Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047891 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 1.9e-188 662.5 382 100.0
Actinidia06932 Actinidia chinensis HOM05D006549 ORTHO05D008080 4.5e-145 518.5 363 82.6
Actinidia16353 Actinidia chinensis HOM05D006549 ORTHO05D008080 4.2e-143 511.9 362 80.7
Rhsim13G0217400 Rhododendron simsii HOM05D002345 ORTHO05D002391 2.8e-139 499.2 355 78.9
vmacro04120 Vaccinium macrocarpon HOM05D006549 ORTHO05D008080 1.1e-135 487.3 352 75.0
Dinv22152 Davidia involucrata HOM05D006549 ORTHO05D008080 1.6e-134 483.4 366 78.1
CiPaw.13G153800 Carya illinoinensis HOM05D006549 ORTHO05D008080 4.6e-126 455.3 372 68.5
Dinv36213 Davidia involucrata HOM05D006549 ORTHO05D008080 6.5e-120 434.9 371 64.4
Duzib170G0947 Durio zibethinus HOM05D006549 ORTHO05D008080 4.2e-119 432.2 368 69.8
GSVIVG01031548001 Vitis vinifera HOM05D006549 ORTHO05D008080 5.5e-119 431.8 386 64.5
Gorai.006G126000 Gossypium raimondii HOM05D006549 ORTHO05D008080 8.8e-117 424.5 368 68.8
FvH4_3g28330 Fragaria vesca HOM05D006549 ORTHO05D008080 1.1e-116 424.1 378 64.0
Nitab4.5_0006878g0020 Nicotiana tabacum HOM05D006549 ORTHO05D008080 1.5e-116 423.7 375 62.1
Potri.001G254600 Populus trichocarpa HOM05D006549 ORTHO05D008080 1.5e-116 423.7 367 64.6
FAN11G3700 Fragaria x ananassa HOM05D006549 ORTHO05D008080 2.6e-116 422.9 378 64.0
Cc01_g06100 Coffea canephora HOM05D006549 ORTHO05D008080 3.3e-116 422.5 373 60.1
Gohir.D09G108300 Gossypium hirsutum HOM05D006549 ORTHO05D008080 4.4e-116 422.2 368 68.5
Gohir.A09G111700 Gossypium hirsutum HOM05D006549 ORTHO05D008080 1.7e-115 420.2 368 67.1
Thecc.09G240800 Theobroma cacao HOM05D006549 ORTHO05D008080 1.7e-115 420.2 367 65.9
Manes.14G005500 Manihot esculenta HOM05D006549 ORTHO05D008080 4.8e-115 418.7 382 65.4
Oeu025891.1 Olea europaea HOM05D006549 ORTHO05D008080 2.4e-114 416.4 368 64.9
FAN21G3651 Fragaria x ananassa HOM05D006549 ORTHO05D008080 4.1e-114 415.6 383 63.4
Nn7g36445 Nelumbo nucifera HOM05D006549 ORTHO05D008080 7.0e-114 414.8 396 60.9
Nitab4.5_0002726g0080 Nicotiana tabacum HOM05D006549 ORTHO05D008080 2.0e-113 413.3 373 58.7
CAN.G633.4 Capsicum annuum HOM05D006549 ORTHO05D008080 2.6e-113 412.9 373 61.7
MD03G1170300 Malus domestica HOM05D006549 ORTHO05D008080 3.5e-113 412.5 394 64.0
Sc09g0000890 Simmondsia chinensis HOM05D006549 ORTHO05D008080 3.5e-113 412.5 385 61.3
Ciclev10015584m.g Citrus clementina HOM05D006549 ORTHO05D008080 5.9e-113 411.8 377 61.0
Potri.009G049700 Populus trichocarpa HOM05D006549 ORTHO05D008080 7.7e-113 411.4 363 63.4
MD11G1187800 Malus domestica HOM05D006549 ORTHO05D008080 5.0e-112 408.7 378 64.3
PGR102G0709 Punica granatum HOM05D006549 ORTHO05D008080 5.0e-112 408.7 371 64.7
