Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047870 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 1.2e-203 713.0 361 100.0
CSS0007570 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 6.2e-197 690.6 356 98.6
Dinv30424 Davidia involucrata HOM05D001329 ORTHO05D004946 6.4e-117 424.9 348 66.4
Rhsim08G0228700 Rhododendron simsii HOM05D001329 ORTHO05D004946 9.5e-113 411.0 380 62.6
vmacro18841 Vaccinium macrocarpon HOM05D001329 ORTHO05D004946 3.9e-106 389.0 407 55.0
Actinidia21724 Actinidia chinensis HOM05D001329 ORTHO05D004946 1.5e-102 377.1 339 63.4
DCAR_007591 Daucus carota HOM05D001329 ORTHO05D004946 5.4e-100 368.6 367 55.9
GSVIVG01016954001 Vitis vinifera HOM05D001329 ORTHO05D004946 3.3e-97 359.4 364 57.7
Eucgr.J02692 Eucalyptus grandis HOM05D001329 ORTHO05D004946 8.1e-96 354.8 364 57.7
ClCG07G013420 Citrullus lanatus HOM05D001329 ORTHO05D004946 1.2e-94 350.9 378 55.8
ClCG07G013460 Citrullus lanatus HOM05D001329 ORTHO05D004946 1.2e-94 350.9 378 55.8
ECA232G1252 Erigeron canadensis HOM05D001329 ORTHO05D004946 2.6e-94 349.7 295 63.1
Eucgr.J02926 Eucalyptus grandis HOM05D001329 ORTHO05D004946 7.6e-94 348.2 366 56.0
Lsat_1_v5_gn_4_98041 Lactuca sativa HOM05D001329 ORTHO05D004946 2.9e-93 346.3 362 54.1
HanXRQChr05g0139791 Helianthus annuus HOM05D001329 ORTHO05D004946 7.1e-92 341.7 285 63.2
PGR102G1644 Punica granatum HOM05D001329 ORTHO05D004946 1.6e-91 340.5 395 51.6
TAR626G1659 Trochodendron aralioides HOM05D001329 ORTHO05D004946 8.6e-90 334.7 418 50.2
Nn8g39015 Nelumbo nucifera HOM05D001329 ORTHO05D004946 2.5e-89 333.2 433 49.0
Potri.001G191200 Populus trichocarpa HOM05D001329 ORTHO05D004946 2.5e-89 333.2 396 51.3
TAR626G1508 Trochodendron aralioides HOM05D001329 ORTHO05D004946 4.3e-89 332.4 427 49.6
Sed0006591 Sechium edule HOM05D001329 ORTHO05D004946 7.3e-89 331.6 376 54.0
QL05p019057 Quercus lobata HOM05D001329 ORTHO05D004946 1.2e-88 330.9 358 55.3
Haze_15870 Corylus avellana HOM05D001329 ORTHO05D004946 2.8e-88 329.7 361 54.8
Haze_15874 Corylus avellana HOM05D001329 ORTHO05D004946 3.6e-88 329.3 361 54.8
Nitab4.5_0004969g0080 Nicotiana tabacum HOM05D001329 ORTHO05D004946 8.1e-88 328.2 369 53.1
TWI18G0587 Tripterygium wilfordii HOM05D001329 ORTHO05D004946 3.1e-87 326.2 441 46.3
Cc04_g02430 Coffea canephora HOM05D001329 ORTHO05D004946 9.9e-86 321.2 366 52.2
Sabra01G0150400 Salix brachista HOM05D001329 ORTHO05D004946 3.8e-85 319.3 406 49.0
Aqoxy7G03959 Aquilegia oxysepala HOM05D001329 ORTHO05D004946 6.4e-85 318.5 414 48.8
THA.LOC104803142 Tarenaya hassleriana HOM05D001329 ORTHO05D004946 6.4e-85 318.5 370 51.4
Migut.I00963 Erythranthe guttata HOM05D001329 ORTHO05D004946 2.4e-84 316.6 367 52.3
Sc12g0010100 Simmondsia chinensis HOM05D001329 ORTHO05D004946 2.4e-84 316.6 362 52.8
Peaxi162Scf00038g01146 Petunia axillaris HOM05D001329 ORTHO05D004946 9.3e-84 314.7 356 55.6
Prupe.3G056500 Prunus persica HOM05D001329 ORTHO05D004946 2.7e-83 313.2 392 50.3
Nitab4.5_0005085g0040 Nicotiana tabacum HOM05D001329 ORTHO05D004946 3.5e-83 312.8 242 67.8
CANSAT56G2668 Cannabis sativa HOM05D001329 ORTHO05D004946 6.0e-83 312.0 378 50.3
