Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044543 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 3.0e-172 608.6 347 100.0
CSS0047938 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 3.0e-172 608.6 347 100.0
CSS0016024 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 5.0e-119 431.8 352 70.7
Dinv33913 Davidia involucrata HOM05D005714 ORTHO05D006812 6.5e-119 431.4 352 69.3
CSS0020756 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 1.5e-118 430.3 352 70.5
Actinidia36301 Actinidia chinensis HOM05D005714 ORTHO05D006812 9.7e-115 417.5 352 70.5
Rhsim10G0064900 Rhododendron simsii HOM05D005714 ORTHO05D006812 2.1e-109 399.8 365 66.0
Lj7A8G44 Lonicera japonica HOM05D005714 ORTHO05D006812 3.6e-109 399.1 352 66.5
Prupe.3G242300 Prunus persica HOM05D005714 ORTHO05D006812 5.7e-107 391.7 352 63.4
Thecc.04G144400 Theobroma cacao HOM05D005714 ORTHO05D006812 1.3e-106 390.6 352 65.1
FvH4_6g45610 Fragaria vesca HOM05D005714 ORTHO05D006812 2.2e-106 389.8 352 63.9
RcHm_v2.0_Chr2g0163761 Rosa chinensis HOM05D005714 ORTHO05D006812 2.2e-106 389.8 352 63.6
CiPaw.03G006400 Carya illinoinensis HOM05D005714 ORTHO05D006812 7.0e-105 384.8 352 63.1
Cpa.g.sc179.47 Carica papaya HOM05D005714 ORTHO05D006812 1.0e-103 380.9 352 63.6
Cfa007977 Carpinus fangiana HOM05D001801 ORTHO05D001739 6.6e-103 378.3 352 62.8
MBI15_g36941_MAGBIO Magnolia biondii HOM05D005714 ORTHO05D006812 4.2e-102 375.6 353 61.8
Oeu032870.1 Olea europaea HOM05D005714 ORTHO05D006812 4.2e-102 375.6 353 60.9
MD09G1081200 Malus domestica HOM05D005714 ORTHO05D006812 5.5e-102 375.2 352 62.5
GSVIVG01036468001 Vitis vinifera HOM05D005714 ORTHO05D006812 6.1e-101 371.7 352 62.5
Nn3g17645 Nelumbo nucifera HOM05D005714 ORTHO05D006812 1.4e-100 370.5 362 61.3
COL.COLO4_03920 Corchorus olitorius HOM05D005714 ORTHO05D006812 3.0e-100 369.4 351 63.2
MD17G1072600 Malus domestica HOM05D005714 ORTHO05D006812 5.2e-100 368.6 352 62.2
Potri.017G110300 Populus trichocarpa HOM05D005714 ORTHO05D006812 3.4e-99 365.9 352 63.1
vmacro05584 Vaccinium macrocarpon HOM05D005714 ORTHO05D006812 5.7e-99 365.2 395 58.5
Cc07_g04960 Coffea canephora HOM05D005714 ORTHO05D006812 7.5e-99 364.8 353 61.8
Manes.02G065100 Manihot esculenta HOM05D005714 ORTHO05D006812 7.5e-99 364.8 352 62.5
CANSAT64G2721 Cannabis sativa HOM05D005714 ORTHO05D006812 1.7e-98 363.6 352 62.5
MSTRG.2945 Avicennia marina HOM05D005714 ORTHO05D006812 2.8e-98 362.8 353 61.5
Migut.H00540 Erythranthe guttata HOM05D005714 ORTHO05D006812 2.8e-98 362.8 351 61.5
Peaxi162Scf00479g00037 Petunia axillaris HOM05D005714 ORTHO05D006812 1.4e-97 360.5 352 62.2
Sabra17G0092200 Salix brachista HOM05D005714 ORTHO05D006812 4.1e-97 359.0 352 61.6
Gohir.D11G174600 Gossypium hirsutum HOM05D005714 ORTHO05D006812 1.6e-96 357.1 353 59.5
Gorai.007G187100 Gossypium raimondii HOM05D005714 ORTHO05D006812 2.7e-96 356.3 353 59.5
