Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030344 Camellia sinensis var. sinensis HOM05D001609 ORTHO05D001469 3.6e-40 167.9 94 100.0
CSS0047798 Camellia sinensis var. sinensis HOM05D001609 ORTHO05D001469 3.6e-40 167.9 94 100.0
Actinidia27940 Actinidia chinensis HOM05D001609 ORTHO05D001469 2.0e-22 109.0 90 76.7
Actinidia27941 Actinidia chinensis HOM05D001609 ORTHO05D001469 4.9e-21 104.4 90 75.6
Actinidia17851 Actinidia chinensis HOM05D001609 ORTHO05D001469 1.4e-20 102.8 105 63.8
vmacro19484 Vaccinium macrocarpon HOM05D001609 ORTHO05D001469 1.9e-20 102.4 90 73.3
Rhsim05G0081100 Rhododendron simsii HOM05D001609 ORTHO05D001469 9.3e-20 100.1 90 71.1
vmacro19483 Vaccinium macrocarpon HOM05D001609 ORTHO05D001469 3.5e-19 98.2 90 70.0
Rhsim05G0081200 Rhododendron simsii HOM05D001609 ORTHO05D001469 1.8e-18 95.9 90 70.0
Dinv23587 Davidia involucrata HOM05D001609 ORTHO05D001469 4.1e-15 84.7 86 66.3
Dinv23588 Davidia involucrata HOM05D001609 ORTHO05D001469 4.1e-15 84.7 86 66.3
Lj2A933T25 Lonicera japonica HOM05D001609 ORTHO05D001469 1.0e-13 80.1 91 60.4
Lj9C360G10 Lonicera japonica HOM05D001609 ORTHO05D001469 1.7e-13 79.3 92 63.0
Thecc.02G096800 Theobroma cacao HOM05D001609 ORTHO05D001469 8.5e-13 77.0 79 53.2
MSTRG.16764 Avicennia marina HOM05D001609 ORTHO05D001469 9.4e-12 73.6 92 44.6
Glyma.20G010000 Glycine max HOM05D001609 ORTHO05D001469 1.2e-11 73.2 90 61.1
COL.COLO4_32695 Corchorus olitorius HOM05D001609 ORTHO05D001469 3.6e-11 71.6 78 64.1
Phvul.003G012600 Phaseolus vulgaris HOM05D001609 ORTHO05D001469 3.6e-11 71.6 90 62.2
Phvul.003G051900 Phaseolus vulgaris HOM05D001609 ORTHO05D001469 1.4e-10 69.7 90 61.1
Lj2g0015023 Lotus japonicus HOM05D001609 ORTHO05D001469 3.9e-10 68.2 89 56.2
Lj2g0016908 Lotus japonicus HOM05D001609 ORTHO05D001469 3.9e-10 68.2 91 56.0
Potri.009G106000 Populus trichocarpa HOM05D001609 ORTHO05D001469 3.9e-10 68.2 86 50.0
Glyma.07G178200 Glycine max HOM05D001609 ORTHO05D001469 5.1e-10 67.8 90 58.9
Oeu009763.1 Olea europaea HOM05D001609 ORTHO05D001469 5.1e-10 67.8 87 48.3
Glyma.02G134700 Glycine max HOM05D001609 ORTHO05D001469 6.7e-10 67.4 89 46.1
Glyma.07G178100 Glycine max HOM05D001609 ORTHO05D001469 6.7e-10 67.4 90 60.0
Lj2g0026797 Lotus japonicus HOM05D001609 ORTHO05D001469 6.7e-10 67.4 94 58.5
Lalb_Chr10g0095471 Lupinus albus HOM05D001609 ORTHO05D001469 6.7e-10 67.4 88 55.7
Medtr4g086750 Medicago truncatula HOM05D001609 ORTHO05D001469 8.8e-10 67.0 83 47.0
Psat2g166400 Pisum sativum HOM05D001609 ORTHO05D001469 8.8e-10 67.0 82 50.0
Psat7g121720 Pisum sativum HOM05D001609 ORTHO05D001469 8.8e-10 67.0 82 50.0
HanXRQChr16g0511251 Helianthus annuus HOM05D001609 ORTHO05D001469 1.1e-09 66.6 89 49.4
Psat7g122840 Pisum sativum HOM05D001609 ORTHO05D001469 1.1e-09 66.6 82 50.0
Prupe.8G116900 Prunus persica HOM05D001609 ORTHO05D001469 1.5e-09 66.2 85 47.1
Medtr4g086730 Medicago truncatula HOM05D001609 ORTHO05D001469 2.0e-09 65.9 82 46.3
Prupe.8G116800 Prunus persica HOM05D001609 ORTHO05D001469 2.5e-09 65.5 85 48.2
Glyma.07G178300 Glycine max HOM05D001609 ORTHO05D001469 3.3e-09 65.1 81 61.7
Medtr4g086710 Medicago truncatula HOM05D001609 ORTHO05D001469 3.3e-09 65.1 83 44.6
Glyma.07G210300 Glycine max HOM05D001609 ORTHO05D001469 4.3e-09 64.7 84 57.1
Hma1.2p1_3161F.1_g333470 Hydrangea macrophylla HOM05D001609 ORTHO05D001469 4.3e-09 64.7 72 63.9
TPR.G16273 Trifolium pratense HOM05D001609 ORTHO05D001469 4.3e-09 64.7 82 45.1
Ca_18664_v3 Cicer arietinum L. HOM05D001609 ORTHO05D001469 5.7e-09 64.3 83 45.8
Hma1.2p1_0584F.1_g183100 Hydrangea macrophylla HOM05D001609 ORTHO05D001469 5.7e-09 64.3 73 63.0
