Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047900 Camellia sinensis var. sinensis HOM05D005467 ORTHO05D006523 2.2e-241 838.6 422 100.0
Actinidia14942 Actinidia chinensis HOM05D005467 ORTHO05D006523 1.6e-212 742.7 420 88.1
Rhsim09G0101300 Rhododendron simsii HOM05D005467 ORTHO05D006523 7.0e-200 700.7 470 78.7
Hma1.2p1_0114F.1_g055340 Hydrangea macrophylla HOM05D005467 ORTHO05D006523 1.2e-194 683.3 424 80.2
Potri.010G116200 Populus trichocarpa HOM05D005467 ORTHO05D006523 6.6e-190 667.5 419 79.2
GSVIVG01011792001 Vitis vinifera HOM05D005467 ORTHO05D006523 1.5e-189 666.4 411 80.5
Gorai.012G123600 Gossypium raimondii HOM05D005467 ORTHO05D006523 7.3e-189 664.1 415 78.8
Cfa008565 Carpinus fangiana HOM05D005467 ORTHO05D006523 1.6e-188 662.9 422 77.7
Thecc.02G211500 Theobroma cacao HOM05D005467 ORTHO05D006523 1.6e-188 662.9 414 77.3
CiPaw.05G246600 Carya illinoinensis HOM05D005467 ORTHO05D006523 3.6e-188 661.8 422 78.4
Ciclev10015390m.g Citrus clementina HOM05D005467 ORTHO05D006523 3.6e-188 661.8 411 78.3
Gohir.A04G099200 Gossypium hirsutum HOM05D005467 ORTHO05D006523 2.3e-187 659.1 412 79.1
Nn3g18021 Nelumbo nucifera HOM05D005467 ORTHO05D006523 8.9e-187 657.1 422 76.8
RcHm_v2.0_Chr4g0433781 Rosa chinensis HOM05D005467 ORTHO05D006523 8.9e-187 657.1 411 78.8
PGR119G0286 Punica granatum HOM05D005467 ORTHO05D006523 1.5e-186 656.4 415 77.1
MD16G1031500 Malus domestica HOM05D005467 ORTHO05D006523 5.8e-186 654.4 411 77.6
TAR629G1677 Trochodendron aralioides HOM05D005467 ORTHO05D006523 3.7e-185 651.7 422 75.6
FvH4_4g26200 Fragaria vesca HOM05D005467 ORTHO05D006523 1.9e-184 649.4 422 76.5
FAN07G0694 Fragaria x ananassa HOM05D005467 ORTHO05D006523 2.0e-183 646.0 422 76.8
TWI31G0476 Tripterygium wilfordii HOM05D005467 ORTHO05D006523 1.7e-182 642.9 411 77.4
Lj6C750G3 Lonicera japonica HOM05D005467 ORTHO05D006523 2.3e-182 642.5 426 76.5
Sabra10G0087600 Salix brachista HOM05D005467 ORTHO05D006523 6.6e-182 641.0 446 74.0
Migut.L00653 Erythranthe guttata HOM05D005467 ORTHO05D006523 8.6e-182 640.6 412 76.2
Migut.L00826 Erythranthe guttata HOM05D005467 ORTHO05D006523 1.9e-181 639.4 412 76.2
QL01p002615 Quercus lobata HOM05D005467 ORTHO05D006523 4.3e-181 638.3 503 65.6
Lj5g0001822 Lotus japonicus HOM05D005467 ORTHO05D006523 9.5e-181 637.1 422 73.9
Manes.06G062500 Manihot esculenta HOM05D005467 ORTHO05D006523 1.2e-180 636.7 422 74.6
Glyma.10G266400 Glycine max HOM05D005467 ORTHO05D006523 1.6e-180 636.3 422 73.9
Sabra10G0086000 Salix brachista HOM05D005467 ORTHO05D006523 2.1e-180 636.0 450 72.9
HanXRQChr15g0477671 Helianthus annuus HOM05D005467 ORTHO05D006523 3.6e-180 635.2 415 74.9
Glyma.20G124100 Glycine max HOM05D005467 ORTHO05D006523 1.2e-178 630.2 427 73.5
Sed0008724 Sechium edule HOM05D005467 ORTHO05D006523 1.2e-178 630.2 416 73.3
ECA246G2902 Erigeron canadensis HOM05D005467 ORTHO05D006523 4.4e-178 628.2 418 74.9
Eucgr.G02222 Eucalyptus grandis HOM05D005467 ORTHO05D006523 2.2e-177 625.9 409 74.3
arahy.Tifrunner.gnm1.ann1.U1J3BU Arachis hypogaea HOM05D005467 ORTHO05D006523 2.9e-177 625.5 411 74.2
