Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047927 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 5.4e-54 214.2 114 100.0
CSS0000756 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 7.3e-51 203.8 114 94.7
Manes.08G156800 Manihot esculenta HOM05D004600 ORTHO05D005471 2.4e-46 188.7 114 86.8
Actinidia30941 Actinidia chinensis HOM05D004600 ORTHO05D005471 3.2e-46 188.3 112 88.4
Gohir.D11G317800 Gossypium hirsutum HOM05D004600 ORTHO05D005471 4.1e-46 188.0 114 85.1
Gorai.007G347600 Gossypium raimondii HOM05D004600 ORTHO05D005471 4.1e-46 188.0 114 85.1
QL02p099100 Quercus lobata HOM05D004600 ORTHO05D005471 7.0e-46 187.2 112 87.5
Thecc.05G234100 Theobroma cacao HOM05D004600 ORTHO05D005471 9.2e-46 186.8 114 85.1
Rhsim07G0038000 Rhododendron simsii HOM05D004600 ORTHO05D005471 1.6e-45 186.0 114 86.8
arahy.Tifrunner.gnm1.ann1.FL4BP3 Arachis hypogaea HOM05D004600 ORTHO05D005471 2.7e-45 185.3 114 85.1
Cfa003694 Carpinus fangiana HOM05D004600 ORTHO05D005471 2.7e-45 185.3 114 83.3
Hma1.2p1_2581F.1_g324750 Hydrangea macrophylla HOM05D004600 ORTHO05D005471 2.7e-45 185.3 112 86.6
GSVIVG01018312001 Vitis vinifera HOM05D004600 ORTHO05D005471 3.5e-45 184.9 112 84.8
arahy.Tifrunner.gnm1.ann1.8V97K8 Arachis hypogaea HOM05D004600 ORTHO05D005471 7.8e-45 183.7 114 84.2
Duzib177G1065 Durio zibethinus HOM05D004600 ORTHO05D005471 1.3e-44 183.0 114 84.2
Lalb_Chr10g0107261 Lupinus albus HOM05D004600 ORTHO05D005471 1.7e-44 182.6 114 82.5
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 5.0e-44 181.0 110 85.5
Gohir.A11G302200 Gossypium hirsutum HOM05D004600 ORTHO05D005471 5.0e-44 181.0 114 82.5
Sed0004677 Sechium edule HOM05D004600 ORTHO05D005471 6.6e-44 180.6 112 82.1
Sed0013640 Sechium edule HOM05D004600 ORTHO05D005471 6.6e-44 180.6 112 82.1
MSTRG.28140 Avicennia marina HOM05D004600 ORTHO05D005471 8.6e-44 180.3 114 83.3
ECA234G0066 Erigeron canadensis HOM05D004600 ORTHO05D005471 1.1e-43 179.9 112 82.1
EL10Ac2g03665 Beta vulgaris HOM05D004600 ORTHO05D005471 1.5e-43 179.5 114 82.5
Oeu011239.1 Olea europaea HOM05D004600 ORTHO05D005471 2.5e-43 178.7 114 81.6
Migut.N01726 Erythranthe guttata HOM05D004600 ORTHO05D005471 3.3e-43 178.3 114 81.6
Ca_06414_v3 Cicer arietinum L. HOM05D004600 ORTHO05D005471 4.3e-43 177.9 115 83.5
Eucgr.E01748 Eucalyptus grandis HOM05D004600 ORTHO05D005471 4.3e-43 177.9 114 81.6
Actinidia05778 Actinidia chinensis HOM05D000441 ORTHO05D005471 5.6e-43 177.6 104 89.4
AT2G30410 Arabidopsis thaliana HOM05D004600 ORTHO05D005471 5.6e-43 177.6 114 78.9
CiPaw.11G057300 Carya illinoinensis HOM05D004600 ORTHO05D005471 5.6e-43 177.6 114 80.7
Thhalv10017954m.g Eutrema salsugineum HOM05D004600 ORTHO05D005471 7.3e-43 177.2 114 79.8
Manes.09G132900 Manihot esculenta HOM05D004600 ORTHO05D005471 7.3e-43 177.2 112 80.4
