Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047897 Camellia sinensis var. sinensis HOM05D000026 ORTHO05D008596 2.1e-114 415.6 199 100.0
vmacro12664 Vaccinium macrocarpon HOM05D000026 ORTHO05D008596 1.2e-96 356.7 196 84.7
Hma1.2p1_0101F.1_g049143 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 5.3e-89 331.3 191 79.6
Hma1.2p1_2584F.1_g324880 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 5.3e-89 331.3 191 79.6
CANSAT56G3067 Cannabis sativa HOM05D000026 ORTHO05D008596 3.4e-88 328.6 199 75.9
Lsat_1_v5_gn_4_30860 Lactuca sativa HOM05D000026 ORTHO05D008596 5.8e-88 327.8 200 77.5
Lj7A496T103 Lonicera japonica HOM05D000026 ORTHO05D008596 7.6e-88 327.4 195 77.9
Thecc.01G339500 Theobroma cacao HOM05D000026 ORTHO05D008596 7.6e-88 327.4 199 77.4
RcHm_v2.0_Chr1g0360221 Rosa chinensis HOM05D000026 ORTHO05D008596 2.2e-87 325.9 201 75.1
Cc02_g39620 Coffea canephora HOM05D000026 ORTHO05D008596 6.4e-87 324.3 197 73.6
FAN06G2200 Fragaria x ananassa HOM05D000026 ORTHO05D008596 6.4e-87 324.3 199 73.9
Gohir.A07G136500 Gossypium hirsutum HOM05D000026 ORTHO05D008596 8.4e-87 323.9 200 77.0
GSVIVG01027181001 Vitis vinifera HOM05D000026 ORTHO05D008596 8.4e-87 323.9 199 76.4
FAN10G3002 Fragaria x ananassa HOM05D000026 ORTHO05D008596 1.1e-86 323.6 201 73.6
FvH4_7g16970 Fragaria vesca HOM05D000026 ORTHO05D008596 3.2e-86 322.0 201 73.6
FAN06G4713 Fragaria x ananassa HOM05D000026 ORTHO05D008596 3.2e-86 322.0 201 73.6
Cfa003780 Carpinus fangiana HOM05D000026 ORTHO05D008596 5.5e-86 321.2 199 74.9
Gohir.D07G141900 Gossypium hirsutum HOM05D000026 ORTHO05D008596 7.1e-86 320.9 200 76.0
Gorai.001G153500 Gossypium raimondii HOM05D000026 ORTHO05D008596 7.1e-86 320.9 200 76.0
QL08p045855 Quercus lobata HOM05D000026 ORTHO05D008596 7.9e-85 317.4 199 75.9
EL10Ac1g00239 Beta vulgaris HOM05D000026 ORTHO05D008596 3.9e-84 315.1 199 73.9
Cpa.g.sc96.56 Carica papaya HOM05D000026 ORTHO05D008596 5.1e-84 314.7 197 73.1
DCAR_006978 Daucus carota HOM05D000026 ORTHO05D008596 6.7e-84 314.3 197 73.6
HanXRQChr16g0524761 Helianthus annuus HOM05D000026 ORTHO05D008596 6.7e-84 314.3 200 74.5
Potri.014G100700 Populus trichocarpa HOM05D000026 ORTHO05D008596 1.9e-83 312.8 199 74.9
TAR629G1880 Trochodendron aralioides HOM05D000026 ORTHO05D008596 4.3e-83 311.6 199 72.4
Manes.05G020900 Manihot esculenta HOM05D000026 ORTHO05D008596 5.6e-83 311.2 199 71.9
Atru.chr5.703 Acer truncatum HOM05D000026 ORTHO05D008596 6.2e-82 307.8 199 74.4
FAN01G2684 Fragaria x ananassa HOM05D000026 ORTHO05D008596 6.2e-82 307.8 219 67.1
Potri.002G173800 Populus trichocarpa HOM05D000026 ORTHO05D008596 6.2e-82 307.8 200 72.5