SalBow1G3421 Salvia bowleyana HOM05D005714 ORTHO05D006812 3.5e-96 355.9 353 61.2
THA.LOC104802994 Tarenaya hassleriana HOM05D005714 ORTHO05D006812 3.5e-96 355.9 352 61.4
Atru.BG.225.p Acer truncatum HOM05D005714 ORTHO05D006812 5.9e-96 355.1 353 63.5
Nitab4.5_0000612g0140 Nicotiana tabacum HOM05D005714 ORTHO05D006812 1.0e-95 354.4 352 61.9
Eucgr.J01456 Eucalyptus grandis HOM05D005714 ORTHO05D006812 1.3e-95 354.0 354 58.5
SalBow1G2935 Salvia bowleyana HOM05D005714 ORTHO05D006812 1.3e-95 354.0 353 60.9
PGSC0003DMG400018763 Solanum tuberosum HOM05D005714 ORTHO05D006812 1.3e-95 354.0 352 60.8
PGR042G2576 Punica granatum HOM05D005714 ORTHO05D006812 6.6e-95 351.7 352 60.8
Sc10g0001430 Simmondsia chinensis HOM05D005714 ORTHO05D006812 6.6e-95 351.7 352 61.9
SGA_v2.0_scaffold204G41660 Striga asiatica HOM05D005714 ORTHO05D006812 1.5e-94 350.5 353 61.2
Potri.004G105400 Populus trichocarpa HOM05D005714 ORTHO05D006812 3.3e-94 349.4 352 60.5
QL02p053457 Quercus lobata HOM05D005714 ORTHO05D006812 4.7e-93 345.5 349 58.7
CsaV3_3G020470 Cucumis sativus L. HOM05D005714 ORTHO05D006812 6.1e-93 345.1 353 61.5
FAN09G3422 Fragaria x ananassa HOM05D005714 ORTHO05D006812 1.8e-92 343.6 354 59.0
MELO3C023776.2 Cucumis melo HOM05D005714 ORTHO05D006812 2.3e-92 343.2 360 58.3
ECA232G3066 Erigeron canadensis HOM05D005714 ORTHO05D006812 4.0e-92 342.4 352 60.5
Sed0016830 Sechium edule HOM05D005714 ORTHO05D006812 5.2e-92 342.0 352 59.1
Lalb_Chr21g0317991 Lupinus albus HOM05D005714 ORTHO05D006812 1.5e-91 340.5 355 60.0
ClCG05G011990 Citrullus lanatus HOM05D005714 ORTHO05D006812 2.6e-91 339.7 368 60.3
Duzib138G1804 Durio zibethinus HOM05D005714 ORTHO05D006812 3.4e-91 339.3 352 59.1
Nitab4.5_0003161g0010 Nicotiana tabacum HOM05D005714 ORTHO05D006812 1.7e-90 337.0 344 59.3
Medtr6g016870 Medicago truncatula HOM05D005714 ORTHO05D006812 8.3e-90 334.7 358 58.9
Sp6g28230 Schrenkiella parvula HOM05D005714 ORTHO05D006812 1.4e-89 334.0 352 58.5
CARHR197420 Cardamine hirsuta HOM05D005714 ORTHO05D006812 1.2e-88 330.9 352 57.7
Ca_20731_v3 Cicer arietinum L. HOM05D005714 ORTHO05D006812 1.2e-88 330.9 356 58.1
AT5G15880 Arabidopsis thaliana HOM05D005714 ORTHO05D006812 3.5e-88 329.3 352 57.1
Phvul.004G049100 Phaseolus vulgaris HOM05D005714 ORTHO05D006812 4.6e-88 328.9 353 60.1
Thhalv10015850m.g Eutrema salsugineum HOM05D005714 ORTHO05D006812 7.8e-88 328.2 352 57.4
Carub.0006s1407 Capsella rubella HOM05D005714 ORTHO05D006812 1.7e-87 327.0 352 57.1
PSO063G3590 Papaver somniferum HOM05D005714 ORTHO05D006812 3.9e-87 325.9 356 57.6
Aa31LG11G13710 Aethionema arabicum HOM05D005714 ORTHO05D006812 5.0e-87 325.5 352 57.4
Sabra04G0076700 Salix brachista HOM05D005714 ORTHO05D006812 5.0e-87 325.5 422 50.5
BolC3t13356H Brassica oleracea HOM05D005714 ORTHO05D006812 8.6e-87 324.7 352 57.4
Aqoxy3G03832 Aquilegia oxysepala HOM05D005714 ORTHO05D006812 2.5e-86 323.2 352 58.5
C03p08510 Brassica napus HOM05D005714 ORTHO05D006812 2.5e-86 323.2 352 57.4
