 Coffea canephora HOM05D001340 ORTHO05D005342 2.0e-92 343.6 379 54.4
Sabra13G0007100 Salix brachista HOM05D001340 ORTHO05D005342 4.4e-92 342.4 405 51.6
Lj5g0005524 Lotus japonicus HOM05D001340 ORTHO05D005342 5.7e-92 342.0 382 52.9
Thecc.05G323400 Theobroma cacao HOM05D001340 ORTHO05D005342 6.3e-91 338.6 374 55.6
Cpa.g.sc48.165 Carica papaya HOM05D001340 ORTHO05D005342 7.0e-90 335.1 365 52.1
TWI36G1129 Tripterygium wilfordii HOM05D001340 ORTHO05D005342 4.5e-89 332.4 372 53.0
Psat0s3278g0040 Pisum sativum HOM05D001340 ORTHO05D005342 5.9e-89 332.0 372 52.2
CiPaw.08G155200 Carya illinoinensis HOM05D001340 ORTHO05D005342 1.0e-88 331.3 380 52.4
Oeu000006.2 Olea europaea HOM05D001340 ORTHO05D005342 1.1e-87 327.8 374 55.3
QL03p013901 Quercus lobata HOM05D001340 ORTHO05D005342 1.5e-87 327.4 378 53.4
Lj5C332T2 Lonicera japonica HOM05D001340 ORTHO05D005342 2.5e-87 326.6 390 52.8
Gorai.007G306700 Gossypium raimondii HOM05D001340 ORTHO05D005342 3.6e-86 322.8 377 52.8
Gohir.D11G283800 Gossypium hirsutum HOM05D001340 ORTHO05D005342 4.7e-86 322.4 377 52.8
arahy.Tifrunner.gnm1.ann1.Y2Y4QF Arachis hypogaea HOM05D001340 ORTHO05D005342 4.0e-85 319.3 373 50.4
Medtr1g084100 Medicago truncatula HOM05D001340 ORTHO05D005342 1.2e-84 317.8 373 50.9
GSVIVG01031244001 Vitis vinifera HOM05D001340 ORTHO05D002318 1.7e-83 313.9 376 52.4
arahy.Tifrunner.gnm1.ann1.CI26SV Arachis hypogaea HOM05D001340 ORTHO05D005342 2.2e-83 313.5 377 50.1
DCAR_029350 Daucus carota HOM05D001340 ORTHO05D005342 2.2e-83 313.5 381 51.2
Manes.09G177200 Manihot esculenta HOM05D001340 ORTHO05D005342 6.3e-83 312.0 375 50.1
MSTRG.20379 Avicennia marina HOM05D001340 ORTHO05D005342 1.4e-82 310.8 375 52.3
Eucgr.L00263 Eucalyptus grandis HOM05D001340 ORTHO05D005342 1.4e-82 310.8 375 50.1
Nn4g25585 Nelumbo nucifera HOM05D001340 ORTHO05D005342 1.4e-82 310.8 370 49.7
AT1G56440 Arabidopsis thaliana HOM05D001340 ORTHO05D005342 1.8e-82 310.5 394 48.2
Nitab4.5_0000155g0120 Nicotiana tabacum HOM05D001340 ORTHO05D005342 2.0e-81 307.0 366 52.5
Aa31LG2G11470 Aethionema arabicum HOM05D001340 ORTHO05D005342 1.3e-80 304.3 395 47.3
COL.COLO4_05548 Corchorus olitorius HOM05D001340 ORTHO05D005342 1.3e-80 304.3 377 49.3
Migut.B00963 Erythranthe guttata HOM05D001340 ORTHO05D005342 1.3e-80 304.3 366 51.6
CARHR055170 Cardamine hirsuta HOM05D001340 ORTHO05D005342 2.5e-79 300.1 395 47.3
Hund07313 Selenicereus undatus HOM05D001340 ORTHO05D005342 2.5e-79 300.1 375 48.3
TPR.G2618 Trifolium pratense HOM05D001340 ORTHO05D005342 3.2e-79 299.7 373 48.0
RcHm_v2.0_Chr3g0457141 Rosa chinensis HOM05D001340 ORTHO05D005342 4.2e-79 299.3 378 49.2