DCAR_000660 Daucus carota HOM05D006549 ORTHO05D008080 8.5e-112 407.9 402 58.5
RcHm_v2.0_Chr5g0051211 Rosa chinensis HOM05D006549 ORTHO05D008080 7.2e-111 404.8 378 63.8
MSTRG.17620 Avicennia marina HOM05D006549 ORTHO05D008080 3.6e-110 402.5 361 62.9
TWI39G1226 Tripterygium wilfordii HOM05D006549 ORTHO05D008080 3.6e-110 402.5 363 66.7
CANSAT54G0570 Cannabis sativa HOM05D006549 ORTHO05D008080 6.1e-110 401.7 372 64.0
Solyc11g065180.2 Solanum lycopersicum HOM05D006549 ORTHO05D008080 8.0e-110 401.4 360 63.1
PGSC0003DMG400031244 Solanum tuberosum HOM05D006549 ORTHO05D008080 8.0e-110 401.4 360 61.4
Migut.N02355 Erythranthe guttata HOM05D006549 ORTHO05D008080 1.0e-109 401.0 358 63.4
ClCG03G013060 Citrullus lanatus HOM05D006549 ORTHO05D008080 1.8e-109 400.2 372 65.3
Sopen11g024900 Solanum pennellii HOM05D006549 ORTHO05D008080 3.0e-109 399.4 362 62.7
Glyma.11G015900 Glycine max HOM05D006549 ORTHO05D008080 4.4e-108 395.6 369 61.5
CsaV3_1G043000 Cucumis sativus L. HOM05D006549 ORTHO05D008080 1.3e-107 394.0 376 63.6
Prupe.4G256800 Prunus persica HOM05D006549 ORTHO05D008080 1.3e-107 394.0 449 54.3
THA.LOC104811185 Tarenaya hassleriana HOM05D006549 ORTHO05D008080 2.2e-107 393.3 361 66.2
COL.COLO4_36476 Corchorus olitorius HOM05D006549 ORTHO05D008080 2.8e-107 392.9 367 64.9
ECA238G1745 Erigeron canadensis HOM05D006549 ORTHO05D008080 2.8e-107 392.9 359 60.4
Aqoxy1G00310 Aquilegia oxysepala HOM05D006549 ORTHO05D008080 4.8e-107 392.1 358 61.5
Haze_23190 Corylus avellana HOM05D006549 ORTHO05D008080 8.2e-107 391.3 438 56.2
Sabra09G0036200 Salix brachista HOM05D006549 ORTHO05D008080 1.4e-106 390.6 419 56.1
Aa31LG3G14820 Aethionema arabicum HOM05D006549 ORTHO05D008080 2.0e-105 386.7 377 60.2
CARHR200690 Cardamine hirsuta HOM05D006549 ORTHO05D008080 2.6e-105 386.3 361 61.2
Sabra16G0155200 Salix brachista HOM05D006549 ORTHO05D008080 5.9e-105 385.2 425 55.3
VMungo1215G3210 Vigna mungo HOM05D006549 ORTHO05D008080 5.9e-105 385.2 373 60.9
Atru.chr3.2633 Acer truncatum HOM05D006549 ORTHO05D008080 1.0e-104 384.4 345 65.8
QL01p018141 Quercus lobata HOM05D006549 ORTHO05D008080 1.0e-104 384.4 389 60.2
Phvul.002G033900 Phaseolus vulgaris HOM05D006549 ORTHO05D008080 1.3e-104 384.0 373 59.5
Glyma.01G226800 Glycine max HOM05D006549 ORTHO05D008080 1.7e-104 383.6 377 59.7
Lsat_1_v5_gn_2_29261 Lactuca sativa HOM05D006549 ORTHO05D008080 2.9e-104 382.9 365 59.7
Medtr5g009010 Medicago truncatula HOM05D006549 ORTHO05D008080 3.8e-104 382.5 367 57.5
arahy.Tifrunner.gnm1.ann1.2W4GIE Arachis hypogaea HOM05D006549 ORTHO05D008080 5.0e-104 382.1 368 60.6
Sed0027042 Sechium edule HOM05D006549 ORTHO05D008080 5.0e-104 382.1 374 61.2
