Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 0.0e+00 1883.2 980 100.0
CSS0016984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 0.0e+00 1805.4 980 96.7
Dinv27073 Davidia involucrata HOM05D005408 ORTHO05D006790 0.0e+00 1300.0 992 70.8
Actinidia20821 Actinidia chinensis HOM05D005408 ORTHO05D006790 0.0e+00 1288.5 989 71.9
Dinv29839 Davidia involucrata HOM05D005408 ORTHO05D006790 0.0e+00 1238.4 953 70.3
vmacro15459 Vaccinium macrocarpon HOM05D005408 ORTHO05D006790 0.0e+00 1169.1 1113 61.3
Rhsim02G0041600 Rhododendron simsii HOM05D005408 ORTHO05D006790 0.0e+00 1147.9 1160 59.0
TAR633G1608 Trochodendron aralioides HOM05D005408 ORTHO05D006790 6.7e-312 1073.5 1014 60.4
Thecc.04G259100 Theobroma cacao HOM05D005408 ORTHO05D006790 4.6e-303 1044.6 991 59.9
GSVIVG01027854001 Vitis vinifera HOM05D005408 ORTHO05D006790 3.9e-302 1041.6 991 59.7
Duzib151G0888 Durio zibethinus HOM05D005408 ORTHO05D006790 4.0e-299 1031.6 989 59.2
Prupe.1G042300 Prunus persica HOM05D005408 ORTHO05D006790 5.3e-299 1031.2 1005 60.2
Lj3A679T38 Lonicera japonica HOM05D005408 ORTHO05D006790 6.4e-297 1024.2 1019 58.2
DCAR_024278 Daucus carota HOM05D005408 ORTHO05D006790 7.1e-296 1020.8 997 58.5
Lj3A684T25 Lonicera japonica HOM05D005408 ORTHO05D006790 2.1e-295 1019.2 1019 58.1
TAR362G0279 Trochodendron aralioides HOM05D005408 ORTHO05D006790 3.5e-295 1018.5 1001 57.5
Duzib212G0761 Durio zibethinus HOM05D005408 ORTHO05D006790 2.1e-292 1009.2 985 58.0
Haze_11418 Corylus avellana HOM05D005408 ORTHO05D006790 1.2e-290 1003.4 996 56.9
CiPaw.02G109300 Carya illinoinensis HOM05D005408 ORTHO05D006790 4.5e-290 1001.5 988 57.5
Hma1.2p1_0112F.1_g054305 Hydrangea macrophylla HOM05D005408 ORTHO05D006790 9.9e-290 1000.3 714 71.8
MD16G1222000 Malus domestica HOM05D005408 ORTHO05D006790 2.2e-289 999.2 999 58.4
Cfa014743 Carpinus fangiana HOM05D005408 ORTHO05D006790 8.4e-289 997.3 993 57.0
QL06p019224 Quercus lobata HOM05D005408 ORTHO05D006790 2.7e-287 992.3 988 58.4
Nn1g02867 Nelumbo nucifera HOM05D005408 ORTHO05D006790 7.9e-287 990.7 1045 54.8
Sopen09g033240 Solanum pennellii HOM05D005408 ORTHO05D006790 1.3e-286 989.9 1037 54.9
TWI09G0385 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 1.3e-284 983.4 974 58.6
COL.COLO4_15917 Corchorus olitorius HOM05D005408 ORTHO05D006790 1.6e-284 983.0 938 59.0
Solyc09g090340.3 Solanum lycopersicum HOM05D005408 ORTHO05D006790 1.6e-284 983.0 1032 55.1
Potri.010G069200 Populus trichocarpa HOM05D005408 ORTHO05D006790 1.1e-283 980.3 992 57.3
PGSC0003DMG400017212 Solanum tuberosum HOM05D005408 ORTHO05D006790 2.4e-283 979.2 1036 54.3
MD13G1216600 Malus domestica HOM05D005408 ORTHO05D006790 5.3e-283 978.0 999 57.0
Ciclev10004264m.g Citrus clementina HOM05D005408 ORTHO05D006790 1.2e-282 976.9 990 56.5
Atru.chr4.2004 Acer truncatum HOM05D005408 ORTHO05D006790 7.6e-282 974.2 980 57.4
TWI53G1583 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 7.6e-282 974.2 988 56.5
