Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047955 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 1.9e-96 355.9 194 100.0
CSS0027180 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 5.9e-85 317.8 184 90.8
Dinv44270 Davidia involucrata HOM05D004325 ORTHO05D005470 3.8e-84 315.1 192 85.4
Hma1.2p1_0013F.1_g008360 Hydrangea macrophylla HOM05D004325 ORTHO05D005470 1.1e-83 313.5 192 84.4
Actinidia13352 Actinidia chinensis HOM05D004325 ORTHO05D005470 4.2e-83 311.6 182 87.9
Cc03_g00680 Coffea canephora HOM05D004325 ORTHO05D005470 6.1e-82 307.8 192 83.9
Rhsim02G0002800 Rhododendron simsii HOM05D004325 ORTHO05D005470 1.4e-81 306.6 182 87.4
Eucgr.E02007 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.0e-81 305.4 180 87.8
Atru.chr4.3046 Acer truncatum HOM05D004325 ORTHO05D005470 3.9e-81 305.1 178 86.5
COL.COLO4_34588 Corchorus olitorius HOM05D004325 ORTHO05D005470 5.1e-81 304.7 182 85.7
ECA233G2476 Erigeron canadensis HOM05D004325 ORTHO05D005470 6.7e-81 304.3 193 80.3
TAR362G0217 Trochodendron aralioides HOM05D004325 ORTHO05D005470 6.7e-81 304.3 178 87.1
Gohir.A01G034900 Gossypium hirsutum HOM05D004325 ORTHO05D005470 1.5e-80 303.1 193 79.3
Thecc.04G303800 Theobroma cacao HOM05D004325 ORTHO05D005470 1.5e-80 303.1 180 86.7
Duzib151G0878 Durio zibethinus HOM05D004325 ORTHO05D005470 2.6e-80 302.4 174 87.4
Peaxi162Scf00228g00059 Petunia axillaris HOM05D004325 ORTHO05D005470 2.6e-80 302.4 188 80.9
Cpa.g.sc9.38 Carica papaya HOM05D004325 ORTHO05D005470 3.3e-80 302.0 173 87.9
Duzib052G1161 Durio zibethinus HOM05D004325 ORTHO05D005470 3.3e-80 302.0 181 86.2
Lalb_Chr12g0200831 Lupinus albus HOM05D004325 ORTHO05D005470 1.3e-79 300.1 187 83.4
Cfa015290 Carpinus fangiana HOM05D004325 ORTHO05D005470 1.7e-79 299.7 183 85.2
Haze_01324 Corylus avellana HOM05D004325 ORTHO05D005470 1.7e-79 299.7 178 85.4
Prupe.1G115000 Prunus persica HOM05D004325 ORTHO05D005470 1.7e-79 299.7 180 86.1
CANSAT78G0850 Cannabis sativa HOM05D004325 ORTHO05D005470 2.2e-79 299.3 186 82.3
Migut.N00036 Erythranthe guttata HOM05D004325 ORTHO05D005470 2.8e-79 298.9 178 84.3
Gohir.D01G023556 Gossypium hirsutum HOM05D004325 ORTHO05D005470 3.7e-79 298.5 193 78.8
Gorai.002G030800 Gossypium raimondii HOM05D004325 ORTHO05D005470 3.7e-79 298.5 193 78.8
arahy.Tifrunner.gnm1.ann1.NK7FC1 Arachis hypogaea HOM05D004325 ORTHO05D005470 4.8e-79 298.1 181 84.0
MD16G1151300 Malus domestica HOM05D004325 ORTHO05D005470 6.3e-79 297.7 192 80.7
arahy.Tifrunner.gnm1.ann1.H88EK8 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.1e-78 297.0 181 84.0
arahy.Tifrunner.gnm1.ann1.RG9184 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.1e-78 297.0 181 84.0
Ciclev10005911m.g Citrus clementina HOM05D004325 ORTHO05D005470 1.1e-78 297.0 178 84.8
