Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047821 Camellia sinensis var. sinensis HOM05D008163 ORTHO05D010305 5.2e-125 451.1 226 100.0
CSS0033547 Camellia sinensis var. sinensis HOM05D008163 ORTHO05D010305 5.6e-63 245.0 125 99.2
Actinidia29350 Actinidia chinensis HOM05D008163 ORTHO05D010305 1.2e-57 227.3 175 69.1
Manes.09G036100 Manihot esculenta HOM05D008163 ORTHO05D010305 4.8e-30 135.6 154 49.4
Prupe.7G030100 Prunus persica HOM05D008163 ORTHO05D010305 1.3e-27 127.5 87 73.6
Prupe.4G282300 Prunus persica HOM05D008163 ORTHO05D010305 2.9e-27 126.3 87 73.6
MD15G1374400 Malus domestica HOM05D008163 ORTHO05D010305 3.2e-26 122.9 135 49.6
MD12G1044600 Malus domestica HOM05D008163 ORTHO05D010305 2.1e-25 120.2 87 69.0
RcHm_v2.0_Chr1g0321141 Rosa chinensis HOM05D008163 ORTHO05D010305 3.3e-23 112.8 90 64.4
Rhsim06G0223600 Rhododendron simsii HOM05D000504 ORTHO05D000403 9.7e-23 111.3 74 68.9
FAN03G0237 Fragaria x ananassa HOM05D008163 ORTHO05D010305 1.7e-22 110.5 96 61.5
SalBow1G5351 Salvia bowleyana HOM05D008163 ORTHO05D010305 1.7e-22 110.5 89 65.2
SalBow1G7817 Salvia bowleyana HOM05D008163 ORTHO05D010305 1.7e-22 110.5 89 65.2
Hma1.2p1_0136F.1_g062003 Hydrangea macrophylla HOM05D008163 ORTHO05D010305 2.2e-22 110.2 89 65.2
FAN06G4466 Fragaria x ananassa HOM05D008163 ORTHO05D010305 2.8e-22 109.8 90 63.3
FvH4_7g02510 Fragaria vesca HOM05D008163 ORTHO05D010305 1.1e-21 107.8 90 62.2
SHI03043 Sapria himalayana HOM05D008163 ORTHO05D010305 1.1e-21 107.8 90 61.1
RcHm_v2.0_Chr2g0149911 Rosa chinensis HOM05D008163 ORTHO05D010305 1.8e-21 107.1 96 60.4
Potri.007G072900 Populus trichocarpa HOM05D008163 ORTHO05D010305 2.4e-21 106.7 87 59.8
Sabra07G0061500 Salix brachista HOM05D008163 ORTHO05D010305 2.4e-21 106.7 87 62.1
Sabra15G0022500 Salix brachista HOM05D008163 ORTHO05D010305 4.1e-21 105.9 87 60.9
Carub.0003s2247 Capsella rubella HOM05D008163 ORTHO05D010305 2.0e-20 103.6 84 60.7
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 2.0e-20 103.6 89 56.2
Prupe.7G029400 Prunus persica HOM05D008163 ORTHO05D010305 2.0e-20 103.6 81 65.4
CARHR098200 Cardamine hirsuta HOM05D008163 ORTHO05D010305 1.0e-19 101.3 79 64.6
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 1.0e-19 101.3 121 45.5
AL3G36570 Arabidopsis lyrata HOM05D008163 ORTHO05D010305 1.3e-19 100.9 79 63.3
AT3G22300 Arabidopsis thaliana HOM05D008163 ORTHO05D010305 1.3e-19 100.9 79 63.3
Aa31LG8G8870 Aethionema arabicum HOM05D008163 ORTHO05D010305 2.2e-19 100.1 84 58.3
Thhalv10021368m.g Eutrema salsugineum HOM05D008163 ORTHO05D010305 2.9e-19 99.8 79 62.0
Solyc11g063600.3 Solanum lycopersicum HOM05D008163 ORTHO05D010305 5.0e-19 99.0 89 61.8
Sp3g20090 Schrenkiella parvula HOM05D008163 ORTHO05D010305 6.5e-19 98.6 84 58.3
Os12g0517200 Oryza sativa ssp. japonica HOM05D008163 ORTHO05D010305 1.1e-18 97.8 87 57.5
BcaC01g03452 Brassica carinata HOM05D008163 ORTHO05D010305 1.5e-18 97.4 79 60.8