FvH4_7g07840 Fragaria vesca HOM05D004600 ORTHO05D005471 9.5e-43 176.8 115 81.7
FvH4_7g08250 Fragaria vesca HOM05D004600 ORTHO05D005471 9.5e-43 176.8 115 81.7
FAN01G2185 Fragaria x ananassa HOM05D004600 ORTHO05D005471 9.5e-43 176.8 115 81.7
FAN06G4779 Fragaria x ananassa HOM05D004600 ORTHO05D005471 9.5e-43 176.8 115 81.7
THA.LOC104805733 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 9.5e-43 176.8 114 78.9
ClCG06G000640 Citrullus lanatus HOM05D004600 ORTHO05D005471 1.2e-42 176.4 112 79.5
DCAR_002257 Daucus carota HOM05D004600 ORTHO05D005471 1.2e-42 176.4 112 79.5
SalBow5G2739 Salvia bowleyana HOM05D004600 ORTHO05D005471 1.2e-42 176.4 114 80.7
SalBow5G4978 Salvia bowleyana HOM05D004600 ORTHO05D005471 1.2e-42 176.4 114 80.7
TAR374G1537 Trochodendron aralioides HOM05D004600 ORTHO05D005471 1.2e-42 176.4 114 83.3
HanXRQChr06g0175191 Helianthus annuus HOM05D004600 ORTHO05D005471 2.1e-42 175.6 111 80.2
Glyma.12G219600 Glycine max HOM05D004600 ORTHO05D005471 2.8e-42 175.3 110 82.7
Carub.0004s1157 Capsella rubella HOM05D004600 ORTHO05D005471 3.6e-42 174.9 114 77.2
Cpa.g.sc73.56 Carica papaya HOM05D004600 ORTHO05D005471 3.6e-42 174.9 114 78.9
PGR042G2124 Punica granatum HOM05D004600 ORTHO05D005471 3.6e-42 174.9 114 79.8
THA.LOC104821611 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 3.6e-42 174.9 114 78.1
TWI32G0106 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 3.6e-42 174.9 112 80.4
MD07G1080900 Malus domestica HOM05D004600 ORTHO05D005471 4.7e-42 174.5 115 81.7
Prupe.2G105900 Prunus persica HOM05D004600 ORTHO05D005471 6.2e-42 174.1 115 80.9
MD02G1232800 Malus domestica HOM05D004600 ORTHO05D005471 8.1e-42 173.7 115 80.0
HanXRQChr17g0540501 Helianthus annuus HOM05D004600 ORTHO05D005471 1.4e-41 172.9 112 78.6
Potri.013G071100 Populus trichocarpa HOM05D004600 ORTHO05D005471 1.4e-41 172.9 113 78.8
CARHR123850 Cardamine hirsuta HOM05D004600 ORTHO05D005471 1.8e-41 172.6 112 77.7
TPR.G31719 Trifolium pratense HOM05D004600 ORTHO05D005471 1.8e-41 172.6 115 80.0
TWI34G1465 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 1.8e-41 172.6 112 79.5
CAN.G179.37 Capsicum annuum HOM05D004600 ORTHO05D005471 2.3e-41 172.2 114 78.1
SpUn0968_0010 Schrenkiella parvula HOM05D004600 ORTHO05D005471 2.3e-41 172.2 115 79.1
Hund03244 Selenicereus undatus HOM05D004600 ORTHO05D005471 2.3e-41 172.2 114 79.8
Ciclev10033122m.g Citrus clementina HOM05D004600 ORTHO05D005471 3.1e-41 171.8 114 79.8
DCAR_002240 Daucus carota HOM05D000064 ORTHO05D001307 3.1e-41 171.8 106 82.1
Aqoxy3G02625 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 4.0e-41 171.4 114 79.8
Aqoxy4G01604 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 4.0e-41 171.4 114 79.8
RcHm_v2.0_Chr1g0341631 Rosa chinensis HOM05D004600 ORTHO05D005471 4.0e-41 171.4 115 79.1