Lalb_Chr02g0147791 Lupinus albus HOM05D001340 ORTHO05D005342 5.5e-79 298.9 386 47.4
AL1G66140 Arabidopsis lyrata HOM05D001340 ORTHO05D005342 7.2e-79 298.5 372 49.5
Peaxi162Scf00595g00424 Petunia axillaris HOM05D001340 ORTHO05D005342 9.4e-79 298.1 369 51.2
Sed0025878 Sechium edule HOM05D001340 ORTHO05D005342 9.4e-79 298.1 376 48.4
MD12G1205500 Malus domestica HOM05D001340 ORTHO05D005342 4.7e-78 295.8 370 50.0
SGA_v2.0_scaffold4G01971 Striga asiatica HOM05D001340 ORTHO05D005342 6.1e-78 295.4 387 50.4
Sp2g06370 Schrenkiella parvula HOM05D001340 ORTHO05D005342 1.0e-77 294.7 394 45.9
MELO3C004179.2 Cucumis melo HOM05D001340 ORTHO05D005342 1.8e-77 293.9 374 48.7
Lj5g0009841 Lotus japonicus HOM05D001340 ORTHO05D005342 1.8e-77 293.9 387 47.8
Phvul.007G201600 Phaseolus vulgaris HOM05D001340 ORTHO05D005342 1.8e-77 293.9 376 47.6
ClCG02G014870 Citrullus lanatus HOM05D001340 ORTHO05D005342 2.3e-77 293.5 377 49.6
FAN05G0225 Fragaria x ananassa HOM05D001340 ORTHO05D005342 3.0e-77 293.1 383 48.0
Carub.0002s0770 Capsella rubella HOM05D001340 ORTHO05D005342 4.0e-77 292.7 371 48.5
A03p66580 Brassica napus HOM05D001340 ORTHO05D005342 5.2e-77 292.4 387 46.3
VMungo0720G0959 Vigna mungo HOM05D001340 ORTHO05D005342 5.2e-77 292.4 380 47.6
Atru.chr2.201 Acer truncatum HOM05D001340 ORTHO05D005342 1.2e-76 291.2 380 49.5
Thhalv10023436m.g Eutrema salsugineum HOM05D001340 ORTHO05D005342 1.2e-76 291.2 395 45.8
FAN09G1839 Fragaria x ananassa HOM05D001340 ORTHO05D005342 1.2e-76 291.2 376 50.0
BcaC02g10729 Brassica carinata HOM05D001340 ORTHO05D005342 1.5e-76 290.8 383 45.7
Ciclev10003914m.g Citrus clementina HOM05D001340 ORTHO05D002318 1.5e-76 290.8 376 48.7
CsaV3_2G007140 Cucumis sativus L. HOM05D001340 ORTHO05D005342 1.5e-76 290.8 378 48.4
FAN14G4490 Fragaria x ananassa HOM05D001340 ORTHO05D005342 1.5e-76 290.8 376 49.7
Sopen10g015810 Solanum pennellii HOM05D001340 ORTHO05D005342 3.4e-76 289.7 374 50.0
BraA03t15714Z Brassica rapa HOM05D001340 ORTHO05D005342 5.7e-76 288.9 382 46.6
SalBow7G3618 Salvia bowleyana HOM05D001340 ORTHO05D005342 5.7e-76 288.9 366 50.3
TAR633G1496 Trochodendron aralioides HOM05D000961 ORTHO05D000841 7.5e-76 288.5 331 53.5
THA.LOC104816892 Tarenaya hassleriana HOM05D001340 ORTHO05D005342 1.3e-75 287.7 384 46.1
C04p27080 Brassica napus HOM05D001340 ORTHO05D005342 2.8e-75 286.6 379 45.9
BolC4t24084H Brassica oleracea HOM05D001340 ORTHO05D005342 2.8e-75 286.6 379 45.9
Solyc10g045540.2 Solanum lycopersicum HOM05D001340 ORTHO05D005342 2.8e-75 286.6 376 49.5
CANSAT54G2301 Cannabis sativa HOM05D001340 ORTHO05D005342 4.8e-75 285.8 374 46.8