MD13G1150800 Malus domestica HOM05D004325 ORTHO05D005470 1.4e-78 296.6 192 80.2
MBI19_g03261_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 2.4e-78 295.8 180 84.4
TAR633G1272 Trochodendron aralioides HOM05D004325 ORTHO05D005470 4.1e-78 295.0 178 84.3
Lj6g0013793 Lotus japonicus HOM05D004325 ORTHO05D005470 7.0e-78 294.3 187 80.7
Eucgr.D01575 Eucalyptus grandis HOM05D004325 ORTHO05D005470 9.1e-78 293.9 180 85.0
Solyc05g053390.4 Solanum lycopersicum HOM05D004325 ORTHO05D005470 9.1e-78 293.9 194 78.4
Sopen05g031900 Solanum pennellii HOM05D004325 ORTHO05D005470 1.2e-77 293.5 180 82.2
THA.LOC104827099 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 1.2e-77 293.5 188 83.0
CARHR287830 Cardamine hirsuta HOM05D004325 ORTHO05D005470 1.6e-77 293.1 184 80.4
HanXRQChr17g0569361 Helianthus annuus HOM05D004325 ORTHO05D005470 3.5e-77 292.0 180 81.7
MSTRG.24825 Avicennia marina HOM05D004325 ORTHO05D005470 4.5e-77 291.6 174 85.1
Medtr2g033830 Medicago truncatula HOM05D004325 ORTHO05D005470 4.5e-77 291.6 178 83.7
PGSC0003DMG400027209 Solanum tuberosum HOM05D004325 ORTHO05D005470 4.5e-77 291.6 182 81.3
Thhalv10004957m.g Eutrema salsugineum HOM05D004325 ORTHO05D005470 5.9e-77 291.2 196 78.1
Glyma.15G139100 Glycine max HOM05D004325 ORTHO05D005470 5.9e-77 291.2 177 83.6
Manes.03G206300 Manihot esculenta HOM05D004325 ORTHO05D005470 5.9e-77 291.2 173 85.0
Potri.008G103400 Populus trichocarpa HOM05D004325 ORTHO05D005470 5.9e-77 291.2 181 84.0
VMungo0540G0568 Vigna mungo HOM05D004325 ORTHO05D005470 5.9e-77 291.2 177 83.6
AL8G23260 Arabidopsis lyrata HOM05D004325 ORTHO05D005470 1.0e-76 290.4 196 77.0
Ca_00969_v3 Cicer arietinum L. HOM05D004325 ORTHO05D005470 1.0e-76 290.4 177 83.1
Nitab4.5_0000177g0050 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.0e-76 290.4 196 77.0
RcHm_v2.0_Chr4g0425791 Rosa chinensis HOM05D004325 ORTHO05D005470 1.0e-76 290.4 181 81.8
SGA_v2.0_scaffold528G52737 Striga asiatica HOM05D004325 ORTHO05D005470 1.0e-76 290.4 205 75.1
Aa31LG11G8140 Aethionema arabicum HOM05D004325 ORTHO05D005470 1.3e-76 290.0 196 78.1
AT5G49510 Arabidopsis thaliana HOM05D004325 ORTHO05D005470 1.3e-76 290.0 186 79.0
Carub.0008s0936 Capsella rubella HOM05D004325 ORTHO05D005470 1.3e-76 290.0 196 77.0
Glyma.09G034400 Glycine max HOM05D004325 ORTHO05D005470 2.9e-76 288.9 177 82.5
Lsat_1_v5_gn_1_117981 Lactuca sativa HOM05D004325 ORTHO05D005470 2.9e-76 288.9 191 78.0
Nitab4.5_0004165g0020 Nicotiana tabacum HOM05D004325 ORTHO05D005470 2.9e-76 288.9 180 80.0
TPR.G30807 Trifolium pratense HOM05D004325 ORTHO05D005470 2.9e-76 288.9 177 83.1
vmacro15176 Vaccinium macrocarpon HOM05D004325 ORTHO05D005470 2.9e-76 288.9 224 71.9
Psat1g162400 Pisum sativum HOM05D004325 ORTHO05D005470 3.8e-76 288.5 177 83.1
Sabra08G0078100 Salix brachista HOM05D004325 ORTHO05D005470 3.8e-76 288.5 178 82.0
