Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047980 Camellia sinensis var. sinensis HOM05D002804 ORTHO05D003755 4.0e-99 365.5 317 100.0
CSS0012453 Camellia sinensis var. sinensis HOM05D002804 ORTHO05D003755 2.0e-82 310.1 321 92.2
Actinidia17724 Actinidia chinensis HOM05D002804 ORTHO05D003755 8.2e-36 155.2 315 61.3
Rhsim11G0111400 Rhododendron simsii HOM05D002962 ORTHO05D003280 9.4e-32 141.7 251 58.6
Lj5A312T57 Lonicera japonica HOM05D002804 ORTHO05D003755 1.2e-31 141.4 298 44.0
Sopen01g044910 Solanum pennellii HOM05D002804 ORTHO05D003755 3.6e-31 139.8 300 39.0
MD04G1183300 Malus domestica HOM05D002804 ORTHO05D003755 6.1e-31 139.0 241 61.8
Nitab4.5_0004889g0010 Nicotiana tabacum HOM05D002804 ORTHO05D003755 1.0e-30 138.3 326 38.0
Nitab4.5_0004090g0070 Nicotiana tabacum HOM05D002804 ORTHO05D003755 2.3e-30 137.1 242 45.9
MSTRG.5178 Avicennia marina HOM05D002804 ORTHO05D003755 6.8e-30 135.6 292 44.2
Dinv30965 Davidia involucrata HOM05D002804 ORTHO05D003755 2.6e-29 133.7 214 47.7
Peaxi162Scf00194g00635 Petunia axillaris HOM05D002804 ORTHO05D003755 5.7e-29 132.5 209 43.1
Solyc01g102470.2 Solanum lycopersicum HOM05D002804 ORTHO05D003755 9.8e-29 131.7 296 38.5
PGSC0003DMG400018230 Solanum tuberosum HOM05D002804 ORTHO05D003755 1.7e-28 131.0 325 43.7
CAN.G1379.37 Capsicum annuum HOM05D002804 ORTHO05D003755 2.8e-28 130.2 327 48.3
Cpa.g.sc14.234 Carica papaya HOM05D002804 ORTHO05D003755 3.7e-28 129.8 327 41.3
Prupe.6G301800 Prunus persica HOM05D002804 ORTHO05D003755 8.3e-28 128.6 211 66.4
Cc02_g36880 Coffea canephora HOM05D002804 ORTHO05D003755 1.1e-27 128.3 328 48.8
PGR119G1767 Punica granatum HOM05D002804 ORTHO05D003755 2.4e-27 127.1 326 47.5
FvH4_6g08960 Fragaria vesca HOM05D002804 ORTHO05D003755 1.2e-26 124.8 250 46.0
RcHm_v2.0_Chr3g0459231 Rosa chinensis HOM05D002804 ORTHO05D003755 1.2e-26 124.8 244 36.9
Oeu029180.1 Olea europaea HOM05D002804 ORTHO05D003755 4.5e-26 122.9 199 51.8
Migut.N00995 Erythranthe guttata HOM05D002804 ORTHO05D003755 7.7e-26 122.1 197 51.8
Peaxi162Scf00194g00625 Petunia axillaris HOM05D002804 ORTHO05D003755 7.7e-26 122.1 250 42.4
QL03p011442 Quercus lobata HOM05D002804 ORTHO05D003755 7.7e-26 122.1 210 53.8
FAN05G1021 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.7e-25 120.9 204 50.5
Eucgr.B01359 Eucalyptus grandis HOM05D002804 ORTHO05D003755 2.9e-25 120.2 323 48.0
Thecc.08G200300 Theobroma cacao HOM05D002804 ORTHO05D003755 5.0e-25 119.4 202 49.5
TPR.G3051 Trifolium pratense HOM05D002804 ORTHO05D003755 1.5e-24 117.9 243 44.0
Duzib116G0715 Durio zibethinus HOM05D002804 ORTHO05D003755 1.9e-24 117.5 174 54.6
Lalb_Chr02g0147321 Lupinus albus HOM05D002804 ORTHO05D003755 1.9e-24 117.5 324 40.7
unitig_22.g5757 Utricularia gibba HOM05D002804 ORTHO05D003755 4.2e-24 116.3 207 45.4
Lsat_1_v5_gn_9_84161 Lactuca sativa HOM05D002804 ORTHO05D003755 4.7e-23 112.8 317 46.7
Gohir.D09G113800 Gossypium hirsutum HOM05D002804 ORTHO05D003755 8.0e-23 112.1 197 48.7
Gorai.006G131500 Gossypium raimondii HOM05D002804 ORTHO05D003755 1.0e-22 111.7 197 48.7
ATR0693G165 Amborella trichopoda HOM05D002804 ORTHO05D003755 1.8e-22 110.9 92 56.5
FAN14G2492 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.8e-22 110.9 176 41.5
Lj5A49T37 Lonicera japonica HOM05D002804 ORTHO05D003755 1.8e-22 110.9 198 53.0
TAR636G2693 Trochodendron aralioides HOM05D002804 ORTHO05D003755 3.0e-22 110.2 177 46.9