Thecc.06G102200 Theobroma cacao HOM05D001329 ORTHO05D004946 1.3e-82 310.8 394 47.0
Duzib235G0146 Durio zibethinus HOM05D001329 ORTHO05D004946 1.7e-82 310.5 400 47.0
PGSC0003DMG400002521 Solanum tuberosum HOM05D001329 ORTHO05D004946 3.0e-82 309.7 212 71.7
Manes.11G031600 Manihot esculenta HOM05D001329 ORTHO05D004946 5.1e-82 308.9 432 45.4
CAN.G1143.24 Capsicum annuum HOM05D001329 ORTHO05D004946 6.6e-82 308.5 362 51.7
Sopen03g039950 Solanum pennellii HOM05D001329 ORTHO05D004946 1.9e-81 307.0 211 71.1
PSO782G0993 Papaver somniferum HOM05D001329 ORTHO05D004946 3.3e-81 306.2 374 49.7
Solyc03g121120.4 Solanum lycopersicum HOM05D001329 ORTHO05D004946 1.6e-80 303.9 365 51.5
Gorai.011G070300 Gossypium raimondii HOM05D001329 ORTHO05D004946 2.1e-80 303.5 375 48.0
AUR62022239 Chenopodium quinoa HOM05D001329 ORTHO05D004946 4.8e-80 302.4 378 47.9
MELO3C013011.2 Cucumis melo HOM05D001329 ORTHO05D004946 4.8e-80 302.4 370 51.1
Psat4g196800 Pisum sativum HOM05D001329 ORTHO05D004946 4.8e-80 302.4 232 65.5
MD17G1180500 Malus domestica HOM05D001329 ORTHO05D004946 1.8e-79 300.4 430 47.4
SGA_v2.0_scaffold45G16999 Striga asiatica HOM05D001329 ORTHO05D004946 1.5e-78 297.4 371 49.1
Ciclev10025165m.g Citrus clementina HOM05D001329 ORTHO05D004946 2.6e-78 296.6 334 53.0
CDE02G2442 Ceratophyllum demersum HOM05D001329 ORTHO05D004946 3.4e-78 296.2 291 55.7
SalBow2G1072 Salvia bowleyana HOM05D001329 ORTHO05D004946 9.9e-78 294.7 373 48.8
AUR62031953 Chenopodium quinoa HOM05D001329 ORTHO05D004946 2.9e-77 293.1 370 47.8
FvH4_6g32620 Fragaria vesca HOM05D001329 ORTHO05D004946 4.9e-77 292.4 363 49.6
PSO478G0947 Papaver somniferum HOM05D001329 ORTHO05D004946 6.4e-77 292.0 234 63.2
Ah.01g017270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 2.4e-76 290.0 374 48.7
MBI02_g35318_MAGBIO Magnolia biondii HOM05D001329 ORTHO05D004946 2.4e-76 290.0 353 51.3
Carub.0008s1040 Capsella rubella HOM05D001329 ORTHO05D004946 4.2e-76 289.3 371 47.4
CsaV3_3G023430 Cucumis sativus L. HOM05D001329 ORTHO05D004946 4.2e-76 289.3 368 50.0
Medtr8g014670 Medicago truncatula HOM05D001329 ORTHO05D004946 9.3e-76 288.1 293 55.3
Hund07630 Selenicereus undatus HOM05D001329 ORTHO05D004946 9.3e-76 288.1 375 50.1
AL8G24420 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 2.7e-75 286.6 297 54.9
Aa31LG3G5830 Aethionema arabicum HOM05D001329 ORTHO05D004946 4.6e-75 285.8 293 53.9
AT5G50340 Arabidopsis thaliana HOM05D001329 ORTHO05D004946 1.8e-74 283.9 370 47.8
COL.COLO4_30535 Corchorus olitorius HOM05D001329 ORTHO05D004946 1.8e-74 283.9 390 45.1
RcHm_v2.0_Chr2g0141101 Rosa chinensis HOM05D001329 ORTHO05D004946 1.8e-74 283.9 368 50.5
Sp6g12440 Schrenkiella parvula HOM05D001329 ORTHO05D004946 3.9e-74 282.7 325 49.5
TPR.G15143 Trifolium pratense HOM05D001329 ORTHO05D004946 6.7e-74 282.0 222 65.3
Phvul.010G143800 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 8.7e-74 281.6 277 56.3
ATR0705G162 Amborella trichopoda HOM05D001329 ORTHO05D004946 1.5e-73 280.8 218 61.0
arahy.Tifrunner.gnm1.ann1.KL0FMA Arachis hypogaea HOM05D001329 ORTHO05D002618 1.9e-73 280.4 217 65.0
EL10Ac9g21183 Beta vulgaris HOM05D001329 ORTHO05D004946 2.5e-73 280.0 369 48.2
