Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047881 Camellia sinensis var. sinensis HOM05D001267 ORTHO05D113445 1.7e-51 205.7 102 100.0
Cpa.g.sc16.180 Carica papaya HOM05D001267 ORTHO05D001323 7.5e-15 84.0 67 65.7
CSS0029202 Camellia sinensis var. sinensis HOM05D001267 ORTHO05D001323 1.6e-12 76.3 47 76.6
Dinv29751 Davidia involucrata HOM05D001267 ORTHO05D001323 5.0e-11 71.2 47 76.6
Cfa015394 Carpinus fangiana HOM05D001267 ORTHO05D001323 6.6e-11 70.9 47 72.3
Haze_01192 Corylus avellana HOM05D001267 ORTHO05D001323 6.6e-11 70.9 47 72.3
Dinv44374 Davidia involucrata HOM05D001267 ORTHO05D001323 8.6e-11 70.5 47 76.6
GSVIVG01017727001 Vitis vinifera HOM05D001267 ORTHO05D001323 1.1e-10 70.1 47 74.5
Aqoxy5G00742 Aquilegia oxysepala HOM05D001267 ORTHO05D001323 2.5e-10 68.9 48 72.9
Manes.03G196100 Manihot esculenta HOM05D001267 ORTHO05D001323 2.5e-10 68.9 47 70.2
CiPaw.01G147800 Carya illinoinensis HOM05D001267 ORTHO05D001323 3.3e-10 68.6 47 70.2
Hma1.2p1_1185F.1_g265050 Hydrangea macrophylla HOM05D001267 ORTHO05D001323 3.3e-10 68.6 47 74.5
CiPaw.02G082500 Carya illinoinensis HOM05D001267 ORTHO05D001323 4.3e-10 68.2 47 68.1
Actinidia40278 Actinidia chinensis HOM05D001267 ORTHO05D001323 5.6e-10 67.8 48 75.0
ClCG06G005100 Citrullus lanatus HOM05D001267 ORTHO05D001323 5.6e-10 67.8 47 68.1
CsaV3_6G022300 Cucumis sativus L. HOM05D001267 ORTHO05D001323 7.3e-10 67.4 47 68.1
Nn3g21462 Nelumbo nucifera HOM05D001267 ORTHO05D001323 7.3e-10 67.4 48 70.8
Sed0000893 Sechium edule HOM05D001267 ORTHO05D001323 7.3e-10 67.4 44 72.7
CSS0024026 Camellia sinensis var. sinensis HOM05D001267 ORTHO05D001323 9.5e-10 67.0 48 75.0
MELO3C021327.2 Cucumis melo HOM05D001267 ORTHO05D001323 9.5e-10 67.0 47 68.1
COL.COLO4_13855 Corchorus olitorius HOM05D001267 ORTHO05D001323 1.2e-09 66.6 47 72.3
Manes.15G011900 Manihot esculenta HOM05D001267 ORTHO05D001323 1.6e-09 66.2 47 68.1
TAR365G0224 Trochodendron aralioides HOM05D001267 ORTHO05D001323 3.6e-09 65.1 48 68.8
Nitab4.5_0000570g0160 Nicotiana tabacum HOM05D001267 ORTHO05D001323 4.7e-09 64.7 64 57.8
Nitab4.5_0003466g0090 Nicotiana tabacum HOM05D001267 ORTHO05D001323 4.7e-09 64.7 64 57.8
vmacro08161 Vaccinium macrocarpon HOM05D001267 ORTHO05D001323 4.7e-09 64.7 49 71.4
TAR636G2987 Trochodendron aralioides HOM05D001267 ORTHO05D001323 6.2e-09 64.3 48 68.8
TWI09G0830 Tripterygium wilfordii HOM05D001267 ORTHO05D001323 1.1e-08 63.5 47 66.0
TWI73G0303 Tripterygium wilfordii HOM05D001267 ORTHO05D001323 1.1e-08 63.5 47 66.0
AUR62040731 Chenopodium quinoa HOM05D001267 ORTHO05D001323 1.4e-08 63.2 50 70.0
Actinidia01477 Actinidia chinensis HOM05D001267 ORTHO05D001323 1.8e-08 62.8 48 70.8
AUR62040369 Chenopodium quinoa HOM05D001267 ORTHO05D001323 1.8e-08 62.8 50 70.0
Duzib052G1079 Durio zibethinus HOM05D001267 ORTHO05D001323 1.8e-08 62.8 47 68.1
arahy.Tifrunner.gnm1.ann1.D324NA Arachis hypogaea HOM05D001267 ORTHO05D001323 3.1e-08 62.0 48 70.8
arahy.Tifrunner.gnm1.ann1.LS1NBN Arachis hypogaea HOM05D001267 ORTHO05D001323 3.1e-08 62.0 48 70.8
Thecc.04G285600 Theobroma cacao HOM05D001267 ORTHO05D001323 3.1e-08 62.0 48 70.8
TAR362G0897 Trochodendron aralioides HOM05D001267 ORTHO05D001323 3.1e-08 62.0 47 68.1
EL10Ac3g06608 Beta vulgaris HOM05D001267 ORTHO05D001323 6.8e-08 60.8 49 65.3
DCAR_027071 Daucus carota HOM05D001267 ORTHO05D001323 6.8e-08 60.8 49 69.4
Ah.04g153580 Amaranthus hybridus HOM05D001267 ORTHO05D001323 8.9e-08 60.5 49 65.3
VMungo1215G0202 Vigna mungo HOM05D001267 ORTHO05D001323 8.9e-08 60.5 48 68.8