BraA03t10072Z Brassica rapa HOM05D005714 ORTHO05D006812 2.5e-86 323.2 353 57.2
BcaB08g36870 Brassica carinata HOM05D005714 ORTHO05D006812 5.6e-86 322.0 352 57.7
A03p07460 Brassica napus HOM05D005714 ORTHO05D006812 5.6e-86 322.0 353 57.2
Hund16108 Selenicereus undatus HOM05D005714 ORTHO05D006812 5.6e-86 322.0 364 58.5
C03p08640 Brassica napus HOM05D005714 ORTHO05D006812 3.6e-85 319.3 352 57.4
BolC3t13366H Brassica oleracea HOM05D005714 ORTHO05D006812 3.6e-85 319.3 352 57.4
BraA03t10075Z Brassica rapa HOM05D005714 ORTHO05D006812 4.7e-85 318.9 353 56.9
BraA10t44382Z Brassica rapa HOM05D005714 ORTHO05D006812 8.0e-85 318.2 352 57.1
Actinidia18116 Actinidia chinensis HOM05D005714 ORTHO05D006812 1.1e-84 317.8 354 58.8
AL6G26770 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 1.1e-84 317.8 352 57.1
AL6G26782 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 1.1e-84 317.8 352 57.1
CAN.G551.30 Capsicum annuum HOM05D005714 ORTHO05D006812 1.4e-84 317.4 347 57.9
arahy.Tifrunner.gnm1.ann1.AEQW57 Arachis hypogaea HOM05D005714 ORTHO05D006812 4.0e-84 315.8 354 60.2
HanXRQChr15g0490211 Helianthus annuus HOM05D005714 ORTHO05D006812 2.0e-83 313.5 356 55.9
TPR.G9671 Trifolium pratense HOM05D005714 ORTHO05D006812 2.0e-83 313.5 363 56.7
EL10Ac2g04627 Beta vulgaris HOM05D005714 ORTHO05D006812 3.4e-83 312.8 357 55.7
TWI74G1644 Tripterygium wilfordii HOM05D005714 ORTHO05D006812 4.4e-83 312.4 352 57.4
arahy.Tifrunner.gnm1.ann1.R8VTVZ Arachis hypogaea HOM05D005714 ORTHO05D006812 1.4e-81 307.4 376 56.9
BolC9t58957H Brassica oleracea HOM05D005714 ORTHO05D006812 1.0e-79 301.2 355 56.6
PSO782G2399 Papaver somniferum HOM05D005714 ORTHO05D006812 1.1e-78 297.7 342 55.3
Ah.10g037360 Amaranthus hybridus HOM05D005714 ORTHO05D006812 1.9e-78 297.0 341 55.1
BcaB01g05015 Brassica carinata HOM05D005714 ORTHO05D006812 1.9e-78 297.0 332 56.6
Lsat_1_v5_gn_4_175801 Lactuca sativa HOM05D005714 ORTHO05D006812 8.9e-76 288.1 346 53.8
Ciclev10012317m.g Citrus clementina HOM05D005714 ORTHO05D006812 1.4e-73 280.8 301 58.5
Lj2g0024465 Lotus japonicus HOM05D005714 ORTHO05D006812 3.5e-72 276.2 345 51.9
HPP92_027404 Vanilla planifolia HOM05D005714 ORTHO05D006812 7.8e-72 275.0 356 48.9
CDE02G2817 Ceratophyllum demersum HOM05D005714 ORTHO05D006812 5.6e-70 268.9 382 47.4
Gohir.A11G168300 Gossypium hirsutum HOM05D005714 ORTHO05D006812 5.4e-65 252.3 266 56.8
Os09g0108400 Oryza sativa ssp. japonica HOM05D005714 ORTHO05D006812 3.5e-64 249.6 351 46.4
unitig_899.g15126 Utricularia gibba HOM05D005714 ORTHO05D006812 1.3e-58 231.1 353 47.9
FAN05G0119 Fragaria x ananassa HOM05D005714 ORTHO05D006812 3.3e-54 216.5 201 61.7
Psat1g062640 Pisum sativum HOM05D005714 ORTHO05D006812 3.3e-54 216.5 237 59.1
VMungo0464G1377 Vigna mungo HOM05D005714 ORTHO05D006812 1.3e-53 214.5 235 57.0
Zm00001eb208920 Zea mays HOM05D005714 ORTHO05D006812 2.1e-53 213.8 330 48.5