CARHR258160 Cardamine hirsuta HOM05D001329 ORTHO05D004946 2.5e-73 280.0 319 53.3
Lalb_Chr04g0263001 Lupinus albus HOM05D001329 ORTHO05D004946 2.5e-73 280.0 250 60.4
arahy.Tifrunner.gnm1.ann1.B6KHKZ Arachis hypogaea HOM05D001329 ORTHO05D002618 4.3e-73 279.3 217 65.0
FAN05G0851 Fragaria x ananassa HOM05D001329 ORTHO05D004946 7.4e-73 278.5 363 49.0
VMungo0331G1514 Vigna mungo HOM05D001329 ORTHO05D004946 9.6e-73 278.1 289 54.0
A03p27790 Brassica napus HOM05D001329 ORTHO05D004946 1.3e-72 277.7 309 51.1
BraA03t11990Z Brassica rapa HOM05D001329 ORTHO05D004946 1.3e-72 277.7 309 50.8
unitig_88.g27600 Utricularia gibba HOM05D001329 ORTHO05D004946 1.6e-72 277.3 287 53.7
CiPaw.01G230000 Carya illinoinensis HOM05D001329 ORTHO05D004946 3.6e-72 276.2 232 63.4
BcaB01g02899 Brassica carinata HOM05D001329 ORTHO05D004946 8.1e-72 275.0 218 61.9
BcaC01g04813 Brassica carinata HOM05D001329 ORTHO05D004946 8.1e-72 275.0 290 51.4
Glyma.08G199700 Glycine max HOM05D001329 ORTHO05D004946 1.1e-71 274.6 291 55.0
SGA_v2.0_scaffold265G46056 Striga asiatica HOM05D001329 ORTHO05D004946 1.1e-71 274.6 384 46.1
GSVIVG01016953001 Vitis vinifera HOM05D001329 ORTHO05D004946 5.3e-71 272.3 184 77.7
BolC3t15673H Brassica oleracea HOM05D001329 ORTHO05D004946 6.9e-71 271.9 311 50.5
C03p33520 Brassica napus HOM05D001329 ORTHO05D004946 9.0e-71 271.6 311 50.5
Thhalv10013055m.g Eutrema salsugineum HOM05D001329 ORTHO05D004946 9.0e-71 271.6 321 48.6
FAN14G3013 Fragaria x ananassa HOM05D001329 ORTHO05D004946 7.6e-70 268.5 257 57.2
Gohir.A10G064700 Gossypium hirsutum HOM05D001329 ORTHO05D004946 3.8e-69 266.2 375 44.0
Lalb_Chr24g0396201 Lupinus albus HOM05D001329 ORTHO05D004946 1.0e-66 258.1 218 61.0
Lj3g0004043 Lotus japonicus HOM05D001329 ORTHO05D004946 1.1e-65 254.6 240 56.2
Ca_23279_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 2.5e-65 253.4 268 54.1
Zm00001eb270700 Zea mays HOM05D001329 ORTHO05D004946 6.2e-64 248.8 314 45.5
Phvul.005G165000 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 8.1e-64 248.4 240 54.6
arahy.Tifrunner.gnm1.ann1.V5Z0HR Arachis hypogaea HOM05D001329 ORTHO05D004946 3.1e-63 246.5 226 55.8
Glyma.15G021000 Glycine max HOM05D001329 ORTHO05D004946 1.2e-62 244.6 310 49.0
VMungo1080G0220 Vigna mungo HOM05D001329 ORTHO05D004946 1.0e-61 241.5 244 54.1
VMungo1080G1498 Vigna mungo HOM05D001329 ORTHO05D004946 1.7e-61 240.7 245 53.9
Os06g0151600 Oryza sativa ssp. japonica HOM05D001329 ORTHO05D004946 3.8e-61 239.6 280 48.9
Ca_01173_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 8.4e-61 238.4 327 45.0
TPR.G6578 Trifolium pratense HOM05D001329 ORTHO05D004946 1.0e-58 231.5 363 43.3
Medtr2g100640 Medicago truncatula HOM05D001329 ORTHO05D004946 6.7e-58 228.8 365 41.1
Lj9C514G19 Lonicera japonica HOM05D001329 ORTHO05D004946 1.9e-57 227.3 151 78.8
Psat5g295200 Pisum sativum HOM05D001329 ORTHO05D004946 6.3e-56 222.2 300 47.0
Pp3c1_36770 Physcomitrium patens HOM05D001329 ORTHO05D004946 1.1e-55 221.5 275 47.6
Mapoly0008s0091 Marchantia polymorpha HOM05D001329 ORTHO05D004946 1.3e-53 214.5 267 45.7
AagrBONN_evm.TU.Sc2ySwM_340.358 Anthoceros agrestis HOM05D001329 ORTHO05D004946 1.7e-53 214.2 238 48.3