Gohir.D02G046500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 1.6e-279 966.5 983 56.1
Gohir.A02G040500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 2.7e-279 965.7 983 56.1
CAN.G220.39 Capsicum annuum HOM05D005408 ORTHO05D006790 1.9e-277 959.5 1017 54.7
Manes.15G043200 Manihot esculenta HOM05D005408 ORTHO05D006790 3.1e-275 952.2 989 55.6
Potri.008G169200 Populus trichocarpa HOM05D005408 ORTHO05D006790 1.3e-273 946.8 988 55.8
RcHm_v2.0_Chr4g0394291 Rosa chinensis HOM05D005408 ORTHO05D006790 2.2e-273 946.0 996 55.2
Manes.15G043300 Manihot esculenta HOM05D005408 ORTHO05D006790 5.0e-273 944.9 995 55.5
Cpa.g.sc44.32 Carica papaya HOM05D005408 ORTHO05D006790 5.5e-272 941.4 986 55.2
Peaxi162Scf00392g00730 Petunia axillaris HOM05D005408 ORTHO05D006790 5.5e-272 941.4 1026 53.2
Cc03_g05790 Coffea canephora HOM05D005408 ORTHO05D006790 3.9e-270 935.3 1041 54.5
Nitab4.5_0000596g0060 Nicotiana tabacum HOM05D005408 ORTHO05D006790 8.7e-270 934.1 1095 50.7
Sabra10G0037900 Salix brachista HOM05D005408 ORTHO05D006790 5.7e-269 931.4 988 55.2
FAN17G2537 Fragaria x ananassa HOM05D005408 ORTHO05D006790 1.3e-268 930.2 999 54.9
ClCG05G004200 Citrullus lanatus HOM05D005408 ORTHO05D006790 8.2e-268 927.5 995 53.5
FvH4_4g04020 Fragaria vesca HOM05D005408 ORTHO05D006790 6.9e-267 924.5 998 54.4
FAN12G0827 Fragaria x ananassa HOM05D005408 ORTHO05D006790 6.9e-267 924.5 1003 54.5
EL10Ac3g04981 Beta vulgaris HOM05D005408 ORTHO05D006790 2.6e-266 922.5 993 54.4
Eucgr.H03018 Eucalyptus grandis HOM05D005408 ORTHO05D006790 4.5e-266 921.8 990 54.1
CiPaw.01G181400 Carya illinoinensis HOM05D005408 ORTHO05D006790 7.7e-266 921.0 991 54.5
Sabra08G0129000 Salix brachista HOM05D005408 ORTHO05D006790 1.3e-265 920.2 1009 55.3
Sc19g0003230 Simmondsia chinensis HOM05D005408 ORTHO05D006790 1.3e-265 920.2 991 54.4
Oeu002940.1 Olea europaea HOM05D005408 ORTHO05D006790 3.2e-264 915.6 983 54.5
Nitab4.5_0000044g0530 Nicotiana tabacum HOM05D005408 ORTHO05D006790 4.2e-264 915.2 1039 52.0
Gorai.005G051300 Gossypium raimondii HOM05D005408 ORTHO05D006790 7.2e-264 914.4 928 56.1
MELO3C006406.2 Cucumis melo HOM05D005408 ORTHO05D006790 7.9e-263 911.0 1004 52.9
CsaV3_3G011930 Cucumis sativus L. HOM05D005408 ORTHO05D006790 1.4e-262 910.2 1008 52.7
CANSAT54G2691 Cannabis sativa HOM05D005408 ORTHO05D006790 3.3e-261 905.6 995 53.6
Aqoxy5G00183 Aquilegia oxysepala HOM05D005408 ORTHO05D006790 6.3e-260 901.4 1014 53.1
MBI07_g31083_MAGBIO Magnolia biondii HOM05D005408 ORTHO05D006790 2.0e-258 896.3 995 52.9
MSTRG.21921 Avicennia marina HOM05D005408 ORTHO05D006790 1.7e-257 893.3 992 52.8
AUR62015544 Chenopodium quinoa HOM05D005408 ORTHO05D006790 1.9e-256 889.8 995 52.8
FAN22G0039 Fragaria x ananassa HOM05D005408 ORTHO05D006790 1.4e-254 883.6 1041 51.6
HanXRQChr11g0330791 Helianthus annuus HOM05D005408 ORTHO05D006790 9.7e-253 877.5 1006 52.5
Hund03055 Selenicereus undatus HOM05D005408 ORTHO05D006790 2.4e-251 872.8 998 50.2
AUR62002164 Chenopodium quinoa HOM05D005408 ORTHO05D006790 1.0e-249 867.5 979 52.5