PGR004G2019 Punica granatum HOM05D004325 ORTHO05D005470 5.0e-76 288.1 193 78.2
Sc25g0003210 Simmondsia chinensis HOM05D004325 ORTHO05D005470 5.0e-76 288.1 184 79.9
Nitab4.5_0000891g0010 Nicotiana tabacum HOM05D004325 ORTHO05D005470 6.5e-76 287.7 196 76.5
Potri.010G147600 Populus trichocarpa HOM05D004325 ORTHO05D005470 6.5e-76 287.7 181 84.0
Nitab4.5_0000647g0250 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.5e-75 286.6 180 79.4
PSO421G0271 Papaver somniferum HOM05D004325 ORTHO05D005470 1.5e-75 286.6 184 79.9
PSO832G3679 Papaver somniferum HOM05D004325 ORTHO05D005470 1.5e-75 286.6 184 80.4
Sed0024233 Sechium edule HOM05D004325 ORTHO05D005470 1.9e-75 286.2 185 80.5
Sp2g19810 Schrenkiella parvula HOM05D004325 ORTHO05D005470 2.5e-75 285.8 186 78.5
SpUn0021_0040 Schrenkiella parvula HOM05D004325 ORTHO05D005470 2.5e-75 285.8 186 78.5
Os12g0562900 Oryza sativa ssp. japonica HOM05D004325 ORTHO05D005470 3.2e-75 285.4 173 82.7
TWI73G0086 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 3.2e-75 285.4 176 81.8
FvH4_4g20250 Fragaria vesca HOM05D004325 ORTHO05D005470 5.5e-75 284.6 174 81.6
AUR62039261 Chenopodium quinoa HOM05D004325 ORTHO05D005470 7.2e-75 284.3 185 79.5
Phvul.006G119000 Phaseolus vulgaris HOM05D004325 ORTHO05D005470 9.4e-75 283.9 171 83.0
AUR62016229 Chenopodium quinoa HOM05D004325 ORTHO05D005470 1.6e-74 283.1 185 78.9
BcaB04g19615 Brassica carinata HOM05D004325 ORTHO05D005470 2.1e-74 282.7 185 78.9
unitig_0.g2580 Utricularia gibba HOM05D004325 ORTHO05D005470 2.1e-74 282.7 175 79.4
BraA09t36122Z Brassica rapa HOM05D004325 ORTHO05D005470 3.6e-74 282.0 174 81.0
PSO063G1209 Papaver somniferum HOM05D004325 ORTHO05D005470 4.7e-74 281.6 184 78.8
BcaC04g23736 Brassica carinata HOM05D004325 ORTHO05D005470 6.1e-74 281.2 174 81.0
C09p05230 Brassica napus HOM05D004325 ORTHO05D005470 6.1e-74 281.2 174 81.0
Sed0016650 Sechium edule HOM05D004325 ORTHO05D005470 6.1e-74 281.2 176 80.7
A09p04850 Brassica napus HOM05D004325 ORTHO05D005470 1.4e-73 280.0 174 81.0
ClCG05G006650 Citrullus lanatus HOM05D004325 ORTHO05D005470 1.4e-73 280.0 190 76.8
Zm00001eb136920 Zea mays HOM05D004325 ORTHO05D005470 2.3e-73 279.3 173 80.3
PSO724G0368 Papaver somniferum HOM05D004325 ORTHO05D005470 3.0e-73 278.9 184 78.3
Hund11985 Selenicereus undatus HOM05D004325 ORTHO05D005470 5.2e-73 278.1 178 78.7
Ah.13g071390 Amaranthus hybridus HOM05D004325 ORTHO05D005470 8.8e-73 277.3 180 80.6
A06p38330 Brassica napus HOM05D004325 ORTHO05D005470 8.8e-73 277.3 186 76.3
C07p39920 Brassica napus HOM05D004325 ORTHO05D005470 8.8e-73 277.3 186 76.3
BolC7t44524H Brassica oleracea HOM05D004325 ORTHO05D005470 8.8e-73 277.3 186 76.3
BraA06t26747Z Brassica rapa HOM05D004325 ORTHO05D005470 8.8e-73 277.3 186 76.3
Hund03133 Selenicereus undatus HOM05D004325 ORTHO05D005470 8.8e-73 277.3 170 82.4