TWI59G0194 Tripterygium wilfordii HOM05D000026 ORTHO05D008596 8.1e-82 307.4 200 72.0
TWI23G0686 Tripterygium wilfordii HOM05D000026 ORTHO05D008596 1.4e-81 306.6 200 72.0
MBI04_g28825_MAGBIO Magnolia biondii HOM05D000026 ORTHO05D008596 2.4e-81 305.8 197 71.1
PGR031G0964 Punica granatum HOM05D000026 ORTHO05D008596 4.0e-81 305.1 197 71.6
Prupe.2G192000 Prunus persica HOM05D000026 ORTHO05D008596 5.3e-81 304.7 201 70.1
ECA234G0680 Erigeron canadensis HOM05D000026 ORTHO05D008596 9.0e-81 303.9 201 72.1
Nitab4.5_0000258g0260 Nicotiana tabacum HOM05D000026 ORTHO05D008596 2.6e-80 302.4 197 69.0
Aqoxy5G04296 Aquilegia oxysepala HOM05D000026 ORTHO05D008596 2.2e-79 299.3 200 69.5
arahy.Tifrunner.gnm1.ann1.HRQ3AE Arachis hypogaea HOM05D000026 ORTHO05D008596 2.9e-79 298.9 195 70.8
MD01G1084300 Malus domestica HOM05D000026 ORTHO05D008596 3.8e-79 298.5 201 67.7
MSTRG.28272 Avicennia marina HOM05D000026 ORTHO05D008596 1.9e-78 296.2 193 71.0
Eucgr.D02387 Eucalyptus grandis HOM05D000026 ORTHO05D008596 2.5e-78 295.8 197 70.1
Hund27184 Selenicereus undatus HOM05D000026 ORTHO05D008596 2.5e-78 295.8 192 68.8
TPR.G20231 Trifolium pratense HOM05D000026 ORTHO05D008596 7.1e-78 294.3 197 69.5
arahy.Tifrunner.gnm1.ann1.CN1679 Arachis hypogaea HOM05D000026 ORTHO05D008596 2.1e-77 292.7 195 69.7
Lj3g0003520 Lotus japonicus HOM05D000026 ORTHO05D008596 2.1e-77 292.7 199 68.8
Duzib133G0719 Durio zibethinus HOM05D000026 ORTHO05D008596 2.7e-77 292.4 166 81.9
PSO063G7217 Papaver somniferum HOM05D000026 ORTHO05D008596 7.9e-77 290.8 199 67.8
Lalb_Chr10g0100681 Lupinus albus HOM05D000026 ORTHO05D008596 1.0e-76 290.4 199 68.3
Glyma.16G023100 Glycine max HOM05D000026 ORTHO05D008596 1.3e-76 290.0 192 70.8
SGA_v2.0_scaffold232G43545 Striga asiatica HOM05D000026 ORTHO05D008596 3.9e-76 288.5 193 68.4
VMungo0331G1134 Vigna mungo HOM05D000026 ORTHO05D008596 3.9e-76 288.5 199 67.3
Ciclev10022329m.g Citrus clementina HOM05D000026 ORTHO05D008596 5.1e-76 288.1 199 67.3
Medtr8g027365 Medicago truncatula HOM05D000026 ORTHO05D008596 5.1e-76 288.1 199 68.3
Phvul.010G115400 Phaseolus vulgaris HOM05D000026 ORTHO05D008596 6.7e-76 287.7 199 67.3
AL4G46010 Arabidopsis lyrata HOM05D000026 ORTHO05D008596 1.9e-75 286.2 199 65.8
Ca_23515_v3 Cicer arietinum L. HOM05D000026 ORTHO05D008596 3.3e-75 285.4 197 67.0
AT2G46580 Arabidopsis thaliana HOM05D000026 ORTHO05D008596 5.7e-75 284.6 199 65.8
Dinv32607 Davidia involucrata HOM05D000026 ORTHO05D008596 7.4e-75 284.3 156 84.0
Carub.0004s2930 Capsella rubella HOM05D000026 ORTHO05D008596 9.6e-75 283.9 199 65.3