Sabra13G0062000 Salix brachista HOM05D004600 ORTHO05D005471 4.0e-41 171.4 113 79.6
vmacro13519 Vaccinium macrocarpon HOM05D004600 ORTHO05D005471 4.0e-41 171.4 142 69.0
AUR62010214 Chenopodium quinoa HOM05D004600 ORTHO05D005471 5.2e-41 171.0 114 77.2
AUR62023888 Chenopodium quinoa HOM05D004600 ORTHO05D005471 5.2e-41 171.0 114 77.2
Sopen01g030360 Solanum pennellii HOM05D004600 ORTHO05D005471 5.2e-41 171.0 114 76.3
Solyc01g068400.3 Solanum lycopersicum HOM05D004600 ORTHO05D005471 6.8e-41 170.6 114 76.3
PSO782G3599 Papaver somniferum HOM05D004600 ORTHO05D005471 8.9e-41 170.2 114 77.2
AL136U10020 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 1.5e-40 169.5 114 76.3
AL4G25280 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 1.5e-40 169.5 114 76.3
Glyma.13G281700 Glycine max HOM05D004600 ORTHO05D005471 1.5e-40 169.5 112 79.5
PGSC0003DMG400017954 Solanum tuberosum HOM05D004600 ORTHO05D005471 1.5e-40 169.5 114 75.4
Lsat_1_v5_gn_3_31540 Lactuca sativa HOM05D004600 ORTHO05D005471 3.4e-40 168.3 112 78.6
PSO063G0817 Papaver somniferum HOM05D004600 ORTHO05D005471 3.4e-40 168.3 114 76.3
Phvul.008G274500 Phaseolus vulgaris HOM05D004600 ORTHO05D005471 3.4e-40 168.3 114 77.2
MBI04_g38566_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 4.4e-40 167.9 112 77.7
Nitab4.5_0006200g0020 Nicotiana tabacum HOM05D004600 ORTHO05D005471 4.4e-40 167.9 114 74.6
SalBow2G1105 Salvia bowleyana HOM05D004600 ORTHO05D005471 7.5e-40 167.2 114 76.3
Cc10_g08750 Coffea canephora HOM05D004600 ORTHO05D005471 9.8e-40 166.8 108 79.6
Carub.0004s0600 Capsella rubella HOM05D004600 ORTHO05D005471 1.3e-39 166.4 113 77.9
Ciclev10017245m.g Citrus clementina HOM05D004600 ORTHO05D005471 1.3e-39 166.4 114 78.1
LjContig00272g0018481 Lotus japonicus HOM05D004600 ORTHO05D005471 1.3e-39 166.4 114 76.3
VMungo0647G0484 Vigna mungo HOM05D004600 ORTHO05D005471 1.7e-39 166.0 111 75.7
CsaV3_6G006410 Cucumis sativus L. HOM05D004600 ORTHO05D005471 2.9e-39 165.2 105 81.0
Nn6g33746 Nelumbo nucifera HOM05D004600 ORTHO05D005471 2.9e-39 165.2 114 78.1
CANSAT56G0524 Cannabis sativa HOM05D004600 ORTHO05D005471 4.9e-39 164.5 111 77.5
CANSAT80G0198 Cannabis sativa HOM05D004600 ORTHO05D005471 8.3e-39 163.7 111 77.5
MELO3C022478.2 Cucumis melo HOM05D004600 ORTHO05D005471 1.1e-38 163.3 112 73.2
Medtr5g094290 Medicago truncatula HOM05D004600 ORTHO05D005471 1.4e-38 162.9 115 76.5
A05p15020 Brassica napus HOM05D004600 ORTHO05D005471 3.2e-38 161.8 114 75.4
BolC4t23549H Brassica oleracea HOM05D004600 ORTHO05D005471 3.2e-38 161.8 114 75.4
BraA05t20428Z Brassica rapa HOM05D004600 ORTHO05D005471 3.2e-38 161.8 114 75.4
BcaC02g11135 Brassica carinata HOM05D004600 ORTHO05D005471 4.1e-38 161.4 114 75.4
Peaxi162Scf00309g00111 Petunia axillaris HOM05D004600 ORTHO05D005471 5.4e-38 161.0 114 73.7
