Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047803 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 2.1e-225 785.4 405 100.0
Rhsim06G0233900 Rhododendron simsii HOM05D004608 ORTHO05D006533 7.5e-191 670.6 405 85.9
vmacro11628 Vaccinium macrocarpon HOM05D004608 ORTHO05D006533 1.4e-189 666.4 419 83.1
Lj1C897G12 Lonicera japonica HOM05D004608 ORTHO05D006533 5.9e-188 661.0 413 83.3
Actinidia30368 Actinidia chinensis HOM05D004608 ORTHO05D006533 1.0e-187 660.2 409 84.4
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 6.1e-185 651.0 405 83.0
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 4.0e-184 648.3 407 82.8
Cc05_g15480 Coffea canephora HOM05D004608 ORTHO05D006533 3.4e-183 645.2 411 82.2
Potri.011G166100 Populus trichocarpa HOM05D004608 ORTHO05D006533 2.2e-182 642.5 411 81.8
MD03G1039600 Malus domestica HOM05D004608 ORTHO05D006533 2.8e-182 642.1 411 81.0
Ciclev10008478m.g Citrus clementina HOM05D004608 ORTHO05D006533 4.1e-181 638.3 412 80.1
CsaV3_7G021370 Cucumis sativus L. HOM05D004608 ORTHO05D006533 2.0e-180 636.0 407 81.6
MD11G1040100 Malus domestica HOM05D004608 ORTHO05D006533 4.5e-180 634.8 411 79.8
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 3.8e-179 631.7 411 79.8
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 5.0e-179 631.3 411 80.0
Atru.chr2.3848 Acer truncatum HOM05D004608 ORTHO05D006533 1.5e-178 629.8 409 80.9
DCAR_017596 Daucus carota HOM05D004608 ORTHO05D006533 3.2e-178 628.6 405 79.0
Duzib213G0525 Durio zibethinus HOM05D004608 ORTHO05D006533 7.2e-178 627.5 410 79.3
Sed0006020 Sechium edule HOM05D004608 ORTHO05D006533 1.2e-177 626.7 407 79.4
CiPaw.12G141700 Carya illinoinensis HOM05D004608 ORTHO05D006533 2.1e-177 625.9 412 79.6
Migut.M01599 Erythranthe guttata HOM05D004608 ORTHO05D006533 2.8e-177 625.5 410 78.8
CAN.G492.45 Capsicum annuum HOM05D004608 ORTHO05D006533 4.7e-177 624.8 410 78.5
PGR031G2516 Punica granatum HOM05D004608 ORTHO05D006533 6.1e-177 624.4 412 79.1
SGA_v2.0_scaffold168G38588 Striga asiatica HOM05D004608 ORTHO05D006533 1.4e-176 623.2 410 79.3
Eucgr.F03661 Eucalyptus grandis HOM05D004608 ORTHO05D006533 2.3e-176 622.5 414 79.2
HanXRQChr11g0334621 Helianthus annuus HOM05D004608 ORTHO05D006533 2.3e-176 622.5 406 79.1
Sabra16G0318300 Salix brachista HOM05D004608 ORTHO05D006533 5.2e-176 621.3 416 78.8
MELO3C013214.2 Cucumis melo HOM05D004608 ORTHO05D006533 8.8e-176 620.5 408 80.6
TWI38G2408 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 1.5e-175 619.8 411 79.1
TWI38G1265 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 2.6e-175 619.0 411 78.8
ClCG09G021670 Citrullus lanatus HOM05D004608 ORTHO05D006533 3.4e-175 618.6 429 76.7
RcHm_v2.0_Chr5g0075221 Rosa chinensis HOM05D004608 ORTHO05D006533 4.4e-175 618.2 411 78.6
Sed0022757 Sechium edule HOM05D004608 ORTHO05D006533 4.4e-175 618.2 407 79.6
Gohir.A13G130142 Gossypium hirsutum HOM05D004608 ORTHO05D006533 5.7e-175 617.8 411 77.9