PGR004G2334 Punica granatum HOM05D005408 ORTHO05D006790 1.6e-247 860.1 995 52.2
Oeu005084.1 Olea europaea HOM05D005408 ORTHO05D006790 3.6e-247 859.0 985 51.4
PSO832G1937 Papaver somniferum HOM05D005408 ORTHO05D006790 8.0e-247 857.8 999 51.1
Aa31LG9G3050 Aethionema arabicum HOM05D005408 ORTHO05D006790 1.4e-246 857.1 987 51.1
SalBow3G0714 Salvia bowleyana HOM05D005408 ORTHO05D006790 4.0e-246 855.5 1001 51.0
AT4G14310 Arabidopsis thaliana HOM05D005408 ORTHO05D006790 5.2e-246 855.1 992 51.3
Sed0026902 Sechium edule HOM05D005408 ORTHO05D006790 1.5e-245 853.6 991 51.2
CARHR220500 Cardamine hirsuta HOM05D005408 ORTHO05D006790 5.7e-245 851.7 994 50.6
THA.LOC104804761 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 7.5e-245 851.3 989 51.1
Carub.0007s2798 Capsella rubella HOM05D005408 ORTHO05D006790 1.4e-243 847.0 991 51.0
THA.LOC104822240 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 2.4e-243 846.3 1002 51.2
ECA248G0134 Erigeron canadensis HOM05D005408 ORTHO05D006790 4.1e-243 845.5 972 51.9
Migut.N00286 Erythranthe guttata HOM05D005408 ORTHO05D006790 1.0e-241 840.9 998 51.4
PSO210G0343 Papaver somniferum HOM05D005408 ORTHO05D006790 1.7e-241 840.1 963 52.5
arahy.Tifrunner.gnm1.ann1.NA4LRU Arachis hypogaea HOM05D005408 ORTHO05D006790 2.9e-241 839.3 940 50.2
arahy.Tifrunner.gnm1.ann1.HQEG75 Arachis hypogaea HOM05D005408 ORTHO05D006790 3.8e-241 839.0 943 50.7
Sp7g12340 Schrenkiella parvula HOM05D005408 ORTHO05D006790 2.5e-240 836.3 992 50.4
AL7G41950 Arabidopsis lyrata HOM05D005408 ORTHO05D006790 3.2e-240 835.9 992 49.9
Thhalv10024359m.g Eutrema salsugineum HOM05D005408 ORTHO05D006790 5.2e-238 828.6 987 49.6
Lalb_Chr03g0037341 Lupinus albus HOM05D005408 ORTHO05D006790 6.8e-238 828.2 1001 51.2
Lj6g0021221 Lotus japonicus HOM05D005408 ORTHO05D006790 4.8e-236 822.0 683 62.4
Glyma.02G003800 Glycine max HOM05D005408 ORTHO05D006790 5.0e-233 812.0 669 62.0
VMungo0720G1073 Vigna mungo HOM05D005408 ORTHO05D006790 2.8e-231 806.2 766 56.9
Glyma.10G004700 Glycine max HOM05D005408 ORTHO05D006790 8.0e-231 804.7 667 62.2
Lsat_1_v5_gn_1_74661 Lactuca sativa HOM05D005408 ORTHO05D006790 1.4e-230 803.9 1004 49.8
C03p76860 Brassica napus HOM05D005408 ORTHO05D006790 2.2e-228 796.6 984 48.4
SGA_v2.0_scaffold43G16217 Striga asiatica HOM05D005408 ORTHO05D006790 2.2e-228 796.6 1017 48.8
Phvul.007G275400 Phaseolus vulgaris HOM05D005408 ORTHO05D006790 2.8e-228 796.2 667 61.6
BcaNung06103 Brassica carinata HOM05D005408 ORTHO05D006790 2.7e-226 789.6 983 49.0
BcaC01g00205 Brassica carinata HOM05D005408 ORTHO05D006790 1.0e-225 787.7 984 48.2
Medtr1g041685 Medicago truncatula HOM05D005408 ORTHO05D006790 2.1e-223 780.0 686 59.9
TPR.G25189 Trifolium pratense HOM05D005408 ORTHO05D006790 2.1e-223 780.0 673 60.6
A08p24350 Brassica napus HOM05D005408 ORTHO05D006790 6.8e-222 775.0 984 48.1
BolC3t19941H Brassica oleracea HOM05D005408 ORTHO05D006790 2.0e-221 773.5 1003 47.1