Dinv30896 Davidia involucrata HOM05D000961 ORTHO05D000841 8.3e-75 285.0 395 47.3
FAN02G4226 Fragaria x ananassa HOM05D001340 ORTHO05D005342 8.3e-75 285.0 376 48.9
Dinv24447 Davidia involucrata HOM05D000961 ORTHO05D000841 1.1e-74 284.6 362 50.6
PSO170G0183 Papaver somniferum HOM05D001340 ORTHO05D005342 3.1e-74 283.1 373 47.2
Gohir.A11G273700 Gossypium hirsutum HOM05D001340 ORTHO05D005342 9.1e-74 281.6 342 52.3
Sabra05G0009600 Salix brachista HOM05D001340 ORTHO05D005342 1.2e-73 281.2 387 48.1
Ca_10175_v3 Cicer arietinum L. HOM05D001340 ORTHO05D005342 5.9e-73 278.9 372 45.4
HanXRQChr06g0173421 Helianthus annuus HOM05D001340 ORTHO05D005342 1.0e-72 278.1 367 48.5
BcaB04g20162 Brassica carinata HOM05D001340 ORTHO05D005342 1.3e-72 277.7 375 45.3
Glyma.20G096900 Glycine max HOM05D001340 ORTHO05D005342 2.9e-72 276.6 371 45.6
BolC1t03489H Brassica oleracea HOM05D001340 ORTHO05D005342 5.0e-72 275.8 408 43.6
Glyma.10G146800 Glycine max HOM05D001340 ORTHO05D005342 1.5e-71 274.2 371 45.3
PSO357G0240 Papaver somniferum HOM05D001340 ORTHO05D005342 1.5e-71 274.2 373 46.9
BraA01t02887Z Brassica rapa HOM05D001340 ORTHO05D005342 4.7e-70 269.2 376 43.9
BcaC09g49556 Brassica carinata HOM05D001340 ORTHO05D005342 3.0e-69 266.5 373 46.1
C01p35320 Brassica napus HOM05D001340 ORTHO05D005342 6.8e-69 265.4 388 45.4
MBI19_g40070_MAGBIO Magnolia biondii HOM05D001340 ORTHO05D005342 3.4e-68 263.1 388 43.3
ATR0796G093 Amborella trichopoda HOM05D001340 ORTHO05D005342 1.3e-67 261.2 376 44.1
PGR083G1716 Punica granatum HOM05D001340 ORTHO05D005342 2.2e-67 260.4 374 44.4
A01p27480 Brassica napus HOM05D001340 ORTHO05D005342 3.7e-67 259.6 373 45.0
Ah.04g158660 Amaranthus hybridus HOM05D001340 ORTHO05D005342 4.9e-67 259.2 382 43.2
Lsat_1_v5_gn_9_121900 Lactuca sativa HOM05D001340 ORTHO05D005342 4.5e-65 252.7 363 45.7
Sc09g0002630 Simmondsia chinensis HOM05D001340 ORTHO05D005342 1.1e-63 248.1 339 47.5
Duzib106G0021 Durio zibethinus HOM05D001340 ORTHO05D005342 1.5e-63 247.7 379 44.3
Aqoxy7G01123 Aquilegia oxysepala HOM05D001340 ORTHO05D005342 2.5e-63 246.9 369 42.3
Sabra05G0022300 Salix brachista HOM05D001340 ORTHO05D005342 1.0e-61 241.5 342 47.1
QL03p014779 Quercus lobata HOM05D001340 ORTHO05D005342 2.2e-59 233.8 156 74.4
Sabra05G0010800 Salix brachista HOM05D001340 ORTHO05D005342 2.2e-59 233.8 355 43.7
unitig_46.g18366 Utricularia gibba HOM05D001340 ORTHO05D005342 8.3e-59 231.9 373 43.2
EL10Ac4g09460 Beta vulgaris HOM05D001340 ORTHO05D005342 1.1e-58 231.5 387 40.6
Glyma.20G097300 Glycine max HOM05D001340 ORTHO05D005342 1.0e-56 224.9 301 46.5