Hma1.2p1_0430F.1_g151230 Hydrangea macrophylla HOM05D001329 ORTHO05D004946 5.0e-53 212.6 250 52.4
AUR62022260 Chenopodium quinoa HOM05D001329 ORTHO05D004946 1.9e-52 210.7 179 63.1
SHI11143 Sapria himalayana HOM05D000023 ORTHO05D000014 4.2e-52 209.5 299 41.8
Cpa.g.sc25.37 Carica papaya HOM05D001329 ORTHO05D004946 2.2e-48 197.2 125 80.8
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 2.4e-47 193.7 129 76.0
SMO146G0024 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 6.5e-45 185.7 243 44.0
Lj3g0020598 Lotus japonicus HOM05D001329 ORTHO05D004946 1.0e-42 178.3 126 75.4
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 3.0e-42 176.8 129 72.9
arahy.Tifrunner.gnm1.ann1.VU8J7C Arachis hypogaea HOM05D001329 ORTHO05D004946 1.7e-40 171.0 205 44.9
SEGI_08653 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 4.2e-36 156.4 168 50.6
RcHm_v2.0_Chr2g0141091 Rosa chinensis HOM05D001329 ORTHO05D004946 7.2e-36 155.6 177 52.5
SEGI_18109 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 1.6e-35 154.5 117 68.4
MCO02G474 Micromonas commoda HOM05D001329 ORTHO05D004946 5.2e-34 149.4 218 41.3
CBR_g52747 Chara braunii HOM05D001329 ORTHO05D004946 1.5e-33 147.9 350 32.3
Cpa.g.sc25.35 Carica papaya HOM05D001329 ORTHO05D004946 1.3e-32 144.8 134 53.7
PRCOL_00001245 Prasinoderma coloniale HOM05D001329 ORTHO05D004946 3.7e-32 143.3 281 36.7
Gohir.D10G066200 Gossypium hirsutum HOM05D001329 ORTHO05D004946 9.1e-31 138.7 127 60.6
Psat5g295400 Pisum sativum HOM05D001329 ORTHO05D004946 2.2e-29 134.0 125 51.2
Glyma.13G353300 Glycine max HOM05D001329 ORTHO05D004946 2.7e-27 127.1 119 57.1
Actinidia32113 Actinidia chinensis HOM05D001329 ORTHO05D004946 7.0e-23 112.5 211 43.6
Gohir.A05G129875 Gossypium hirsutum HOM05D001329 ORTHO05D004946 6.1e-19 99.4 70 68.6
PSO675G5297 Papaver somniferum HOM05D001329 ORTHO05D004946 3.0e-18 97.1 82 64.6
Psat5g239480 Pisum sativum HOM05D001329 ORTHO05D004946 1.5e-17 94.7 90 61.1
Eucgr.G00548 Eucalyptus grandis HOM05D001329 ORTHO05D004946 2.8e-16 90.5 60 75.0
Cfa015409 Carpinus fangiana HOM05D007753 ORTHO05D009385 2.4e-15 87.4 64 64.1
arahy.Tifrunner.gnm1.ann1.3W2ZUL Arachis hypogaea HOM05D001329 ORTHO05D010271 7.0e-15 85.9 74 60.8
C04p54240 Brassica napus HOM05D001329 ORTHO05D004946 2.7e-14 84.0 79 46.8
Actinidia32112 Actinidia chinensis HOM05D001329 ORTHO05D004946 1.0e-13 82.0 53 79.2
BcaB01g06145 Brassica carinata HOM05D001329 ORTHO05D004946 1.3e-13 81.6 52 63.5
BcaC02g08434 Brassica carinata HOM05D001329 ORTHO05D004946 5.0e-13 79.7 52 61.5
Cre07.g317908 Chlamydomonas reinhardtii HOM05D001329 ORTHO05D004946 8.6e-13 79.0 186 33.3
AUR62022240 Chenopodium quinoa HOM05D001329 ORTHO05D004946 2.5e-12 77.4 232 33.2
arahy.Tifrunner.gnm1.ann1.R9IHKK Arachis hypogaea HOM05D001329 ORTHO05D010271 5.7e-09 66.2 52 67.3
arahy.Tifrunner.gnm1.ann1.H8VH8W Arachis hypogaea HOM05D008137 ORTHO05D010271 2.8e-08 63.9 51 62.7
arahy.Tifrunner.gnm1.ann1.6Z8QT9 Arachis hypogaea HOM05D001329 ORTHO05D010271 3.5e-06 57.0 52 55.8
CsaV3_5G013640 Cucumis sativus L. HOM05D001329 ORTHO05D004946 5.9e-06 56.2 92 38.0


User provided reference genes

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