Nn1g07694 Nelumbo nucifera HOM05D004608 ORTHO05D006533 1.7e-174 616.3 405 78.5
THA.LOC104815684 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 1.7e-174 616.3 415 76.9
CSS0013715 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 2.2e-174 615.9 405 80.0
Glyma.18G072500 Glycine max HOM05D004608 ORTHO05D006533 2.8e-174 615.5 411 78.3
Gohir.D13G133200 Gossypium hirsutum HOM05D004608 ORTHO05D006533 6.3e-174 614.4 411 77.4
GSVIVG01014786001 Vitis vinifera HOM05D004608 ORTHO05D006533 6.3e-174 614.4 412 77.9
COL.COLO4_07760 Corchorus olitorius HOM05D004608 ORTHO05D006533 8.3e-174 614.0 410 77.1
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 1.1e-173 613.6 411 78.3
Sp3g11470 Schrenkiella parvula HOM05D004608 ORTHO05D006533 1.1e-173 613.6 410 77.3
Sopen10g001840 Solanum pennellii HOM05D004608 ORTHO05D006533 1.1e-173 613.6 410 78.5
Solyc10g005890.3 Solanum lycopersicum HOM05D004608 ORTHO05D006533 1.4e-173 613.2 410 78.3
Cpa.g.sc12.91 Carica papaya HOM05D004608 ORTHO05D006533 1.8e-173 612.8 411 79.3
ECA236G2785 Erigeron canadensis HOM05D004608 ORTHO05D006533 4.1e-173 611.7 412 78.4
Thecc.07G005400 Theobroma cacao HOM05D004608 ORTHO05D006533 1.2e-172 610.1 411 77.9
Thhalv10020839m.g Eutrema salsugineum HOM05D004608 ORTHO05D006533 1.6e-172 609.8 410 77.1
PGSC0003DMG400014406 Solanum tuberosum HOM05D004608 ORTHO05D006533 2.0e-172 609.4 405 79.0
AT3G13235 Arabidopsis thaliana HOM05D004608 ORTHO05D006533 2.7e-172 609.0 415 77.1
EL10Ac4g07509 Beta vulgaris HOM05D004608 ORTHO05D006533 5.9e-172 607.8 411 76.6
Gorai.013G149500 Gossypium raimondii HOM05D004608 ORTHO05D006533 7.8e-172 607.4 419 75.9
HanXRQChr05g0160221 Helianthus annuus HOM05D004608 ORTHO05D006533 7.8e-172 607.4 413 77.7
AL3G25090 Arabidopsis lyrata HOM05D004608 ORTHO05D006533 1.0e-171 607.1 416 76.9
Hund22995 Selenicereus undatus HOM05D004608 ORTHO05D006533 2.3e-171 605.9 411 75.7
Haze_09894 Corylus avellana HOM05D004608 ORTHO05D006533 2.9e-171 605.5 424 76.9
Phvul.006G060300 Phaseolus vulgaris HOM05D004608 ORTHO05D006533 3.8e-171 605.1 409 77.3
Ca_14850_v3 Cicer arietinum L. HOM05D004608 ORTHO05D006533 5.0e-171 604.7 415 76.6
MSTRG.7029 Avicennia marina HOM05D004608 ORTHO05D006533 8.6e-171 604.0 411 76.4
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 8.6e-171 604.0 411 76.9
MBI14_g00953_MAGBIO Magnolia biondii HOM05D004608 ORTHO05D006533 2.5e-170 602.4 415 75.2
Gorai.009G453300 Gossypium raimondii HOM05D004608 ORTHO05D006533 4.3e-170 601.7 411 76.2
Sabra11G0139800 Salix brachista HOM05D004608 ORTHO05D006533 4.3e-170 601.7 448 73.4
CANSAT11G0422 Cannabis sativa HOM05D004608 ORTHO05D006533 9.5e-170 600.5 409 75.3
CARHR087890 Cardamine hirsuta HOM05D004608 ORTHO05D006533 9.5e-170 600.5 415 75.2
Gohir.D05G386600 Gossypium hirsutum HOM05D004608 ORTHO05D006533 9.5e-170 600.5 411 75.9
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 2.1e-169 599.4 410 76.8