Solyc05g050530.3 Solanum lycopersicum HOM05D000026 ORTHO05D008596 9.6e-75 283.9 186 69.4
THA.LOC104827623 Tarenaya hassleriana HOM05D000026 ORTHO05D008596 9.6e-75 283.9 200 67.0
FAN10G2309 Fragaria x ananassa HOM05D000026 ORTHO05D000127 1.6e-74 283.1 169 75.1
CAN.G360.5 Capsicum annuum HOM05D000026 ORTHO05D008596 2.1e-74 282.7 184 70.1
CARHR141930 Cardamine hirsuta HOM05D000026 ORTHO05D008596 2.1e-74 282.7 199 65.3
Sopen05g028950 Solanum pennellii HOM05D000026 ORTHO05D008596 3.7e-74 282.0 182 70.3
COL.COLO4_06235 Corchorus olitorius HOM05D000026 ORTHO05D008596 8.2e-74 280.8 166 78.3
Thhalv10001639m.g Eutrema salsugineum HOM05D000026 ORTHO05D008596 1.8e-73 279.6 199 65.3
MELO3C006011.2 Cucumis melo HOM05D000026 ORTHO05D008596 3.1e-73 278.9 199 64.3
BcaC02g07019 Brassica carinata HOM05D000026 ORTHO05D008596 5.3e-73 278.1 199 63.3
Sp4g28630 Schrenkiella parvula HOM05D000026 ORTHO05D008596 1.2e-72 276.9 195 66.7
AUR62004514 Chenopodium quinoa HOM05D000026 ORTHO05D008596 1.5e-72 276.6 169 72.8
Sed0016971 Sechium edule HOM05D000026 ORTHO05D008596 2.0e-72 276.2 193 65.8
C04p72250 Brassica napus HOM05D000026 ORTHO05D008596 2.6e-72 275.8 199 62.8
Migut.N01531 Erythranthe guttata HOM05D000026 ORTHO05D008596 2.6e-72 275.8 196 67.3
CsaV3_3G007930 Cucumis sativus L. HOM05D000026 ORTHO05D008596 5.9e-72 274.6 197 62.9
Zm00001eb001050 Zea mays HOM05D000026 ORTHO05D008596 1.7e-71 273.1 196 62.8
Actinidia28110 Actinidia chinensis HOM05D000026 ORTHO05D008596 2.2e-71 272.7 166 78.9
Os03g0115500 Oryza sativa ssp. japonica HOM05D000026 ORTHO05D008596 3.8e-71 271.9 193 64.8
Rhsim01G0174600 Rhododendron simsii HOM05D000026 ORTHO05D008596 5.0e-71 271.6 195 68.2
BcaC02g07042 Brassica carinata HOM05D000026 ORTHO05D008596 6.5e-71 271.2 196 64.8
A04p34480 Brassica napus HOM05D000026 ORTHO05D008596 8.5e-71 270.8 199 62.3
BraA04t18906Z Brassica rapa HOM05D000026 ORTHO05D008596 8.5e-71 270.8 199 62.3
Nitab4.5_0003865g0100 Nicotiana tabacum HOM05D000026 ORTHO05D008596 2.1e-69 266.2 197 63.5
CDE02G1978 Ceratophyllum demersum HOM05D000026 ORTHO05D008596 1.3e-68 263.5 192 62.5
unitig_21.g20560 Utricularia gibba HOM05D000026 ORTHO05D008596 3.0e-68 262.3 197 63.5
SEGI_21315 Sequoiadendron giganteum HOM05D000026 ORTHO05D008596 1.9e-67 259.6 195 56.9
PGSC0003DMG400007008 Solanum tuberosum HOM05D000026 ORTHO05D008596 9.7e-67 257.3 162 72.2
CiPaw.01G078200 Carya illinoinensis HOM05D000026 ORTHO05D008596 7.7e-64 247.7 167 68.9
FAN03G0355 Fragaria x ananassa HOM05D000026 ORTHO05D008596 8.5e-63 244.2 166 69.3
Hma1.2p1_0101F.1_g049146 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 3.2e-62 242.3 133 81.2