ECA233G1072 Erigeron canadensis HOM05D004203 ORTHO05D004830 3.9e-56 223.0 357 41.5
FvH4_6g07471 Fragaria vesca HOM05D001340 ORTHO05D005342 1.1e-55 221.5 314 47.5
CDE01G0158 Ceratophyllum demersum HOM05D000961 ORTHO05D000841 4.7e-54 216.1 366 37.7
Os05g0129900 Oryza sativa ssp. japonica HOM05D001340 ORTHO05D005342 1.1e-53 214.9 371 37.2
AUR62000388 Chenopodium quinoa HOM05D001340 ORTHO05D005342 3.1e-53 213.4 352 43.8
AUR62006743 Chenopodium quinoa HOM05D001340 ORTHO05D005342 1.2e-52 211.5 339 43.1
HPP92_013522 Vanilla planifolia HOM05D001340 ORTHO05D005342 5.8e-52 209.1 367 39.0
CSS0004963 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 6.4e-51 205.7 121 90.9
RcHm_v2.0_Chr3g0457171 Rosa chinensis HOM05D001340 ORTHO05D005342 1.9e-50 204.1 312 45.5
QL03p008601 Quercus lobata HOM05D001340 ORTHO05D005342 2.4e-50 203.8 165 63.6
QL03p008578 Quercus lobata HOM05D001340 ORTHO05D005342 1.1e-45 188.3 275 46.2
Zm00001eb354870 Zea mays HOM05D001340 ORTHO05D005342 8.9e-45 185.3 367 36.2
Peaxi162Scf00750g00034 Petunia axillaris HOM05D001340 ORTHO05D005342 8.3e-43 178.7 375 40.0
QL03p013877 Quercus lobata HOM05D001340 ORTHO05D005342 8.3e-43 178.7 156 62.2
Prupe.6G312500 Prunus persica HOM05D001340 ORTHO05D002318 1.6e-41 174.5 300 43.7
Prupe.3G076000 Prunus persica HOM05D001340 ORTHO05D005342 1.9e-39 167.5 151 58.9
Glyma.06G236676 Glycine max HOM05D000961 ORTHO05D005342 2.8e-38 163.7 281 40.2
Pp3c24_17620 Physcomitrium patens HOM05D001340 ORTHO05D005342 5.2e-37 159.5 411 29.0
Mapoly0127s0050 Marchantia polymorpha HOM05D001340 ORTHO05D005342 1.2e-36 158.3 373 31.9
SEGI_27730 Sequoiadendron giganteum HOM05D001340 ORTHO05D005342 2.0e-36 157.5 153 48.4
Sabra05G0021500 Salix brachista HOM05D001340 ORTHO05D005342 1.7e-35 154.5 102 73.5
QL03p014849 Quercus lobata HOM05D001340 ORTHO05D005342 1.9e-34 151.0 154 51.9
TAR706G0001 Trochodendron aralioides HOM05D001340 ORTHO05D005342 4.2e-34 149.8 170 54.1
Sabra05G0010200 Salix brachista HOM05D001340 ORTHO05D005342 9.2e-34 148.7 393 34.4
Gorai.009G392200 Gossypium raimondii HOM05D001340 ORTHO05D005342 1.2e-33 148.3 98 74.5
Gohir.D10G111266 Gossypium hirsutum HOM05D001340 ORTHO05D005342 5.1e-32 142.9 98 71.4
SMO119G0158 Selaginella moellendorffii HOM05D001340 ORTHO05D005342 6.6e-32 142.5 375 29.3
Nitab4.5_0007698g0020 Nicotiana tabacum HOM05D001340 ORTHO05D005342 2.0e-28 131.0 153 54.9
AagrBONN_evm.TU.Sc2ySwM_340.376 Anthoceros agrestis HOM05D001340 ORTHO05D005342 1.0e-24 118.6 376 26.1
CAN.G1.66 Capsicum annuum HOM05D001340 ORTHO05D005342 3.0e-24 117.1 109 66.1