CsaV3_5G034840 Cucumis sativus L. HOM05D005467 ORTHO05D006523 1.1e-176 623.6 410 73.7
Lalb_Chr21g0308561 Lupinus albus HOM05D005467 ORTHO05D006523 1.1e-176 623.6 413 73.8
Phvul.007G035400 Phaseolus vulgaris HOM05D005467 ORTHO05D006523 1.1e-176 623.6 422 72.5
CANSAT01G3134 Cannabis sativa HOM05D005467 ORTHO05D006523 1.4e-176 623.2 412 74.5
VMungo0720G1946 Vigna mungo HOM05D005467 ORTHO05D006523 7.1e-176 620.9 422 71.6
DCAR_007277 Daucus carota HOM05D005467 ORTHO05D006523 1.5e-173 613.2 420 72.1
arahy.Tifrunner.gnm1.ann1.F0PHAM Arachis hypogaea HOM05D005467 ORTHO05D006523 2.5e-173 612.5 432 70.4
TPR.G4835 Trifolium pratense HOM05D005467 ORTHO05D006523 4.3e-173 611.7 418 70.8
Medtr1g108650 Medicago truncatula HOM05D005467 ORTHO05D006523 1.6e-172 609.8 422 70.1
Peaxi162Scf00205g00928 Petunia axillaris HOM05D005467 ORTHO05D006523 4.7e-172 608.2 409 73.3
Aqoxy3G00153 Aquilegia oxysepala HOM05D005467 ORTHO05D006523 5.2e-171 604.7 422 71.6
Sopen05g004250 Solanum pennellii HOM05D005467 ORTHO05D006523 5.2e-171 604.7 409 73.6
Nitab4.5_0000350g0200 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.5e-170 603.2 407 73.2
PSO063G5439 Papaver somniferum HOM05D005467 ORTHO05D006523 4.4e-170 601.7 420 69.8
FAN12G3855 Fragaria x ananassa HOM05D005467 ORTHO05D006523 9.9e-170 600.5 422 72.7
CAN.G1489.4 Capsicum annuum HOM05D005467 ORTHO05D006523 2.2e-169 599.4 405 74.1
PSO782G0553 Papaver somniferum HOM05D005467 ORTHO05D006523 3.8e-169 598.6 424 69.3
Prupe.1G321400 Prunus persica HOM05D005467 ORTHO05D006523 8.4e-169 597.4 363 81.0
FAN12G1869 Fragaria x ananassa HOM05D005467 ORTHO05D006523 1.9e-168 596.3 422 72.5
ClCG05G022280 Citrullus lanatus HOM05D005467 ORTHO05D006523 7.1e-168 594.3 490 63.1
Psat6g222960 Pisum sativum HOM05D005467 ORTHO05D006523 7.1e-168 594.3 422 69.0
Atru.chr11.358 Acer truncatum HOM05D005467 ORTHO05D006523 6.6e-166 587.8 383 76.8
MBI10_g46301_MAGBIO Magnolia biondii HOM05D005467 ORTHO05D006523 8.7e-166 587.4 362 77.9
Solyc05g008420.4 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.1e-163 580.5 396 73.2
vmacro10622 Vaccinium macrocarpon HOM05D005467 ORTHO05D006523 1.8e-163 579.7 477 67.1
Duzib248G1088 Durio zibethinus HOM05D005467 ORTHO05D006523 3.1e-163 578.9 412 72.1
AUR62014129 Chenopodium quinoa HOM05D005467 ORTHO05D006523 1.5e-162 576.6 437 66.8
Ca_11108_v3 Cicer arietinum L. HOM05D005467 ORTHO05D006523 2.2e-161 572.8 415 67.7
Ah.02g128100 Amaranthus hybridus HOM05D005467 ORTHO05D006523 3.0e-158 562.4 435 64.4
Dinv05879 Davidia involucrata HOM05D005467 ORTHO05D006523 9.6e-157 557.4 336 83.6
Hund24998 Selenicereus undatus HOM05D005467 ORTHO05D006523 3.6e-156 555.4 425 67.5
Os01g0506200 Oryza sativa ssp. japonica HOM05D005467 ORTHO05D006523 6.2e-156 554.7 409 64.5
Cpa.g.sc65.104 Carica papaya HOM05D005467 ORTHO05D006523 5.3e-155 551.6 422 68.5
TAR622G1271 Trochodendron aralioides HOM05D005467 ORTHO05D006523 3.5e-151 538.9 341 78.3
MSTRG.879 Avicennia marina HOM05D005467 ORTHO05D006523 2.3e-150 536.2 359 73.3
Gohir.D04G138632 Gossypium hirsutum HOM05D005467 ORTHO05D006523 1.6e-148 530.0 349 75.9