BcaB02g10324 Brassica carinata HOM05D004600 ORTHO05D005471 7.1e-38 160.6 114 75.4
C04p20100 Brassica napus HOM05D004600 ORTHO05D005471 7.1e-38 160.6 114 74.6
FAN10G3323 Fragaria x ananassa HOM05D004600 ORTHO05D005471 7.1e-38 160.6 146 64.4
MBI14_g39049_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 1.2e-37 159.8 112 75.9
BcaB01g04106 Brassica carinata HOM05D004600 ORTHO05D005471 1.6e-37 159.5 114 75.4
Medtr5g094860 Medicago truncatula HOM05D004600 ORTHO05D005471 2.1e-37 159.1 115 74.8
Peaxi162Scf00519g00014 Petunia axillaris HOM05D004600 ORTHO05D005471 8.6e-36 153.7 104 76.9
ATR0594G180 Amborella trichopoda HOM05D004600 ORTHO05D005471 1.9e-35 152.5 114 71.9
Aa31LG2G2070 Aethionema arabicum HOM05D004600 ORTHO05D005471 4.3e-35 151.4 114 71.1
Nitab4.5_0002801g0010 Nicotiana tabacum HOM05D004600 ORTHO05D005471 5.6e-35 151.0 145 58.6
CDE02G3136 Ceratophyllum demersum HOM05D004600 ORTHO05D005471 2.1e-34 149.1 114 69.3
HPP92_003331 Vanilla planifolia HOM05D004600 ORTHO05D005471 2.1e-34 149.1 112 70.5
Os02g0816500 Oryza sativa ssp. japonica HOM05D004600 ORTHO05D005471 3.1e-33 145.2 84 88.1
Zm00001eb258870 Zea mays HOM05D004600 ORTHO05D005471 5.8e-32 141.0 79 89.9
COL.COLO4_33093 Corchorus olitorius HOM05D004600 ORTHO05D005471 7.6e-32 140.6 94 77.7
Haze_15791 Corylus avellana HOM05D004600 ORTHO05D005471 7.6e-32 140.6 80 88.8
arahy.Tifrunner.gnm1.ann1.AN2C62 Arachis hypogaea HOM05D004600 ORTHO05D005471 9.9e-32 140.2 92 80.4
Atru.chr2.1648 Acer truncatum HOM05D004600 ORTHO05D005471 1.3e-31 139.8 80 88.8
SEGI_02498 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 1.1e-30 136.7 111 64.9
BcaNung06780 Brassica carinata HOM05D004600 ORTHO05D005471 1.9e-30 136.0 100 73.0
Aa31LG5G6310 Aethionema arabicum HOM05D004600 ORTHO05D005471 2.1e-29 132.5 115 66.1
unitig_22.g5795 Utricularia gibba HOM05D004600 ORTHO05D005471 3.5e-29 131.7 106 64.2
Duzib106G0868 Durio zibethinus HOM05D004600 ORTHO05D005471 4.6e-29 131.3 77 88.3
SEGI_10368 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 2.3e-28 129.0 111 61.3
Psat2g010800 Pisum sativum HOM05D004600 ORTHO05D005471 3.9e-28 128.3 83 78.3
Psat6g223560 Pisum sativum HOM05D004600 ORTHO05D005471 3.9e-28 128.3 83 78.3
arahy.Tifrunner.gnm1.ann1.TEM6YH Arachis hypogaea HOM05D004600 ORTHO05D005471 5.1e-28 127.9 75 85.3
COL.COLO4_34174 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.2e-24 116.7 72 81.9
RcHm_v2.0_Chr1g0341741 Rosa chinensis HOM05D004600 ORTHO05D005471 5.8e-24 114.4 65 89.2
RhsimUnG0214300 Rhododendron simsii HOM05D004600 ORTHO05D005471 7.6e-24 114.0 103 58.3
SMO140G0024 Selaginella moellendorffii HOM05D004600 ORTHO05D005471 9.9e-24 113.6 77 72.7
arahy.Tifrunner.gnm1.ann1.M3PSJH Arachis hypogaea HOM05D004254 ORTHO05D005184 4.9e-23 111.3 69 79.7