A03p42710 Brassica napus HOM05D008163 ORTHO05D010305 1.5e-18 97.4 79 60.8
C03p52430 Brassica napus HOM05D008163 ORTHO05D010305 1.5e-18 97.4 79 60.8
BolC3t17513H Brassica oleracea HOM05D008163 ORTHO05D010305 1.5e-18 97.4 79 60.8
BraA03t13418Z Brassica rapa HOM05D008163 ORTHO05D010305 1.5e-18 97.4 79 60.8
BcaB06g26334 Brassica carinata HOM05D008163 ORTHO05D010305 3.2e-18 96.3 79 60.8
A05p26470 Brassica napus HOM05D008163 ORTHO05D010305 3.2e-18 96.3 125 47.2
BraA05t21520Z Brassica rapa HOM05D008163 ORTHO05D010305 3.2e-18 96.3 125 47.2
BcaC05g28083 Brassica carinata HOM05D008163 ORTHO05D010305 1.2e-17 94.4 79 59.5
C05p41060 Brassica napus HOM05D008163 ORTHO05D010305 1.2e-17 94.4 79 59.5
BolC5t32848H Brassica oleracea HOM05D008163 ORTHO05D010305 1.2e-17 94.4 79 59.5
Hund21444 Selenicereus undatus HOM05D008163 ORTHO05D010305 1.2e-17 94.4 82 59.8
Zm00001eb215210 Zea mays HOM05D008163 ORTHO05D010305 4.7e-17 92.4 84 59.5
Zm00001eb056700 Zea mays HOM05D008163 ORTHO05D010305 4.0e-16 89.4 84 57.1
AUR62012772 Chenopodium quinoa HOM05D008163 ORTHO05D010305 1.5e-15 87.4 83 54.2
AUR62021886 Chenopodium quinoa HOM05D008163 ORTHO05D010305 1.5e-15 87.4 83 54.2
PSO017G7110 Papaver somniferum HOM05D008163 ORTHO05D010305 1.5e-15 87.4 87 50.6
PSO170G4613 Papaver somniferum HOM05D008163 ORTHO05D010305 2.0e-15 87.0 115 42.6
AUR62036216 Chenopodium quinoa HOM05D008163 ORTHO05D010305 2.6e-15 86.7 83 53.0
DCAR_027582 Daucus carota HOM05D008163 ORTHO05D010305 4.4e-15 85.9 79 51.9
SEGI_07019 Sequoiadendron giganteum HOM05D008163 ORTHO05D010305 1.3e-14 84.3 73 58.9
EL10Ac8g20156 Beta vulgaris HOM05D008163 ORTHO05D010305 2.8e-14 83.2 71 57.7
Lalb_Chr00c21g0405831 Lupinus albus HOM05D008163 ORTHO05D010305 4.5e-12 75.9 61 63.9
Nn1g09991 Nelumbo nucifera HOM05D008163 ORTHO05D010305 4.5e-12 75.9 61 63.9
Nn1g10091 Nelumbo nucifera HOM05D008163 ORTHO05D010305 4.5e-12 75.9 61 63.9
Ah.14g087810 Amaranthus hybridus HOM05D000967 ORTHO05D000796 7.7e-12 75.1 82 45.1
TPR.G20554 Trifolium pratense HOM05D008163 ORTHO05D010305 7.7e-12 75.1 61 63.9
Nitab4.5_0000161g0030 Nicotiana tabacum HOM05D008163 ORTHO05D010305 6.5e-11 72.0 65 56.9
Nitab4.5_0000592g0150 Nicotiana tabacum HOM05D008163 ORTHO05D010305 2.5e-10 70.1 58 63.8
Nitab4.5_0001127g0310 Nicotiana tabacum HOM05D008163 ORTHO05D010305 5.5e-10 68.9 61 60.7
Nitab4.5_0000172g1360 Nicotiana tabacum HOM05D008163 ORTHO05D010305 2.1e-09 67.0 122 36.9
MD07G1062900 Malus domestica HOM05D008163 ORTHO05D010305 4.7e-09 65.9 64 51.6
Potri.016G036100 Populus trichocarpa HOM05D002649 ORTHO05D002838 1.4e-08 64.3 69 50.7
Pp3c3_3090 Physcomitrium patens HOM05D008163 ORTHO05D010305 2.3e-08 63.5 81 39.5
Sabra16G0038200 Salix brachista HOM05D002649 ORTHO05D002838 2.3e-08 63.5 69 50.7
FAN10G0940 Fragaria x ananassa HOM05D008163 ORTHO05D010305 5.2e-08 62.4 62 53.2
Glyma.17G185500 Glycine max HOM05D008163 ORTHO05D010305 2.8e-06 56.6 45 64.4


User provided reference genes

Program Settings