BolC1t04742H Brassica oleracea HOM05D001267 ORTHO05D001323 1.5e-07 59.7 71 52.1
Sed0018582 Sechium edule HOM05D001267 ORTHO05D001323 1.5e-07 59.7 48 64.6
C01p47710 Brassica napus HOM05D001267 ORTHO05D001323 2.0e-07 59.3 63 55.6
Prupe.1G135100 Prunus persica HOM05D001267 ORTHO05D001323 2.6e-07 58.9 50 62.0
Ah.13g074610 Amaranthus hybridus HOM05D001267 ORTHO05D001323 3.4e-07 58.5 45 66.7
FAN07G1318 Fragaria x ananassa HOM05D001267 ORTHO05D001323 3.4e-07 58.5 47 63.8
FAN17G0109 Fragaria x ananassa HOM05D001267 ORTHO05D001323 3.4e-07 58.5 47 63.8
Rhsim04G0223400 Rhododendron simsii HOM05D001267 ORTHO05D001323 3.4e-07 58.5 47 68.1
Rhsim09G0007000 Rhododendron simsii HOM05D001267 ORTHO05D001323 3.4e-07 58.5 47 68.1
RcHm_v2.0_Chr4g0422421 Rosa chinensis HOM05D001267 ORTHO05D001323 3.4e-07 58.5 47 63.8
Glyma.17G027200 Glycine max HOM05D001267 ORTHO05D001323 4.4e-07 58.2 48 66.7
Gorai.008G134200 Gossypium raimondii HOM05D001267 ORTHO05D019546 4.4e-07 58.2 49 69.4
MD13G1167700 Malus domestica HOM05D001267 ORTHO05D001323 4.4e-07 58.2 50 62.0
Phvul.003G097001 Phaseolus vulgaris HOM05D001267 ORTHO05D001323 4.4e-07 58.2 48 66.7
Gohir.A10G164500 Gossypium hirsutum HOM05D001267 ORTHO05D001323 5.8e-07 57.8 44 72.7
Gohir.D10G170700 Gossypium hirsutum HOM05D001267 ORTHO05D001323 5.8e-07 57.8 44 72.7
Nitab4.5_0001233g0090 Nicotiana tabacum HOM05D001267 ORTHO05D001323 5.8e-07 57.8 57 56.1
Nitab4.5_0001904g0020 Nicotiana tabacum HOM05D001267 ORTHO05D001323 5.8e-07 57.8 57 56.1
CANSAT78G0985 Cannabis sativa HOM05D001267 ORTHO05D001323 7.5e-07 57.4 54 61.1
PSO210G2637 Papaver somniferum HOM05D001267 ORTHO05D001323 7.5e-07 57.4 53 60.4
PSO832G3472 Papaver somniferum HOM05D001267 ORTHO05D001323 7.5e-07 57.4 53 60.4
Glyma.07G246800 Glycine max HOM05D001267 ORTHO05D001323 9.8e-07 57.0 48 66.7
Duzib151G0614 Durio zibethinus HOM05D001267 ORTHO05D001323 1.3e-06 56.6 51 66.7
FAN10G3716 Fragaria x ananassa HOM05D001267 ORTHO05D001323 1.3e-06 56.6 47 61.7
MD16G1167300 Malus domestica HOM05D001267 ORTHO05D001323 1.7e-06 56.2 50 60.0
Gohir.A06G101402 Gossypium hirsutum HOM05D001267 ORTHO05D001323 2.2e-06 55.8 54 66.7
Gohir.D07G037266 Gossypium hirsutum HOM05D001267 ORTHO05D001323 2.2e-06 55.8 54 66.7
Hund24892 Selenicereus undatus HOM05D001267 ORTHO05D001323 2.2e-06 55.8 47 63.8
Lj6A677G77 Lonicera japonica HOM05D001267 ORTHO05D001323 2.9e-06 55.5 51 64.7
SHI00267 Sapria himalayana HOM05D001267 ORTHO05D001323 2.9e-06 55.5 50 52.0
THA.LOC104820296 Tarenaya hassleriana HOM05D001267 ORTHO05D001323 2.9e-06 55.5 47 61.7
THA.LOC104821779 Tarenaya hassleriana HOM05D001267 ORTHO05D001323 2.9e-06 55.5 47 61.7
Aa31LG8G3750 Aethionema arabicum HOM05D001267 ORTHO05D001323 3.7e-06 55.1 47 61.7
DCAR_030524 Daucus carota HOM05D001267 ORTHO05D001323 4.9e-06 54.7 49 63.3
Gohir.D09G239400 Gossypium hirsutum HOM05D001267 ORTHO05D001323 4.9e-06 54.7 45 71.1
Gorai.005G078400 Gossypium raimondii HOM05D001267 ORTHO05D019546 4.9e-06 54.7 45 71.1
Gorai.006G262200 Gossypium raimondii HOM05D001267 ORTHO05D001323 4.9e-06 54.7 45 71.1
Actinidia00016 Actinidia chinensis HOM05D001267 ORTHO05D001323 6.4e-06 54.3 47 66.0
BcaC06g33439 Brassica carinata HOM05D001267 ORTHO05D001323 8.3e-06 53.9 72 47.2
Gohir.A09G238500 Gossypium hirsutum HOM05D001267 ORTHO05D001323 8.3e-06 53.9 45 71.1
Nitab4.5_0000960g0030 Nicotiana tabacum HOM05D001267 ORTHO05D001323 8.3e-06 53.9 58 58.6
TPR.G23002 Trifolium pratense HOM05D001267 ORTHO05D001323 8.3e-06 53.9 63 52.4


User provided reference genes

Program Settings