Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047878 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 6.5e-273 943.3 445 100.0
CSS0001342 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.0e-225 786.6 448 85.5
Actinidia11991 Actinidia chinensis HOM05D004306 ORTHO05D005055 4.3e-224 781.2 444 83.8
Dinv26913 Davidia involucrata HOM05D004306 ORTHO05D005055 1.9e-219 765.8 448 81.7
Rhsim10G0101200 Rhododendron simsii HOM05D004306 ORTHO05D005055 2.5e-216 755.4 446 81.2
Potri.005G145400 Populus trichocarpa HOM05D004306 ORTHO05D005055 2.1e-215 752.3 443 81.5
TWI09G0703 Tripterygium wilfordii HOM05D004306 ORTHO05D005055 2.1e-215 752.3 446 80.7
Atru.chr3.158 Acer truncatum HOM05D004306 ORTHO05D005055 1.8e-214 749.2 446 81.6
Atru.chr3.187 Acer truncatum HOM05D004306 ORTHO05D005055 1.8e-214 749.2 446 81.6
Duzib187G0102 Durio zibethinus HOM05D004306 ORTHO05D005055 4.0e-214 748.0 448 80.4
MD15G1294800 Malus domestica HOM05D004306 ORTHO05D005055 5.3e-214 747.7 443 80.1
CiPaw.02G003700 Carya illinoinensis HOM05D004306 ORTHO05D005055 6.9e-214 747.3 443 80.8
Thecc.01G070200 Theobroma cacao HOM05D004306 ORTHO05D005055 1.2e-213 746.5 448 79.9
Cpa.g.sc6.39 Carica papaya HOM05D004306 ORTHO05D005055 5.8e-213 744.2 442 79.9
ECA238G2426 Erigeron canadensis HOM05D004306 ORTHO05D005055 1.7e-212 742.7 446 78.9
Gohir.A11G216400 Gossypium hirsutum HOM05D004306 ORTHO05D005055 4.9e-212 741.1 448 79.0
Duzib264G0002 Durio zibethinus HOM05D004306 ORTHO05D005055 6.4e-212 740.7 448 79.7
FvH4_1g17390 Fragaria vesca HOM05D004306 ORTHO05D005055 8.4e-212 740.3 443 79.2
Gohir.D11G207000 Gossypium hirsutum HOM05D004306 ORTHO05D005055 8.4e-212 740.3 448 79.0
GSVIVG01000140001 Vitis vinifera HOM05D004306 ORTHO05D005055 1.1e-211 740.0 448 79.9
HanXRQChr14g0449471 Helianthus annuus HOM05D004306 ORTHO05D005055 5.5e-211 737.6 446 79.4
CAN.G1075.22 Capsicum annuum HOM05D004306 ORTHO05D005055 7.1e-211 737.3 443 78.8
CANSAT01G0675 Cannabis sativa HOM05D004306 ORTHO05D005055 9.3e-211 736.9 442 79.4
TPR.G23896 Trifolium pratense HOM05D004306 ORTHO05D005055 1.2e-210 736.5 443 78.3
Phvul.003G236000 Phaseolus vulgaris HOM05D004306 ORTHO05D005055 1.6e-210 736.1 446 78.5
GSVIVG01000135001 Vitis vinifera HOM05D004306 ORTHO05D005055 1.6e-210 736.1 448 79.5
Migut.L00204 Erythranthe guttata HOM05D004306 ORTHO05D005055 2.1e-210 735.7 449 79.3
Lj4A160T62 Lonicera japonica HOM05D004306 ORTHO05D005055 2.1e-210 735.7 448 78.8
Lalb_Chr16g0389191 Lupinus albus HOM05D004306 ORTHO05D005055 2.1e-210 735.7 446 78.7
TAR628G0028 Trochodendron aralioides HOM05D004306 ORTHO05D005055 2.7e-210 735.3 446 79.6
Medtr4g095660 Medicago truncatula HOM05D004306 ORTHO05D005055 6.0e-210 734.2 442 78.3
Lsat_1_v5_gn_2_82860 Lactuca sativa HOM05D004306 ORTHO05D005055 1.3e-209 733.0 446 78.3