Gohir.A09G116900 Gossypium hirsutum HOM05D002804 ORTHO05D003755 4.0e-22 109.8 311 39.5
Manes.04G038100 Manihot esculenta HOM05D002804 ORTHO05D003755 5.2e-22 109.4 91 59.3
FAN02G1170 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.2e-21 108.2 212 51.9
HanXRQChr07g0193711 Helianthus annuus HOM05D002804 ORTHO05D003755 1.2e-21 108.2 240 58.3
Aa31LG1G21630 Aethionema arabicum HOM05D007539 ORTHO05D009315 1.5e-21 107.8 233 45.1
SalBow4G0464 Salvia bowleyana HOM05D002804 ORTHO05D003755 1.5e-21 107.8 157 54.8
Medtr1g085280 Medicago truncatula HOM05D002804 ORTHO05D003755 3.4e-21 106.7 233 42.9
Nn5g27913 Nelumbo nucifera HOM05D002804 ORTHO05D003755 3.4e-21 106.7 209 56.5
PSO170G1624 Papaver somniferum HOM05D002804 ORTHO05D003755 7.5e-21 105.5 88 60.2
PSO357G0404 Papaver somniferum HOM05D002804 ORTHO05D003755 7.5e-21 105.5 88 60.2
Atru.chr12.1496 Acer truncatum HOM05D002804 ORTHO05D003755 9.8e-21 105.1 138 54.3
THA.LOC104826924 Tarenaya hassleriana HOM05D002804 ORTHO05D003755 1.3e-20 104.8 205 65.4
AT5G03560 Arabidopsis thaliana HOM05D002804 ORTHO05D003755 2.2e-20 104.0 200 53.5
Sed0019381 Sechium edule HOM05D002804 ORTHO05D003755 2.2e-20 104.0 247 49.0
SGA_v2.0_scaffold658G53387 Striga asiatica HOM05D002804 ORTHO05D003755 2.2e-20 104.0 168 53.6
ECA236G4290 Erigeron canadensis HOM05D002804 ORTHO05D003755 3.7e-20 103.2 306 44.4
Ah.02g130510 Amaranthus hybridus HOM05D002804 ORTHO05D003755 4.9e-20 102.8 185 51.9
Carub.0006s0240 Capsella rubella HOM05D002804 ORTHO05D003755 1.4e-19 101.3 260 51.2
HPP92_022010 Vanilla planifolia HOM05D002804 ORTHO05D003755 1.4e-19 101.3 85 81.2
Sc14g0008950 Simmondsia chinensis HOM05D002804 ORTHO05D003755 1.8e-19 100.9 240 40.0
AL6G13060 Arabidopsis lyrata HOM05D002804 ORTHO05D003755 3.1e-19 100.1 141 44.0
VMungo0720G2485 Vigna mungo HOM05D002804 ORTHO05D003755 3.1e-19 100.1 205 40.5
Lj5g0005878 Lotus japonicus HOM05D002804 ORTHO05D003755 4.1e-19 99.8 322 41.3
Phvul.007G207300 Phaseolus vulgaris HOM05D002804 ORTHO05D003755 7.0e-19 99.0 260 43.8
EL10Ac6g13418 Beta vulgaris HOM05D002804 ORTHO05D003755 7.8e-18 95.5 191 51.3
Os06g0308200 Oryza sativa ssp. japonica HOM05D002804 ORTHO05D003755 3.8e-17 93.2 97 51.5
Glyma.20G089500 Glycine max HOM05D002804 ORTHO05D003755 2.5e-16 90.5 161 38.5
Zm00001eb429950 Zea mays HOM05D002804 ORTHO05D003755 1.6e-15 87.8 124 55.6
CiPaw.04G013600 Carya illinoinensis HOM05D002804 ORTHO05D003755 2.8e-15 87.0 134 47.8
Sabra13G0000100 Salix brachista HOM05D002804 ORTHO05D003755 3.6e-15 86.7 116 44.0
SEGI_29468 Sequoiadendron giganteum HOM05D002804 ORTHO05D003755 2.6e-13 80.5 93 60.2
Psat6g157320 Pisum sativum HOM05D002804 ORTHO05D003755 1.2e-10 71.6 174 42.5
MD12G1196700 Malus domestica HOM05D002804 ORTHO05D003755 2.7e-10 70.5 174 61.5
AUR62005554 Chenopodium quinoa HOM05D002804 ORTHO05D003755 4.6e-10 69.7 139 51.1
Ca_10220_v3 Cicer arietinum L. HOM05D002804 ORTHO05D003755 1.9e-08 64.3 174 40.8
DCAR_003256 Daucus carota HOM05D002804 ORTHO05D003755 6.2e-07 59.3 181 29.8
RcHm_v2.0_Chr3g0459171 Rosa chinensis HOM05D002804 ORTHO05D003755 6.2e-07 59.3 216 31.5
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 6.8e-06 55.8 114 30.7
RcHm_v2.0_Chr3g0459161 Rosa chinensis HOM05D002804 ORTHO05D003755 8.9e-06 55.5 208 25.0


User provided reference genes

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