Eucgr.B03712 Eucalyptus grandis HOM05D006549 ORTHO05D008080 8.5e-104 381.3 370 63.0
BraA03t09898Z Brassica rapa HOM05D006549 ORTHO05D008080 5.5e-103 378.6 359 60.2
C09p64480 Brassica napus HOM05D006549 ORTHO05D008080 7.2e-103 378.3 362 58.0
BolC9t59282H Brassica oleracea HOM05D006549 ORTHO05D008080 7.2e-103 378.3 362 58.0
Hund07453 Selenicereus undatus HOM05D006549 ORTHO05D008080 2.1e-102 376.7 369 59.6
BolC3t13156H Brassica oleracea HOM05D006549 ORTHO05D008080 4.7e-102 375.6 359 61.3
BraA10t44605Z Brassica rapa HOM05D006549 ORTHO05D008080 6.1e-102 375.2 362 57.7
TPR.G38023 Trifolium pratense HOM05D006549 ORTHO05D008080 6.1e-102 375.2 371 58.8
HanXRQChr14g0433001 Helianthus annuus HOM05D006549 ORTHO05D008080 1.0e-101 374.4 360 57.8
Peaxi162Scf00004g03918 Petunia axillaris HOM05D006549 ORTHO05D008080 1.0e-101 374.4 358 56.1
unitig_27.g25003 Utricularia gibba HOM05D006549 ORTHO05D008080 1.4e-101 374.0 361 57.1
arahy.Tifrunner.gnm1.ann1.9560XR Arachis hypogaea HOM05D006549 ORTHO05D008080 1.5e-100 370.5 361 60.1
AL6G23210 Arabidopsis lyrata HOM05D006549 ORTHO05D008080 2.0e-100 370.2 361 62.0
AUR62000165 Chenopodium quinoa HOM05D006549 ORTHO05D008080 2.6e-100 369.8 368 55.2
AUR62039846 Chenopodium quinoa HOM05D006549 ORTHO05D008080 1.7e-99 367.1 368 57.3
EL10Ac4g10185 Beta vulgaris HOM05D006549 ORTHO05D008080 3.7e-99 365.9 371 58.0
Lju41A40T23 Lonicera japonica HOM05D006549 ORTHO05D008080 1.1e-98 364.4 324 65.4
A03p05610 Brassica napus HOM05D006549 ORTHO05D008080 5.4e-98 362.1 345 60.9
AT5G12410 Arabidopsis thaliana HOM05D006549 ORTHO05D008080 7.0e-98 361.7 382 59.7
Psat2g186960 Pisum sativum HOM05D000745 ORTHO05D000641 7.0e-98 361.7 367 58.9
Lalb_Chr09g0320561 Lupinus albus HOM05D006549 ORTHO05D008080 1.6e-97 360.5 391 54.2
ATR0721G160 Amborella trichopoda HOM05D006549 ORTHO05D008080 2.7e-97 359.8 366 54.1
A10p25410 Brassica napus HOM05D006549 ORTHO05D008080 2.7e-97 359.8 363 57.3
Carub.0006s1091 Capsella rubella HOM05D006549 ORTHO05D008080 1.7e-96 357.1 362 61.0
SGA_v2.0_scaffold42G16082 Striga asiatica HOM05D006549 ORTHO05D008080 1.7e-96 357.1 364 54.9
MBI13_g04769_MAGBIO Magnolia biondii HOM05D006549 ORTHO05D008080 2.9e-96 356.3 405 51.9
Sp6g31230 Schrenkiella parvula HOM05D006549 ORTHO05D008080 3.8e-96 355.9 394 54.8
Os11g0568600 Oryza sativa ssp. japonica HOM05D006549 ORTHO05D008080 2.5e-95 353.2 374 51.3
CDE08G0181 Ceratophyllum demersum HOM05D006549 ORTHO05D008080 1.2e-94 350.9 360 54.2
Thhalv10013724m.g Eutrema salsugineum HOM05D006549 ORTHO05D008080 1.6e-94 350.5 394 54.1
Ca_24492_v3 Cicer arietinum L. HOM05D000745 ORTHO05D000641 3.6e-94 349.4 359 59.6
Zm00001eb200070 Zea mays HOM05D006549 ORTHO05D008080 2.2e-91 340.1 373 51.5