PSO017G3083 Papaver somniferum HOM05D004600 ORTHO05D005471 1.9e-22 109.4 114 57.0
BcaNung05668 Brassica carinata HOM05D004600 ORTHO05D005471 2.1e-21 105.9 77 71.4
BcaNung05666 Brassica carinata HOM05D004600 ORTHO05D005471 1.0e-20 103.6 77 70.1
Mapoly0038s0031 Marchantia polymorpha HOM05D004600 ORTHO05D005471 3.9e-20 101.7 102 51.0
CBR_g52286 Chara braunii HOM05D004600 ORTHO05D005471 6.6e-20 100.9 102 56.9
COL.COLO4_33692 Corchorus olitorius HOM05D004600 ORTHO05D005471 9.6e-19 97.1 100 59.0
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 3.6e-18 95.1 102 53.9
Sc01g0008330 Simmondsia chinensis HOM05D004600 ORTHO05D005471 4.8e-18 94.7 65 73.8
AUR62013210 Chenopodium quinoa HOM05D004600 ORTHO05D005471 1.4e-17 93.2 63 74.6
Pp3c8_15900 Physcomitrium patens HOM05D004600 ORTHO05D005471 6.9e-17 90.9 109 44.0
FAN01G1805 Fragaria x ananassa HOM05D004600 ORTHO05D005471 3.8e-15 85.1 57 77.2
SGA_v2.0_scaffold77G25264 Striga asiatica HOM05D000763 ORTHO05D000599 5.4e-14 81.3 95 52.6
RcHm_v2.0_Chr1g0341961 Rosa chinensis HOM05D004600 ORTHO05D005471 1.2e-13 80.1 51 84.3
Oeu019263.1 Olea europaea HOM05D004600 ORTHO05D005471 1.6e-13 79.7 55 78.2
Pp3c5_8620 Physcomitrium patens HOM05D004600 ORTHO05D005471 2.7e-13 79.0 76 51.3
RcHm_v2.0_Chr4g0446751 Rosa chinensis HOM05D004600 ORTHO05D005471 2.7e-13 79.0 50 82.0
Cre16.g670800 Chlamydomonas reinhardtii HOM05D004600 ORTHO05D005471 4.6e-13 78.2 106 44.3
MBI18_g40062_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 1.0e-12 77.0 45 86.7
Pp3c15_6440 Physcomitrium patens HOM05D004600 ORTHO05D005471 1.3e-12 76.6 104 46.2
HanXRQChr10g0286821 Helianthus annuus HOM05D004600 ORTHO05D005471 1.8e-12 76.3 43 86.0
arahy.Tifrunner.gnm1.ann1.3LH6CZ Arachis hypogaea HOM05D004600 ORTHO05D021519 3.0e-12 75.5 91 49.5
RcHm_v2.0_Chr1g0342531 Rosa chinensis HOM05D004600 ORTHO05D005471 3.9e-12 75.1 43 86.0
RcHm_v2.0_Chr3g0457191 Rosa chinensis HOM05D004600 ORTHO05D005471 3.9e-12 75.1 51 78.4
A03p17010 Brassica napus HOM05D004600 ORTHO05D005471 8.7e-12 73.9 60 66.7
HanXRQChr02g0044381 Helianthus annuus HOM05D004600 ORTHO05D005471 1.5e-11 73.2 43 81.4
MCO15G208 Micromonas commoda HOM05D004600 ORTHO05D005471 2.5e-11 72.4 108 43.5
COL.COLO4_28352 Corchorus olitorius HOM05D004600 ORTHO05D005471 7.4e-11 70.9 44 72.7
COL.COLO4_33704 Corchorus olitorius HOM05D004600 ORTHO05D005471 9.6e-11 70.5 95 51.6
C03p20070 Brassica napus HOM05D004600 ORTHO05D005471 2.1e-10 69.3 99 48.5
PRCOL_00002235 Prasinoderma coloniale HOM05D004600 ORTHO05D005471 1.4e-09 66.6 95 41.1
BcaC01g05996 Brassica carinata HOM05D004600 ORTHO05D005471 3.1e-09 65.5 97 47.4
Pp3c12_22810 Physcomitrium patens HOM05D004600 ORTHO05D005471 2.6e-08 62.4 59 47.5


User provided reference genes

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