THA.LOC104802708 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 8.8e-73 277.3 193 75.6
Zm00001eb028520 Zea mays HOM05D004325 ORTHO05D005470 1.1e-72 276.9 184 76.1
CsaV3_3G015280 Cucumis sativus L. HOM05D004325 ORTHO05D005470 1.5e-72 276.6 178 79.8
ATR0693G272 Amborella trichopoda HOM05D004325 ORTHO05D005470 2.0e-72 276.2 175 78.3
HPP92_027563 Vanilla planifolia HOM05D004325 ORTHO05D005470 2.6e-72 275.8 196 72.4
CDE01G0033 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 7.5e-72 274.2 182 76.4
Lj3A833G34 Lonicera japonica HOM05D004325 ORTHO05D005470 3.7e-71 271.9 154 90.3
FAN12G3971 Fragaria x ananassa HOM05D004325 ORTHO05D005470 7.0e-70 267.7 207 68.6
Sabra10G0113800 Salix brachista HOM05D004325 ORTHO05D005470 3.5e-69 265.4 225 67.1
Aqoxy3G01635 Aquilegia oxysepala HOM05D004325 ORTHO05D005470 5.9e-69 264.6 173 79.2
FAN07G0536 Fragaria x ananassa HOM05D004325 ORTHO05D005470 1.0e-68 263.8 216 65.7
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 8.5e-68 260.8 156 85.9
TWI09G1034 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 7.2e-67 257.7 181 76.8
BolC9t53449H Brassica oleracea HOM05D004325 ORTHO05D005470 1.0e-65 253.8 234 60.3
Nn3g21742 Nelumbo nucifera HOM05D004325 ORTHO05D005470 3.0e-65 252.3 184 74.5
EL10Ac3g05527 Beta vulgaris HOM05D004325 ORTHO05D005470 4.8e-63 245.0 156 80.8
Eucgr.E01999 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.4e-62 243.4 180 74.4
GSVIVG01034969001 Vitis vinifera HOM05D004325 ORTHO05D005470 2.7e-61 239.2 135 89.6
SEGI_09014 Sequoiadendron giganteum HOM05D004325 ORTHO05D005470 1.3e-60 236.9 171 69.0
Mapoly0057s0039 Marchantia polymorpha HOM05D004325 ORTHO05D005470 5.0e-60 235.0 171 66.7
CAN.G945.3 Capsicum annuum HOM05D004325 ORTHO05D005470 8.5e-60 234.2 144 81.2
CiPaw.01G136700 Carya illinoinensis HOM05D004325 ORTHO05D005470 5.5e-59 231.5 135 87.4
SMO116G0307 Selaginella moellendorffii HOM05D004325 ORTHO05D005470 1.8e-57 226.5 168 66.7
TPR.G28959 Trifolium pratense HOM05D004325 ORTHO05D005470 1.5e-56 223.4 137 82.5
Oeu001162.1 Olea europaea HOM05D004325 ORTHO05D005470 2.8e-55 219.2 129 86.0
Pp3c8_18130 Physcomitrium patens HOM05D004325 ORTHO05D005470 1.1e-54 217.2 168 64.9
AagrBONN_evm.TU.Sc2ySwM_344.4436 Anthoceros agrestis HOM05D004325 ORTHO05D005470 1.6e-53 213.4 173 59.5
Lalb_Chr13g0298551 Lupinus albus HOM05D004325 ORTHO05D005470 5.0e-52 208.4 130 81.5
Eucgr.E01982 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.3e-51 205.7 123 85.4
CiPaw.02G073600 Carya illinoinensis HOM05D004325 ORTHO05D005470 7.3e-51 204.5 206 59.2
MELO3C006723.2 Cucumis melo HOM05D004325 ORTHO05D005470 1.8e-49 199.9 130 78.5
HPP92_017247 Vanilla planifolia HOM05D004325 ORTHO05D005470 1.2e-48 197.2 132 77.3
CDE12G0495 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 3.4e-48 195.7 123 79.7