TPR.G17932 Trifolium pratense HOM05D004608 ORTHO05D006533 2.1e-169 599.4 410 75.1
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 2.8e-169 599.0 410 76.8
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 2.8e-169 599.0 409 77.0
arahy.Tifrunner.gnm1.ann1.R4UTE8 Arachis hypogaea HOM05D004608 ORTHO05D006533 1.8e-168 596.3 414 76.1
Oeu026626.2 Olea europaea HOM05D004608 ORTHO05D006533 1.8e-168 596.3 420 75.2
Gohir.A04G003100 Gossypium hirsutum HOM05D004608 ORTHO05D006533 2.3e-168 595.9 411 75.2
Lsat_1_v5_gn_7_116460 Lactuca sativa HOM05D004608 ORTHO05D006533 2.3e-168 595.9 409 77.0
C03p46240 Brassica napus HOM05D004608 ORTHO05D006533 5.2e-168 594.7 419 75.9
FvH4_3g42010 Fragaria vesca HOM05D004608 ORTHO05D006533 1.5e-167 593.2 411 75.7
Dinv40894 Davidia involucrata HOM05D004608 ORTHO05D006533 2.0e-167 592.8 357 86.0
arahy.Tifrunner.gnm1.ann1.EI2AUC Arachis hypogaea HOM05D004608 ORTHO05D006533 3.4e-167 592.0 430 73.5
BolC3t16895H Brassica oleracea HOM05D004608 ORTHO05D006533 4.4e-167 591.7 421 75.5
Lj6g0013957 Lotus japonicus HOM05D004608 ORTHO05D006533 2.2e-166 589.3 409 75.6
FAN16G3187 Fragaria x ananassa HOM05D004608 ORTHO05D006533 2.9e-166 589.0 422 73.9
Lalb_Chr15g0082461 Lupinus albus HOM05D004608 ORTHO05D006533 3.7e-166 588.6 408 76.5
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 1.4e-165 586.6 410 75.9
FAN25G0703 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.4e-165 586.6 422 73.7
Carub.0003s1265 Capsella rubella HOM05D004608 ORTHO05D006533 7.0e-165 584.3 415 74.5
Aqoxy4G02317 Aquilegia oxysepala HOM05D004608 ORTHO05D006533 2.0e-164 582.8 412 73.8
Nitab4.5_0007214g0010 Nicotiana tabacum HOM05D004608 ORTHO05D006533 4.6e-164 581.6 410 75.1
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 7.8e-164 580.9 414 75.1
Aa31LG8G500 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.7e-163 579.7 424 71.7
FAN21G2140 Fragaria x ananassa HOM05D004608 ORTHO05D006533 2.3e-163 579.3 442 70.6
FAN11G3108 Fragaria x ananassa HOM05D004608 ORTHO05D006533 3.0e-163 578.9 442 70.4
Peaxi162Scf00219g00158 Petunia axillaris HOM05D004608 ORTHO05D006533 1.5e-162 576.6 415 73.5
PSO541G2325 Papaver somniferum HOM05D004608 ORTHO05D006533 2.8e-161 572.4 413 72.9
ATR0587G001 Amborella trichopoda HOM05D004608 ORTHO05D006533 3.1e-160 568.9 388 75.3
AUR62017165 Chenopodium quinoa HOM05D004608 ORTHO05D006533 1.5e-159 566.6 409 71.9
AUR62035639 Chenopodium quinoa HOM05D004608 ORTHO05D006533 1.7e-158 563.1 409 71.6
Os02g0198600 Oryza sativa ssp. japonica HOM05D004608 ORTHO05D006533 6.0e-156 554.7 416 70.4
TAR624G0837 Trochodendron aralioides HOM05D004608 ORTHO05D006533 5.6e-154 548.1 412 72.3
Manes.05G206400 Manihot esculenta HOM05D004608 ORTHO05D006533 1.2e-153 547.0 337 84.0
Hma1.2p1_0193F.1_g084100 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 2.3e-152 542.7 478 65.5