Cfa007975 Carpinus fangiana HOM05D005714 ORTHO05D006812 7.6e-51 205.3 317 45.7
TAR622G1272 Trochodendron aralioides HOM05D005714 ORTHO05D006812 1.0e-47 194.9 194 59.3
Glyma.19G041200 Glycine max HOM05D005714 ORTHO05D006812 3.9e-47 193.0 168 68.5
Solyc03g046260.2 Solanum lycopersicum HOM05D005714 ORTHO05D006812 4.2e-41 172.9 228 50.9
RcHm_v2.0_Chr2g0163701 Rosa chinensis HOM05D005714 ORTHO05D006812 3.5e-40 169.9 141 65.2
AUR62014554 Chenopodium quinoa HOM05D005714 ORTHO05D006812 2.8e-37 160.2 235 46.4
MD17G1072400 Malus domestica HOM05D005714 ORTHO05D006812 9.0e-36 155.2 203 50.2
AUR62008947 Chenopodium quinoa HOM05D005714 ORTHO05D006812 2.6e-35 153.7 237 44.3
Pp3c1_6350 Physcomitrium patens HOM05D005714 ORTHO05D006812 1.2e-32 144.8 380 33.9
A10p17320 Brassica napus HOM05D000327 ORTHO05D006812 6.7e-31 139.0 235 44.7
AagrBONN_evm.TU.Sc2ySwM_344.4539 Anthoceros agrestis HOM05D005714 ORTHO05D006812 2.2e-29 134.0 295 36.6
ATR0752G036 Amborella trichopoda HOM05D005714 ORTHO05D006812 8.2e-29 132.1 229 44.1
ATR0752G125 Amborella trichopoda HOM05D005714 ORTHO05D006812 9.0e-28 128.6 153 54.2
C09p61160 Brassica napus HOM05D005714 ORTHO05D006812 2.9e-26 123.6 112 65.2
SMO139G0044 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 1.6e-24 117.9 312 34.3
Mapoly0066s0019 Marchantia polymorpha HOM05D005714 ORTHO05D006812 2.7e-24 117.1 370 31.1
Sopen03g009720 Solanum pennellii HOM05D005714 ORTHO05D006812 2.2e-21 107.5 96 61.5
C09p61150 Brassica napus HOM05D005714 ORTHO05D006812 1.8e-20 104.4 102 58.8
BcaC04g18926 Brassica carinata HOM05D005714 ORTHO05D006812 1.7e-18 97.8 130 50.0
RcHm_v2.0_Chr2g0163721 Rosa chinensis HOM05D005714 ORTHO05D006812 3.8e-18 96.7 72 70.8
SMO145G0024 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 2.3e-15 87.4 304 33.6
SEGI_18448 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 2.8e-13 80.5 187 38.5
Medtr3g067495 Medicago truncatula HOM05D005714 ORTHO05D006812 1.4e-12 78.2 94 53.2
BcaB07g33635 Brassica carinata HOM05D005714 ORTHO05D006812 2.4e-12 77.4 125 43.2
RcHm_v2.0_Chr2g0163711 Rosa chinensis HOM05D005714 ORTHO05D006812 1.0e-10 72.0 77 58.4
RcHm_v2.0_Chr2g0163621 Rosa chinensis HOM05D005714 ORTHO05D006812 1.3e-10 71.6 88 52.3
BcaB08g36868 Brassica carinata HOM05D005714 ORTHO05D006812 6.5e-10 69.3 127 45.7
FAN09G3753 Fragaria x ananassa HOM05D001104 ORTHO05D008876 9.4e-09 65.5 48 68.8
Rhsim13G0123000 Rhododendron simsii HOM05D005129 ORTHO05D005585 1.0e-07 62.0 59 66.1
RcHm_v2.0_Chr2g0163651 Rosa chinensis HOM05D005714 ORTHO05D006812 2.3e-07 60.8 82 47.6
SEGI_16525 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 2.3e-07 60.8 97 40.2
BcaB01g04945 Brassica carinata HOM05D004183 ORTHO05D005022 6.7e-07 59.3 100 45.0
FvH4_4g27140 Fragaria vesca HOM05D063885 ORTHO05D046237 9.7e-06 55.5 42 69.0


User provided reference genes

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