SGA_v2.0_scaffold50G18532 Striga asiatica HOM05D005467 ORTHO05D006523 6.2e-148 528.1 449 61.9
MELO3C012295.2 Cucumis melo HOM05D005467 ORTHO05D006523 3.8e-145 518.8 357 71.7
AUR62039552 Chenopodium quinoa HOM05D005467 ORTHO05D006523 1.4e-139 500.4 437 60.0
unitig_21.g20024 Utricularia gibba HOM05D000903 ORTHO05D000731 5.7e-125 451.8 403 57.6
SMO172G0164 Selaginella moellendorffii HOM05D005467 ORTHO05D006523 7.7e-122 441.4 413 54.7
Sc04g0005780 Simmondsia chinensis HOM05D005467 ORTHO05D006523 2.2e-121 439.9 267 80.5
Gohir.D04G138566 Gossypium hirsutum HOM05D005467 ORTHO05D006523 1.4e-120 437.2 279 77.4
Cc11_g09130 Coffea canephora HOM05D005467 ORTHO05D006523 3.2e-120 436.0 277 77.3
Nitab4.5_0004524g0030 Nicotiana tabacum HOM05D005467 ORTHO05D006523 3.2e-120 436.0 291 73.5
Lsat_1_v5_gn_3_54101 Lactuca sativa HOM05D005467 ORTHO05D006523 5.3e-115 418.7 276 75.4
ATR0041G011 Amborella trichopoda HOM05D005467 ORTHO05D006523 7.7e-114 414.8 426 49.3
Nitab4.5_0000293g0010 Nicotiana tabacum HOM05D005467 ORTHO05D006523 2.5e-112 409.8 407 52.1
AagrBONN_evm.TU.Sc2ySwM_344.4352 Anthoceros agrestis HOM05D005467 ORTHO05D006523 3.2e-112 409.5 415 51.8
Nitab4.5_0000350g0270 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.2e-103 380.9 430 47.7
Pp3c22_2590 Physcomitrium patens HOM05D005467 ORTHO05D006523 2.7e-103 379.8 417 48.0
Peaxi162Scf00159g00824 Petunia axillaris HOM05D005467 ORTHO05D006523 1.6e-95 354.0 554 40.1
HPP92_008650 Vanilla planifolia HOM05D005467 ORTHO05D006523 6.8e-94 348.6 276 62.7
Oeu064202.3 Olea europaea HOM05D005467 ORTHO05D006523 4.4e-93 345.9 264 68.2
Sopen02g012020 Solanum pennellii HOM05D005467 ORTHO05D006523 7.7e-90 335.1 426 41.8
Dinv04888 Davidia involucrata HOM05D005467 ORTHO05D006523 5.0e-89 332.4 195 85.1
Zm00001eb341680 Zea mays HOM05D005467 ORTHO05D006523 8.6e-89 331.6 315 54.3
Sopen02g012000 Solanum pennellii HOM05D005467 ORTHO05D006523 1.5e-88 330.9 415 42.4
CDE06G2222 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 1.2e-87 327.8 231 71.9
PGSC0003DMG400029189 Solanum tuberosum HOM05D005467 ORTHO05D006523 8.0e-87 325.1 429 41.5
SEGI_12457 Sequoiadendron giganteum HOM05D005467 ORTHO05D006523 1.0e-86 324.7 233 67.8
Peaxi162Scf00159g00823 Petunia axillaris HOM05D005467 ORTHO05D006523 1.4e-86 324.3 461 41.4
PGSC0003DMG400017873 Solanum tuberosum HOM05D005467 ORTHO05D006523 1.2e-85 321.2 417 41.2
Sopen02g012010 Solanum pennellii HOM05D005467 ORTHO05D006523 3.4e-85 319.7 425 41.4
CBR_g17592 Chara braunii HOM05D005467 ORTHO05D006523 2.8e-84 316.6 409 43.3
Solyc02g038680.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 4.4e-77 292.7 414 40.1
FAN17G2566 Fragaria x ananassa HOM05D005467 ORTHO05D006523 1.5e-72 277.7 190 72.1
Solyc02g038670.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 4.6e-66 256.1 430 36.0
Haze_11049 Corylus avellana HOM05D005467 ORTHO05D006523 1.2e-63 248.1 169 75.7
MCO12G173 Micromonas commoda HOM05D005467 ORTHO05D006523 1.2e-63 248.1 365 40.8
Solyc02g038650.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.4e-62 244.6 353 38.5