CsaV3_6G043980 Cucumis sativus L. HOM05D004306 ORTHO05D005055 1.8e-209 732.6 443 77.9
Cfa004112 Carpinus fangiana HOM05D004306 ORTHO05D005055 3.0e-209 731.9 443 78.8
vmacro05397 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 3.0e-209 731.9 448 79.5
Aqoxy6G02701 Aquilegia oxysepala HOM05D004306 ORTHO05D005055 1.9e-208 729.2 443 77.4
PGR102G2907 Punica granatum HOM05D004306 ORTHO05D005055 4.3e-208 728.0 448 77.9
GSVIVG01000137001 Vitis vinifera HOM05D004306 ORTHO05D005055 9.6e-208 726.9 448 78.8
Peaxi162Scf00264g00117 Petunia axillaris HOM05D004306 ORTHO05D005055 2.8e-207 725.3 445 77.1
Ca_13922_v3 Cicer arietinum L. HOM05D004306 ORTHO05D005055 3.7e-207 724.9 446 76.0
Oeu014230.2 Olea europaea HOM05D004306 ORTHO05D005055 3.7e-207 724.9 446 76.7
Nn1g04599 Nelumbo nucifera HOM05D004306 ORTHO05D005055 4.8e-207 724.5 443 78.6
VMungo0251G0785 Vigna mungo HOM05D004306 ORTHO05D005055 6.2e-207 724.2 446 77.1
Manes.12G110500 Manihot esculenta HOM05D004306 ORTHO05D005055 5.3e-206 721.1 443 78.1
Eucgr.H02295 Eucalyptus grandis HOM05D004306 ORTHO05D005055 1.2e-205 719.9 448 77.9
PGSC0003DMG400024965 Solanum tuberosum HOM05D004306 ORTHO05D005055 1.5e-205 719.5 443 76.7
Haze_15301 Corylus avellana HOM05D004306 ORTHO05D005055 2.6e-205 718.8 518 69.3
AUR62003989 Chenopodium quinoa HOM05D004306 ORTHO05D005055 3.4e-205 718.4 446 76.2
AUR62040257 Chenopodium quinoa HOM05D004306 ORTHO05D005055 4.5e-205 718.0 445 76.9
Nitab4.5_0000651g0100 Nicotiana tabacum HOM05D004306 ORTHO05D005055 4.5e-205 718.0 443 76.5
FAN23G0931 Fragaria x ananassa HOM05D004306 ORTHO05D005055 5.8e-205 717.6 443 77.0
Prupe.6G223000 Prunus persica HOM05D004306 ORTHO05D005055 7.6e-205 717.2 443 77.4
Hund13938 Selenicereus undatus HOM05D004306 ORTHO05D005055 1.3e-204 716.5 469 73.8
FAN28G1176 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.7e-204 716.1 448 76.1
Oeu040626.2 Olea europaea HOM05D004306 ORTHO05D005055 2.2e-204 715.7 446 76.5
FAN26G3311 Fragaria x ananassa HOM05D004306 ORTHO05D005055 2.9e-204 715.3 443 76.7
PSO541G4466 Papaver somniferum HOM05D004306 ORTHO05D005055 2.9e-204 715.3 443 76.1
Solyc02g092530.4 Solanum lycopersicum HOM05D004306 ORTHO05D005055 2.9e-204 715.3 443 76.5
Ciclev10025794m.g Citrus clementina HOM05D004306 ORTHO05D005055 3.8e-204 714.9 448 77.5
FAN19G2263 Fragaria x ananassa HOM05D004306 ORTHO05D005055 3.8e-204 714.9 454 75.6
Gorai.007G222100 Gossypium raimondii HOM05D004306 ORTHO05D005055 3.8e-204 714.9 448 76.3
ClCG01G017440 Citrullus lanatus HOM05D004306 ORTHO05D005055 4.9e-204 714.5 446 76.7
Sopen02g037110 Solanum pennellii HOM05D004306 ORTHO05D005055 3.2e-203 711.8 442 76.2
MSTRG.15357 Avicennia marina HOM05D004306 ORTHO05D005055 5.5e-203 711.1 446 76.2
MBI16_g09132_MAGBIO Magnolia biondii HOM05D004306 ORTHO05D005055 7.1e-203 710.7 446 76.9