QL03p013832 Quercus lobata HOM05D001340 ORTHO05D005342 4.8e-22 109.8 224 39.3
PSO541G4969 Papaver somniferum HOM05D001340 ORTHO05D005342 1.9e-18 97.8 69 72.5
Nn1g02026 Nelumbo nucifera HOM05D001340 ORTHO05D005342 9.3e-18 95.5 57 84.2
CBR_g3787 Chara braunii HOM05D001340 ORTHO05D005342 1.2e-17 95.1 127 39.4
QL03p014812 Quercus lobata HOM05D001340 ORTHO05D025918 1.2e-17 95.1 212 39.2
CBR_g48354 Chara braunii HOM05D001340 ORTHO05D005342 6.0e-17 92.8 127 38.6
CBR_g45761 Chara braunii HOM05D001340 ORTHO05D005342 3.3e-15 87.0 157 35.0
Gorai.005G157900 Gossypium raimondii HOM05D001340 ORTHO05D005342 4.3e-15 86.7 83 59.0
CBR_g18648 Chara braunii HOM05D001340 ORTHO05D005342 2.8e-14 84.0 369 25.7
Haze_04058 Corylus avellana HOM05D001340 ORTHO05D005342 2.0e-12 77.8 120 46.7
RcHm_v2.0_Chr3g0457161 Rosa chinensis HOM05D001340 ORTHO05D005342 2.0e-12 77.8 66 53.0
AUR62015660 Chenopodium quinoa HOM05D001340 ORTHO05D005342 3.4e-12 77.0 109 44.0
AUR62015688 Chenopodium quinoa HOM05D001340 ORTHO05D005342 5.8e-12 76.3 86 46.5
EL10Ac3g04962 Beta vulgaris HOM05D001340 ORTHO05D005342 1.0e-11 75.5 119 43.7
EL10Ac1g01661 Beta vulgaris HOM05D001340 ORTHO05D005342 2.2e-11 74.3 69 53.6
AUR62015693 Chenopodium quinoa HOM05D001340 ORTHO05D005342 4.9e-11 73.2 66 57.6
AUR62031620 Chenopodium quinoa HOM05D001340 ORTHO05D005342 4.9e-11 73.2 77 49.4
PRCOL_00000652 Prasinoderma coloniale HOM05D001340 ORTHO05D005342 1.1e-10 72.0 382 35.6
Cre02.g084900 Chlamydomonas reinhardtii HOM05D001340 ORTHO05D005342 1.9e-07 61.2 377 22.5
PGSC0003DMG400008293 Solanum tuberosum HOM05D001340 ORTHO05D005342 4.3e-07 60.1 64 56.2
SEGI_22675 Sequoiadendron giganteum HOM05D001310 ORTHO05D001283 5.7e-07 59.7 60 48.3
MD06G1227100 Malus domestica HOM05D001310 ORTHO05D001283 1.3e-06 58.5 54 57.4
Aa31LG3G17590 Aethionema arabicum HOM05D001310 ORTHO05D001283 1.6e-06 58.2 56 51.8
SGA_v2.0_scaffold36G14382 Striga asiatica HOM05D001310 ORTHO05D001283 1.6e-06 58.2 65 46.2
Pp3c21_15890 Physcomitrium patens HOM05D001310 ORTHO05D001283 3.7e-06 57.0 65 49.2
EL10Ac5g11565 Beta vulgaris HOM05D001310 ORTHO05D001283 4.8e-06 56.6 65 47.7
COL.COLO4_04375 Corchorus olitorius HOM05D001310 ORTHO05D001283 4.8e-06 56.6 53 54.7
Lsat_1_v5_gn_8_301 Lactuca sativa HOM05D001310 ORTHO05D001283 4.8e-06 56.6 53 54.7
HanXRQChr05g0142641 Helianthus annuus HOM05D001310 ORTHO05D001283 6.2e-06 56.2 53 54.7
Lj5C158T11 Lonicera japonica HOM05D001310 ORTHO05D001283 6.2e-06 56.2 65 47.7
Sc18g0006830 Simmondsia chinensis HOM05D001310 ORTHO05D001283 6.2e-06 56.2 53 52.8


User provided reference genes

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