BraA08t34390Z Brassica rapa HOM05D005408 ORTHO05D006790 1.8e-219 766.9 1009 47.0
HanXRQChr01g0023201 Helianthus annuus HOM05D005408 ORTHO05D006790 5.4e-219 765.4 987 48.7
Psat6g104520 Pisum sativum HOM05D005408 ORTHO05D006790 2.0e-218 763.5 868 50.6
Ca_03010_v3 Cicer arietinum L. HOM05D005408 ORTHO05D006790 1.7e-217 760.4 683 59.7
Migut.G00502 Erythranthe guttata HOM05D005408 ORTHO05D006790 2.0e-213 746.9 984 47.7
MSTRG.4147 Avicennia marina HOM05D005408 ORTHO05D006790 9.8e-213 744.6 670 58.4
SGA_v2.0_scaffold101G29731 Striga asiatica HOM05D005408 ORTHO05D006790 1.9e-211 740.3 990 46.5
ATR0736G089 Amborella trichopoda HOM05D005408 ORTHO05D006790 7.3e-208 728.4 741 53.3
Zm00001eb258510 Zea mays HOM05D005408 ORTHO05D006790 1.1e-195 688.0 727 51.3
Zm00001eb191660 Zea mays HOM05D005408 ORTHO05D006790 9.2e-195 684.9 801 48.9
CDE07G1006 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 2.9e-188 663.3 1009 43.1
CDE04G2551 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 4.5e-181 639.4 1036 41.0
SEGI_14734 Sequoiadendron giganteum HOM05D005408 ORTHO05D006790 5.8e-165 585.9 697 46.2
unitig_736.g22443 Utricularia gibba HOM05D005408 ORTHO05D006790 4.3e-160 569.7 901 41.8
HPP92_008326 Vanilla planifolia HOM05D005408 ORTHO05D006790 1.9e-155 554.3 972 39.4
Ah.13g072600 Amaranthus hybridus HOM05D005408 ORTHO05D006790 9.7e-144 515.4 749 46.1
TPR.G25191 Trifolium pratense HOM05D005408 ORTHO05D006790 3.5e-133 480.3 667 43.5
Os02g0809900 Oryza sativa ssp. japonica HOM05D005408 ORTHO05D006790 9.8e-104 382.5 305 59.7
Mapoly0063s0094 Marchantia polymorpha HOM05D005408 ORTHO05D006790 1.7e-103 381.7 555 37.3
Pp3c16_10130 Physcomitrium patens HOM05D005408 ORTHO05D006790 7.0e-102 376.3 477 40.9
Pp3c25_7300 Physcomitrium patens HOM05D005408 ORTHO05D006790 2.5e-99 367.9 914 32.4
AagrBONN_evm.TU.Sc2ySwM_228.3605 Anthoceros agrestis HOM05D005408 ORTHO05D006790 5.1e-92 343.6 456 40.6
SalBow8G3468 Salvia bowleyana HOM05D005408 ORTHO05D006790 1.2e-40 172.9 115 70.4
SalBow7G4774 Salvia bowleyana HOM05D005408 ORTHO05D006790 1.7e-39 169.1 115 70.4
CBR_g30942 Chara braunii HOM05D005408 ORTHO05D006790 3.6e-29 134.8 368 28.3
CiPaw.06G041800 Carya illinoinensis HOM05D005408 ORTHO05D006790 6.1e-29 134.0 360 36.7
Rhsim02G0041700 Rhododendron simsii HOM05D005408 ORTHO05D006790 1.4e-28 132.9 189 45.5
Hund11908 Selenicereus undatus HOM05D005408 ORTHO05D006790 6.5e-23 114.0 146 46.6
BolC4t25724H Brassica oleracea HOM05D005408 ORTHO05D006790 3.5e-16 91.7 137 42.3
C04p41430 Brassica napus HOM05D005408 ORTHO05D006790 4.5e-16 91.3 137 42.3
BolC4t25725H Brassica oleracea HOM05D005408 ORTHO05D006790 6.1e-13 80.9 106 45.3
A04p07780 Brassica napus HOM05D005408 ORTHO05D006790 1.4e-12 79.7 80 55.0
C04p41440 Brassica napus HOM05D005408 ORTHO05D006790 2.6e-11 75.5 106 44.3
BcaC02g09333 Brassica carinata HOM05D005408 ORTHO05D006790 5.4e-09 67.8 75 50.7


User provided reference genes

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