Hma1.2p1_2995F.1_g331425 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 2.3e-152 542.7 478 65.5
THA.LOC104801910 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 2.2e-150 536.2 350 78.3
THA.LOC104810298 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 2.2e-150 536.2 350 78.3
Psat5g164640 Pisum sativum HOM05D004608 ORTHO05D006533 2.9e-150 535.8 348 79.0
HPP92_021912 Vanilla planifolia HOM05D004608 ORTHO05D006533 7.1e-149 531.2 414 67.1
BolC1t05127H Brassica oleracea HOM05D004608 ORTHO05D006533 1.5e-143 513.5 415 68.7
TAR626G0684 Trochodendron aralioides HOM05D004608 ORTHO05D006533 2.6e-143 512.7 316 82.3
Zm00001eb205890 Zea mays HOM05D004608 ORTHO05D006533 5.4e-141 505.0 351 75.8
Nitab4.5_0001622g0040 Nicotiana tabacum HOM05D004608 ORTHO05D006533 1.0e-139 500.7 355 74.6
Duzib268G0270 Durio zibethinus HOM05D004608 ORTHO05D006533 1.4e-133 480.3 411 64.7
Pp3c4_20890 Physcomitrium patens HOM05D004608 ORTHO05D006533 8.7e-131 471.1 416 57.7
AagrBONN_evm.TU.Sc2ySwM_117.3155 Anthoceros agrestis HOM05D004608 ORTHO05D006533 3.0e-123 446.0 425 54.4
Oeu019694.2 Olea europaea HOM05D004608 ORTHO05D006533 2.4e-120 436.4 423 60.8
Sc03g0011700 Simmondsia chinensis HOM05D004608 ORTHO05D006533 1.0e-115 421.0 272 79.8
Oeu019695.1 Olea europaea HOM05D004608 ORTHO05D006533 1.1e-114 417.5 401 60.1
Actinidia10581 Actinidia chinensis HOM05D004608 ORTHO05D006533 7.9e-108 394.8 357 63.6
Mapoly0030s0110 Marchantia polymorpha HOM05D004608 ORTHO05D006533 2.3e-107 393.3 343 58.0
unitig_899.g15266 Utricularia gibba HOM05D004608 ORTHO05D006533 1.5e-103 380.6 324 66.4
Ah.06g180960 Amaranthus hybridus HOM05D004608 ORTHO05D006533 1.9e-101 373.6 341 60.4
CBR_g36902 Chara braunii HOM05D004608 ORTHO05D006533 3.3e-82 309.7 318 52.5
MCO11G772 Micromonas commoda HOM05D004608 ORTHO05D006533 1.8e-80 303.9 413 43.1
CDE05G0237 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 2.2e-78 297.0 255 63.9
PRCOL_00000426 Prasinoderma coloniale HOM05D004608 ORTHO05D006533 7.2e-77 292.0 425 41.4
Cre10.g447300 Chlamydomonas reinhardtii HOM05D004608 ORTHO05D006533 2.7e-68 263.5 471 36.3
Pp3c17_4800 Physcomitrium patens HOM05D004608 ORTHO05D006533 6.8e-67 258.8 464 37.3
CDE05G1663 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 3.0e-59 233.4 126 88.1
Aa31LG10G450 Aethionema arabicum HOM05D004608 ORTHO05D006533 2.0e-58 230.7 326 43.6
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 4.9e-57 226.1 134 85.1
Aa31LG10G470 Aethionema arabicum HOM05D004608 ORTHO05D006533 2.1e-52 210.7 316 41.8
Cfa022177 Carpinus fangiana HOM05D004608 ORTHO05D006533 5.4e-48 196.1 332 38.0
unitig_699.g19599 Utricularia gibba HOM05D004608 ORTHO05D006533 2.7e-47 193.7 341 35.8
CSS0026438 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 4.3e-45 186.4 105 83.8
CSS0036658 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.2e-44 184.9 105 82.9
Ah.06g180950 Amaranthus hybridus HOM05D004608 ORTHO05D006533 1.3e-41 174.9 131 68.7