QL01p018092 Quercus lobata HOM05D006549 ORTHO05D008080 4.9e-91 339.0 343 59.5
PSO384G3463 Papaver somniferum HOM05D006549 ORTHO05D008080 1.4e-90 337.4 357 61.9
PSO339G6663 Papaver somniferum HOM05D006549 ORTHO05D008080 7.0e-90 335.1 362 61.6
C03p06560 Brassica napus HOM05D006549 ORTHO05D008080 1.6e-89 334.0 363 52.6
LjContig00222g0000121 Lotus japonicus HOM05D006549 ORTHO05D008080 3.8e-88 329.3 448 47.5
BcaB01g05403 Brassica carinata HOM05D006549 ORTHO05D008080 9.5e-87 324.7 409 48.2
Oeu061298.1 Olea europaea HOM05D006549 ORTHO05D008080 2.3e-85 320.1 314 60.5
Ah.06g193800 Amaranthus hybridus HOM05D006549 ORTHO05D008080 7.3e-79 298.5 322 54.7
BcaB08g37001 Brassica carinata HOM05D006549 ORTHO05D008080 5.8e-76 288.9 360 47.8
SEGI_14205 Sequoiadendron giganteum HOM05D006549 ORTHO05D008080 7.5e-76 288.5 366 47.5
FAN16G0297 Fragaria x ananassa HOM05D006549 ORTHO05D008080 4.6e-65 252.7 168 75.0
Hma1.2p1_1043F.1_g251200 Hydrangea macrophylla HOM05D006549 ORTHO05D008080 2.3e-61 240.4 135 86.7
TAR633G0410 Trochodendron aralioides HOM05D006549 ORTHO05D008080 3.4e-60 236.5 141 82.3
Duzib168G0228 Durio zibethinus HOM05D006549 ORTHO05D008080 7.6e-52 208.8 285 55.1
SHI46597 Sapria himalayana HOM05D006549 ORTHO05D008080 7.1e-50 202.2 342 37.7
Mapoly0091s0083 Marchantia polymorpha HOM05D006549 ORTHO05D008080 1.9e-47 194.1 370 35.1
SMO013G0006 Selaginella moellendorffii HOM05D006549 ORTHO05D008080 3.3e-47 193.4 366 34.2
AagrBONN_evm.TU.Sc2ySwM_228.1610 Anthoceros agrestis HOM05D006549 ORTHO05D008080 9.6e-47 191.8 361 34.1
Pp3c3_2270 Physcomitrium patens HOM05D006549 ORTHO05D008080 1.1e-42 178.3 360 33.6
Cc01_g06170 Coffea canephora HOM05D006549 ORTHO05D008080 6.6e-40 169.1 110 76.4
CBR_g300 Chara braunii HOM05D006549 ORTHO05D008080 8.1e-30 135.6 228 34.2
MELO3C015170.2 Cucumis melo HOM05D006549 ORTHO05D008080 7.6e-28 129.0 83 73.5
PRCOL_00001563 Prasinoderma coloniale HOM05D006549 ORTHO05D008080 2.5e-26 124.0 181 39.2
HPP92_011577 Vanilla planifolia HOM05D006549 ORTHO05D008080 2.1e-25 120.9 210 38.1
MELO3C029487.2 Cucumis melo HOM05D006549 ORTHO05D008080 1.4e-21 108.2 64 81.2
BolC3t13160H Brassica oleracea HOM05D006549 ORTHO05D008080 1.0e-19 102.1 76 63.2
Cpa.g.sc84.3 Carica papaya HOM05D006549 ORTHO05D008080 1.3e-19 101.7 56 87.5
MCO09G159 Micromonas commoda HOM05D006549 ORTHO05D008080 1.7e-19 101.3 191 31.9
CSS0036252 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 8.4e-19 99.0 64 79.7
Cre14.g629550 Chlamydomonas reinhardtii HOM05D006549 ORTHO05D008080 7.2e-18 95.9 182 32.4
Cpa.g.c41750 Carica papaya HOM05D006549 ORTHO05D008080 4.8e-14 83.2 50 76.0


User provided reference genes

Program Settings