Cc11_g09120 Coffea canephora HOM05D005467 ORTHO05D006523 6.4e-60 235.7 151 74.8
PRCOL_00002109 Prasinoderma coloniale HOM05D005467 ORTHO05D006523 6.6e-57 225.7 390 37.2
Peaxi162Scf00205g00812 Petunia axillaris HOM05D005467 ORTHO05D006523 1.7e-52 211.1 435 33.6
Haze_11050 Corylus avellana HOM05D005467 ORTHO05D006523 1.7e-49 201.1 200 55.5
Sopen02g012080 Solanum pennellii HOM05D005467 ORTHO05D006523 5.1e-49 199.5 396 32.3
PGSC0003DMG400029188 Solanum tuberosum HOM05D005467 ORTHO05D006523 4.3e-48 196.4 322 36.3
Solyc02g038660.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 8.4e-44 182.2 327 35.5
Lsat_1_v5_gn_3_86380 Lactuca sativa HOM05D005467 ORTHO05D006523 1.9e-43 181.0 117 79.5
Nitab4.5_0004524g0050 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.7e-41 174.5 125 71.2
Sed0021963 Sechium edule HOM05D005467 ORTHO05D006523 4.3e-40 169.9 268 40.7
Lsat_1_v5_gn_3_107041 Lactuca sativa HOM05D005467 ORTHO05D006523 2.1e-39 167.5 242 45.5
RcHm_v2.0_Chr7g0235151 Rosa chinensis HOM05D005467 ORTHO05D006523 2.4e-38 164.1 104 78.8
FAN17G1461 Fragaria x ananassa HOM05D005467 ORTHO05D006523 5.8e-37 159.5 112 69.6
PGSC0003DMG400023165 Solanum tuberosum HOM05D005467 ORTHO05D006523 3.2e-35 153.7 182 43.4
Nitab4.5_0004367g0150 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.8e-33 147.9 133 52.6
Nitab4.5_0002820g0080 Nicotiana tabacum HOM05D005467 ORTHO05D006523 7.4e-32 142.5 125 53.6
Nitab4.5_0019054g0020 Nicotiana tabacum HOM05D005467 ORTHO05D006523 6.2e-31 139.4 274 33.6
Lsat_1_v5_gn_7_58700 Lactuca sativa HOM05D005467 ORTHO05D006523 8.1e-31 139.0 107 67.3
Lsat_1_v5_gn_4_96160 Lactuca sativa HOM05D005467 ORTHO05D006523 1.4e-30 138.3 107 66.4
PGSC0003DMG400017876 Solanum tuberosum HOM05D005467 ORTHO05D006523 5.3e-30 136.3 401 27.4
Nitab4.5_0002820g0070 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.6e-26 124.8 146 45.9
RcHm_v2.0_Chr3g0493761 Rosa chinensis HOM05D005467 ORTHO05D006523 7.9e-26 122.5 85 72.9
Solyc02g038700.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.1e-24 118.6 257 30.4
Nitab4.5_0000688g0010 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.8e-22 111.3 169 40.8
Phvul.008G137000 Phaseolus vulgaris HOM05D005467 ORTHO05D006523 6.9e-22 109.4 55 87.3
Lsat_1_v5_gn_6_22900 Lactuca sativa HOM05D005467 ORTHO05D006523 1.0e-20 105.5 76 69.7
PGSC0003DMG400038827 Solanum tuberosum HOM05D005467 ORTHO05D006523 1.1e-16 92.0 104 39.4
CDE07G1108 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 2.5e-16 90.9 80 52.5
PGSC0003DMG400017875 Solanum tuberosum HOM05D005467 ORTHO05D006523 7.4e-16 89.4 77 53.2
Cre12.g549600 Chlamydomonas reinhardtii HOM05D005467 ORTHO05D006523 2.5e-11 74.3 261 27.6
MD05G1282800 Malus domestica HOM05D005467 ORTHO05D006523 3.9e-09 67.0 170 31.2
Lsat_1_v5_gn_9_124480 Lactuca sativa HOM05D001159 ORTHO05D001712 9.7e-08 62.4 38 73.7
SEGI_39271 Sequoiadendron giganteum HOM05D005467 ORTHO05D006523 8.2e-07 59.3 41 65.9
CDE07G1559 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 6.9e-06 56.2 49 51.0


User provided reference genes

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