Sed0025668 Sechium edule HOM05D004306 ORTHO05D005055 2.1e-202 709.1 446 76.2
Nitab4.5_0006069g0040 Nicotiana tabacum HOM05D004306 ORTHO05D005055 4.6e-202 708.0 501 69.3
Glyma.17G161900 Glycine max HOM05D004306 ORTHO05D005055 6.0e-202 707.6 445 76.6
arahy.Tifrunner.gnm1.ann1.GV60EB Arachis hypogaea HOM05D004306 ORTHO05D005055 1.5e-200 703.0 442 75.8
CDE04G2054 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 3.3e-200 701.8 447 76.3
Cc07_g06920 Coffea canephora HOM05D004306 ORTHO05D005055 4.3e-200 701.4 447 75.6
Lj4g0006645 Lotus japonicus HOM05D004306 ORTHO05D005055 4.3e-200 701.4 446 75.6
SalBow5G1134 Salvia bowleyana HOM05D004306 ORTHO05D005055 4.3e-200 701.4 446 75.3
SalBow5G1710 Salvia bowleyana HOM05D004306 ORTHO05D005055 7.4e-200 700.7 446 75.3
EL10Ac6g15639 Beta vulgaris HOM05D004306 ORTHO05D005055 1.3e-199 699.9 445 74.6
Lj4g0023143 Lotus japonicus HOM05D004306 ORTHO05D005055 1.6e-199 699.5 446 75.1
SGA_v2.0_scaffold21G09395 Striga asiatica HOM05D004306 ORTHO05D005055 1.4e-198 696.4 448 74.3
DCAR_025786 Daucus carota HOM05D004306 ORTHO05D005055 1.8e-198 696.0 444 74.1
Sabra05G0116200 Salix brachista HOM05D004306 ORTHO05D005055 1.8e-198 696.0 496 69.8
Thhalv10025178m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 2.4e-198 695.7 443 74.5
AL7G13210 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 3.1e-198 695.3 446 74.4
BolC1t00152H Brassica oleracea HOM05D004306 ORTHO05D005055 4.1e-198 694.9 446 73.5
Thhalv10025180m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 4.1e-198 694.9 443 74.9
RcHm_v2.0_Chr2g0107581 Rosa chinensis HOM05D004306 ORTHO05D005055 4.1e-198 694.9 443 76.1
C01p01570 Brassica napus HOM05D004306 ORTHO05D005055 5.3e-198 694.5 446 73.8
A01p01390 Brassica napus HOM05D004306 ORTHO05D005055 1.2e-197 693.3 446 73.8
BraA01t00135Z Brassica rapa HOM05D004306 ORTHO05D005055 1.2e-197 693.3 446 73.8
CARHR245950 Cardamine hirsuta HOM05D004306 ORTHO05D005055 2.6e-197 692.2 446 74.2
Carub.0007s0271 Capsella rubella HOM05D004306 ORTHO05D005055 3.4e-197 691.8 446 73.3
Aa31LG6G14430 Aethionema arabicum HOM05D004306 ORTHO05D005055 1.0e-196 690.3 441 75.3
Os01g0764900 Oryza sativa ssp. japonica HOM05D004306 ORTHO05D005055 2.2e-196 689.1 446 73.1
AL7G13200 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 3.8e-196 688.3 446 73.1
THA.LOC104819873 Tarenaya hassleriana HOM05D004306 ORTHO05D005055 5.0e-196 688.0 484 70.2
CSS0039286 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 2.5e-195 685.6 450 77.6
Sp7g35230 Schrenkiella parvula HOM05D004306 ORTHO05D005055 4.2e-195 684.9 443 73.4
AT4G37550 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 5.5e-195 684.5 446 73.3
Zm00001eb370290 Zea mays HOM05D004306 ORTHO05D005055 2.1e-194 682.6 446 71.7