Hma1.2p1_2584F.1_g324890 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 3.2e-62 242.3 133 81.2
PSO170G4931 Papaver somniferum HOM05D000026 ORTHO05D008596 2.7e-61 239.2 199 60.8
Aa31LG1G27980 Aethionema arabicum HOM05D000026 ORTHO05D008596 3.0e-60 235.7 188 60.1
BcaNung06661 Brassica carinata HOM05D000026 ORTHO05D008596 8.8e-60 234.2 200 57.5
BolC4t28712H Brassica oleracea HOM05D000026 ORTHO05D008596 1.5e-56 223.4 221 49.8
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 1.4e-54 216.9 200 51.0
Mapoly0085s0082 Marchantia polymorpha HOM05D000026 ORTHO05D008596 2.7e-53 212.6 201 49.8
Pp3c7_90 Physcomitrium patens HOM05D000026 ORTHO05D008596 4.7e-53 211.8 195 47.7
Nn1g00327 Nelumbo nucifera HOM05D000026 ORTHO05D008596 7.9e-53 211.1 192 56.2
Oeu004961.1 Olea europaea HOM05D000026 ORTHO05D008596 1.0e-52 210.7 132 70.5
Peaxi162Scf00716g00425 Petunia axillaris HOM05D000026 ORTHO05D008596 2.8e-50 202.6 195 53.8
SMO119G0236 Selaginella moellendorffii HOM05D000026 ORTHO05D008596 3.7e-50 202.2 199 48.7
Sabra14G0074100 Salix brachista HOM05D000026 ORTHO05D008596 1.1e-46 190.7 173 56.1
Sc01g0002470 Simmondsia chinensis HOM05D000026 ORTHO05D008596 2.4e-41 172.9 107 72.0
ClCG05G000710 Citrullus lanatus HOM05D000026 ORTHO05D008596 1.2e-40 170.6 271 39.5
Hma1.2p1_0101F.1_g049160 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 3.5e-40 169.1 92 84.8
Actinidia28403 Actinidia chinensis HOM05D000026 ORTHO05D008596 1.0e-36 157.5 81 86.4
CBR_g3312 Chara braunii HOM05D000026 ORTHO05D008596 1.4e-33 147.1 216 37.0
AUR62022739 Chenopodium quinoa HOM05D000026 ORTHO05D008596 1.8e-33 146.7 92 73.9
HPP92_015098 Vanilla planifolia HOM05D000026 ORTHO05D008596 2.5e-30 136.3 111 58.6
ATR0757G161 Amborella trichopoda HOM05D000026 ORTHO05D008596 2.8e-26 122.9 77 70.1
Sabra02G0139600 Salix brachista HOM05D000026 ORTHO05D008596 3.8e-23 112.5 70 74.3
MCO05G651 Micromonas commoda HOM05D000026 ORTHO05D008596 2.5e-22 109.8 185 34.1
PRCOL_00000497 Prasinoderma coloniale HOM05D000026 ORTHO05D008596 5.9e-16 88.6 230 30.9
Haze_15680 Corylus avellana HOM05D000026 ORTHO05D008596 3.0e-15 86.3 47 87.2
Zm00001eb244850 Zea mays HOM05D017471 ORTHO05D012887 5.0e-15 85.5 58 67.2
Cre02.g095100 Chlamydomonas reinhardtii HOM05D000026 ORTHO05D008596 2.5e-14 83.2 137 34.3
Zm00001eb123990 Zea mays HOM05D000026 ORTHO05D012887 7.3e-14 81.6 57 66.7
Hund19453 Selenicereus undatus HOM05D004066 ORTHO05D008596 1.4e-12 77.4 53 67.9
TAR636G3419 Trochodendron aralioides HOM05D000026 ORTHO05D008596 4.0e-12 75.9 62 58.1


User provided reference genes

Program Settings