AL5G25300 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 4.1e-40 169.9 112 73.2
QL05p082689 Quercus lobata HOM05D004608 ORTHO05D006533 1.8e-35 154.5 98 81.6
AUR62020809 Chenopodium quinoa HOM05D004608 ORTHO05D006533 2.7e-31 140.6 120 65.0
AL3G34310 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 2.2e-25 120.9 149 49.0
MD12G1084200 Malus domestica HOM05D004608 ORTHO05D249232 5.4e-24 116.3 65 87.7
CSS0047513 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 5.1e-22 109.8 58 82.8
VMungo0954G0002 Vigna mungo HOM05D004608 ORTHO05D432787 1.1e-19 102.1 125 51.2
CDE05G3009 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 1.4e-19 101.7 73 72.6
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 7.6e-18 95.9 102 52.9
A05p36340 Brassica napus HOM05D004608 ORTHO05D006533 3.5e-15 87.0 65 66.2
unitig_899.g15265 Utricularia gibba HOM05D004608 ORTHO05D018951 6.0e-15 86.3 96 49.0
CBR_g31527 Chara braunii HOM05D004608 ORTHO05D006533 1.9e-13 81.3 101 43.6
Ca_07476_v3 Cicer arietinum L. HOM05D004608 ORTHO05D018951 2.1e-12 77.8 53 73.6
TAR629G0124 Trochodendron aralioides HOM05D002759 ORTHO05D021026 8.1e-12 75.9 44 81.8
CDE05G1534 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 4.0e-11 73.6 43 74.4
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 1.7e-09 68.2 43 76.7
CDE05G2773 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 2.2e-09 67.8 58 62.1
Glyma.10G116100 Glycine max HOM05D004608 ORTHO05D021061 4.9e-09 66.6 50 62.0
HanXRQChr05g0144601 Helianthus annuus HOM05D004608 ORTHO05D018951 1.1e-08 65.5 36 83.3
HanXRQChr08g0229721 Helianthus annuus HOM05D004608 ORTHO05D018951 1.1e-08 65.5 36 83.3
HanXRQChr12g0367991 Helianthus annuus HOM05D004608 ORTHO05D018951 1.1e-08 65.5 36 83.3
EL10Ac5g11554 Beta vulgaris HOM05D003131 ORTHO05D003761 3.2e-08 63.9 97 43.3
Lj3C745G8 Lonicera japonica HOM05D000041 ORTHO05D000452 5.4e-08 63.2 88 48.9
QL05p082760 Quercus lobata HOM05D004608 ORTHO05D338097 9.3e-08 62.4 46 65.2
HanXRQChr16g0512931 Helianthus annuus HOM05D004608 ORTHO05D018951 2.7e-07 60.8 36 83.3
QL09p040375 Quercus lobata HOM05D000176 ORTHO05D000106 2.7e-07 60.8 42 71.4
Sopen12g018380 Solanum pennellii HOM05D000691 ORTHO05D000378 4.6e-07 60.1 120 30.0
Sopen04g010080 Solanum pennellii HOM05D000004 ORTHO05D000002 6.0e-07 59.7 120 30.0
Sopen07g021860 Solanum pennellii HOM05D000004 ORTHO05D000002 6.0e-07 59.7 120 30.0
Sopen07g015160 Solanum pennellii HOM05D000691 ORTHO05D000378 7.9e-07 59.3 120 30.0
Sopen09g023520 Solanum pennellii HOM05D000004 ORTHO05D000002 7.9e-07 59.3 120 30.0
Sopen07g004930 Solanum pennellii HOM05D000004 ORTHO05D000002 1.3e-06 58.5 120 29.2
CBR_g37104 Chara braunii HOM05D000505 ORTHO05D001303 3.0e-06 57.4 135 30.4
Sopen04g014250 Solanum pennellii HOM05D000004 ORTHO05D000378 3.9e-06 57.0 120 29.2


User provided reference genes

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