CARHR245960 Cardamine hirsuta HOM05D004306 ORTHO05D005055 2.7e-194 682.2 446 72.6
Sp7g35240 Schrenkiella parvula HOM05D004306 ORTHO05D005055 2.7e-194 682.2 446 72.6
AT4G37560 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 1.8e-193 679.5 442 73.1
BraA01t00136Z Brassica rapa HOM05D004306 ORTHO05D005055 1.1e-192 676.8 447 72.7
A01p01400 Brassica napus HOM05D004306 ORTHO05D005055 4.3e-192 674.9 447 72.3
BolC1t00153H Brassica oleracea HOM05D004306 ORTHO05D005055 4.3e-192 674.9 447 72.3
BcaNung05904 Brassica carinata HOM05D004306 ORTHO05D005055 5.7e-192 674.5 447 72.3
C01p01580 Brassica napus HOM05D004306 ORTHO05D005055 5.7e-192 674.5 447 72.3
Hma1.2p1_0730F.1_g209845 Hydrangea macrophylla HOM05D004306 ORTHO05D005055 9.1e-190 667.2 442 74.2
BcaNung05906 Brassica carinata HOM05D004306 ORTHO05D005055 9.4e-187 657.1 446 71.3
unitig_748.g8394 Utricularia gibba HOM05D004306 ORTHO05D005055 2.7e-186 655.6 446 70.4
MELO3C007621.2 Cucumis melo HOM05D004306 ORTHO05D005055 4.8e-183 644.8 407 75.9
CSS0041574 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 7.7e-181 637.5 450 72.4
BcaNung05905 Brassica carinata HOM05D004306 ORTHO05D005055 1.0e-180 637.1 446 69.7
Ah.02g125510 Amaranthus hybridus HOM05D004306 ORTHO05D005055 2.5e-179 632.5 445 68.3
Cfa004110 Carpinus fangiana HOM05D004306 ORTHO05D005055 9.4e-179 630.6 454 69.6
Psat0ss839g0200 Pisum sativum HOM05D004306 ORTHO05D005055 2.8e-175 619.0 376 78.7
Cre16.g691750 Chlamydomonas reinhardtii HOM05D004306 ORTHO05D005055 4.8e-175 618.2 443 67.3
SMO141G0231 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 2.2e-172 609.4 441 67.1
Pp3c3_32950 Physcomitrium patens HOM05D004306 ORTHO05D005055 4.0e-169 598.6 441 65.3
ATR0019G017 Amborella trichopoda HOM05D004306 ORTHO05D005055 4.1e-166 588.6 372 75.0
HPP92_014148 Vanilla planifolia HOM05D004306 ORTHO05D005055 4.7e-162 575.1 383 72.8
Sc16g0000120 Simmondsia chinensis HOM05D004306 ORTHO05D005055 2.1e-146 523.1 335 76.4
COL.COLO4_11552 Corchorus olitorius HOM05D004306 ORTHO05D005055 7.3e-139 498.0 456 59.2
Oeu013288.2 Olea europaea HOM05D004306 ORTHO05D005055 7.8e-133 478.0 444 57.4
arahy.Tifrunner.gnm1.ann1.HR4B5C Arachis hypogaea HOM05D004306 ORTHO05D005055 6.6e-132 474.9 273 81.0
HPP92_014166 Vanilla planifolia HOM05D004306 ORTHO05D005055 1.5e-131 473.8 407 61.7
Zm00001eb152190 Zea mays HOM05D004306 ORTHO05D005055 3.7e-127 459.1 311 69.1
Sc16g0000140 Simmondsia chinensis HOM05D004306 ORTHO05D005055 6.4e-127 458.4 278 78.1
DCAR_025787 Daucus carota HOM05D004306 ORTHO05D005055 1.1e-115 421.0 276 72.1
SMO170G0023 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 4.2e-110 402.5 371 55.8
SEGI_32720 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.1e-94 351.3 292 58.6
ATR0019G021 Amborella trichopoda HOM05D004306 ORTHO05D005055 3.8e-87 326.2 275 60.0