MSTRG.3849 Avicennia marina HOM05D004325 ORTHO05D005470 1.1e-46 190.7 126 75.4
Sopen01g024490 Solanum pennellii HOM05D004325 ORTHO05D005470 2.0e-45 186.4 110 85.5
Eucgr.D01598 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.5e-40 170.2 109 80.7
QL06p012738 Quercus lobata HOM05D004325 ORTHO05D005470 1.5e-40 170.2 100 83.0
Actinidia18462 Actinidia chinensis HOM05D004325 ORTHO05D005470 2.6e-40 169.5 113 79.6
Eucgr.D01586 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.4e-40 169.1 102 82.4
Eucgr.D01580 Eucalyptus grandis HOM05D004325 ORTHO05D005470 6.6e-36 154.8 93 82.8
HPP92_017255 Vanilla planifolia HOM05D004325 ORTHO05D005470 1.6e-34 150.2 102 76.5
PRCOL_00000812 Prasinoderma coloniale HOM05D004325 ORTHO05D005470 4.0e-33 145.6 166 44.6
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 4.4e-32 142.1 102 73.5
Eucgr.D01581 Eucalyptus grandis HOM05D004325 ORTHO05D005470 4.4e-32 142.1 82 86.6
DCAR_026989 Daucus carota HOM05D004325 ORTHO05D005470 2.9e-31 139.4 91 80.2
QL06p012730 Quercus lobata HOM05D004325 ORTHO05D005470 6.4e-31 138.3 81 86.4
MCO08G322 Micromonas commoda HOM05D004325 ORTHO05D005470 1.9e-30 136.7 162 42.6
Haze_26161 Corylus avellana HOM05D004325 ORTHO05D005470 1.3e-28 130.6 168 39.3
Eucgr.D01577 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.9e-28 129.0 95 71.6
Glyma.17G035301 Glycine max HOM05D004325 ORTHO05D005470 1.2e-26 124.0 101 68.3
Glyma.07G238200 Glycine max HOM05D004325 ORTHO05D005470 1.6e-26 123.6 75 82.7
Cre06.g261650 Chlamydomonas reinhardtii HOM05D004325 ORTHO05D005470 2.1e-26 123.2 163 38.0
MBI14_g36884_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 3.6e-26 122.5 104 64.4
CBR_g12436 Chara braunii HOM05D004325 ORTHO05D005470 1.4e-25 120.6 90 62.2
Actinidia31558 Actinidia chinensis HOM05D004325 ORTHO05D005470 3.2e-22 109.4 66 81.8
Eucgr.E01978 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.3e-15 87.4 60 75.0
CSS0004484 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.2e-13 80.9 111 48.6
CSS0039135 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 2.7e-13 79.7 114 47.4
CSS0044452 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 2.7e-13 79.7 114 47.4
CSS0031168 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.0e-12 77.8 114 46.5
CSS0013046 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.3e-12 77.4 114 46.5
Solyc01g058597.1 Solanum lycopersicum HOM05D004325 ORTHO05D005470 1.3e-12 77.4 49 77.6
TPR.G26018 Trifolium pratense HOM05D004325 ORTHO05D049290 6.2e-10 68.6 57 63.2
TPR.G25439 Trifolium pratense HOM05D004325 ORTHO05D005470 2.4e-09 66.6 115 40.0
Actinidia14254 Actinidia chinensis HOM05D004325 ORTHO05D005470 2.6e-08 63.2 36 83.3


User provided reference genes

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