MD00G1015700 Malus domestica HOM05D004306 ORTHO05D005055 5.0e-79 299.3 198 71.7
DCAR_000330 Daucus carota HOM05D004306 ORTHO05D005055 1.8e-76 290.8 161 82.6
EL10Ac1g01850 Beta vulgaris HOM05D004306 ORTHO05D005055 3.3e-67 260.0 143 80.4
SEGI_23023 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.5e-64 251.1 145 75.9
Sc16g0000130 Simmondsia chinensis HOM05D004306 ORTHO05D005055 4.5e-64 249.6 152 70.4
MD00G1015600 Malus domestica HOM05D004306 ORTHO05D005055 5.9e-64 249.2 193 64.8
arahy.Tifrunner.gnm1.ann1.ZW9ABU Arachis hypogaea HOM05D004306 ORTHO05D005055 3.8e-63 246.5 148 75.0
SEGI_13173 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 5.5e-62 242.7 180 62.2
SEGI_27901 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 3.6e-61 240.0 146 75.3
Cfa025028 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.0e-55 221.9 268 45.9
TPR.G23871 Trifolium pratense HOM05D004306 ORTHO05D005055 2.4e-49 200.7 108 86.1
EL10Ac5g12500 Beta vulgaris HOM05D004306 ORTHO05D005055 5.0e-47 193.0 107 80.4
CDE07G1667 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 4.1e-41 173.3 111 71.2
COL.COLO4_11551 Corchorus olitorius HOM05D004306 ORTHO05D005055 5.9e-40 169.5 135 63.0
EL10Ac4g09102 Beta vulgaris HOM05D004306 ORTHO05D005055 9.5e-38 162.2 131 58.8
RcHm_v2.0_Chr2g0107621 Rosa chinensis HOM05D004306 ORTHO05D005055 4.6e-32 143.3 140 55.7
vmacro05396 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 1.4e-28 131.7 67 88.1
FAN28G1106 Fragaria x ananassa HOM05D004306 ORTHO05D005055 4.4e-27 126.7 67 85.1
Cfa004111 Carpinus fangiana HOM05D004306 ORTHO05D005055 3.7e-26 123.6 71 80.3
SGA_v2.0_scaffold21G09394 Striga asiatica HOM05D004306 ORTHO05D005055 1.2e-24 118.6 66 78.8
Lj4C160G10 Lonicera japonica HOM05D004306 ORTHO05D005055 1.1e-22 112.1 66 78.8
ATR0515G001 Amborella trichopoda HOM05D004306 ORTHO05D005055 1.5e-22 111.7 55 89.1
AUR62003988 Chenopodium quinoa HOM05D004306 ORTHO05D005055 1.5e-22 111.7 65 78.5
Psat5g012000 Pisum sativum HOM05D004306 ORTHO05D005055 1.8e-20 104.8 72 65.3
Dinv30076 Davidia involucrata HOM05D004306 ORTHO05D005055 3.1e-20 104.0 73 64.4
Nitab4.5_0000032g0200 Nicotiana tabacum HOM05D004306 ORTHO05D005055 6.6e-15 86.3 53 69.8
Cc07_g06910 Coffea canephora HOM05D004306 ORTHO05D005055 5.6e-14 83.2 55 70.9
Eucgr.H02294 Eucalyptus grandis HOM05D004306 ORTHO05D005055 1.6e-13 81.6 64 59.4
EL10Ac4g09101 Beta vulgaris HOM05D004306 ORTHO05D005055 2.3e-12 77.8 39 82.1
PRCOL_00001243 Prasinoderma coloniale HOM05D004306 ORTHO05D005055 4.0e-12 77.0 418 24.4
Thecc.01G069900 Theobroma cacao HOM05D004306 ORTHO05D005055 1.2e-08 65.5 36 80.6
Sabra07G0047000 Salix brachista HOM05D004306 ORTHO05D005055 7.8e-08 62.8 86 47.7


User provided reference genes

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