MD10G1089800 Malus domestica HOM05D001609 ORTHO05D001469 7.4e-09 63.9 88 47.7
Medtr4g086740 Medicago truncatula HOM05D001609 ORTHO05D001469 7.4e-09 63.9 80 46.2
Oeu009129.1 Olea europaea HOM05D001609 ORTHO05D001469 7.4e-09 63.9 87 47.1
Oeu009764.1 Olea europaea HOM05D001609 ORTHO05D001469 9.7e-09 63.5 87 47.1
Prupe.8G117000 Prunus persica HOM05D001609 ORTHO05D001469 9.7e-09 63.5 85 45.9
COL.COLO4_32694 Corchorus olitorius HOM05D001609 ORTHO05D001469 1.7e-08 62.8 94 44.7
Migut.N01201 Erythranthe guttata HOM05D001609 ORTHO05D001469 1.7e-08 62.8 89 43.8
Thecc.02G096900 Theobroma cacao HOM05D001609 ORTHO05D001469 1.7e-08 62.8 95 43.2
CANSAT25G3068 Cannabis sativa HOM05D001609 ORTHO05D001469 2.2e-08 62.4 88 56.8
RcHm_v2.0_Chr6g0259001 Rosa chinensis HOM05D001609 ORTHO05D001469 2.8e-08 62.0 82 48.8
CANSAT25G3563 Cannabis sativa HOM05D001609 ORTHO05D001469 3.7e-08 61.6 87 55.2
FAN27G3067 Fragaria x ananassa HOM05D001609 ORTHO05D001469 4.8e-08 61.2 89 43.8
RcHm_v2.0_Chr6g0258981 Rosa chinensis HOM05D001609 ORTHO05D001469 4.8e-08 61.2 88 45.5
CANSAT25G0092 Cannabis sativa HOM05D001609 ORTHO05D001469 6.3e-08 60.8 88 55.7
CANSAT25G0586 Cannabis sativa HOM05D001609 ORTHO05D001469 6.3e-08 60.8 88 55.7
Ciclev10029852m.g Citrus clementina HOM05D001609 ORTHO05D001469 6.3e-08 60.8 95 38.9
Duzib132G0228 Durio zibethinus HOM05D001609 ORTHO05D001469 6.3e-08 60.8 93 44.1
QL11p037498 Quercus lobata HOM05D001609 ORTHO05D001469 6.3e-08 60.8 84 46.4
QL11p037395 Quercus lobata HOM05D001609 ORTHO05D001469 8.2e-08 60.5 81 61.7
TPR.G899 Trifolium pratense HOM05D001609 ORTHO05D001469 8.2e-08 60.5 81 43.2
Ciclev10029377m.g Citrus clementina HOM05D001609 ORTHO05D001469 1.4e-07 59.7 94 41.5
Ciclev10030287m.g Citrus clementina HOM05D001609 ORTHO05D001469 1.4e-07 59.7 92 39.1
Oeu057679.1 Olea europaea HOM05D001609 ORTHO05D001469 1.4e-07 59.7 86 43.0
QL11p038185 Quercus lobata HOM05D001609 ORTHO05D001469 1.4e-07 59.7 84 45.2
Peaxi162Scf00016g01628 Petunia axillaris HOM05D001609 ORTHO05D001469 1.8e-07 59.3 86 38.4
QL09p009702 Quercus lobata HOM05D001609 ORTHO05D001469 1.8e-07 59.3 85 44.7
Duzib132G0267 Durio zibethinus HOM05D001609 ORTHO05D001469 2.4e-07 58.9 88 43.2
Gohir.A13G038100 Gossypium hirsutum HOM05D001609 ORTHO05D001469 2.4e-07 58.9 78 47.4
Solyc01g108360.4 Solanum lycopersicum HOM05D001609 ORTHO05D001469 2.4e-07 58.9 88 38.6
Ciclev10029789m.g Citrus clementina HOM05D001609 ORTHO05D001469 3.1e-07 58.5 94 40.4
FvH4_2g10150 Fragaria vesca HOM05D001609 ORTHO05D001469 3.1e-07 58.5 89 42.7
FAN24G0445 Fragaria x ananassa HOM05D001609 ORTHO05D001469 3.1e-07 58.5 89 42.7
FAN15G3688 Fragaria x ananassa HOM05D001609 ORTHO05D001469 5.3e-07 57.8 89 42.7
FAN20G0715 Fragaria x ananassa HOM05D001609 ORTHO05D001469 5.3e-07 57.8 89 42.7
FAN27G0506 Fragaria x ananassa HOM05D001609 ORTHO05D001469 6.9e-07 57.4 89 42.7
Gorai.008G025700 Gossypium raimondii HOM05D001609 ORTHO05D001469 6.9e-07 57.4 82 40.2
FvH4_2g06780 Fragaria vesca HOM05D001609 ORTHO05D001469 9.1e-07 57.0 89 42.7
FAN24G2081 Fragaria x ananassa HOM05D001609 ORTHO05D001469 9.1e-07 57.0 89 42.7
Hma1.2p1_1589F.1_g292430 Hydrangea macrophylla HOM05D001609 ORTHO05D001469 9.1e-07 57.0 81 51.9
Atru.chr5.2779 Acer truncatum HOM05D001609 ORTHO05D001469 1.2e-06 56.6 92 39.1
ECA246G1883 Erigeron canadensis HOM05D001609 ORTHO05D001469 1.2e-06 56.6 72 55.6
Atru.chr5.2792 Acer truncatum HOM05D001609 ORTHO05D001469 1.5e-06 56.2 92 39.1
FAN15G0118 Fragaria x ananassa HOM05D001609 ORTHO05D001469 1.5e-06 56.2 92 41.3
Gohir.A13G038300 Gossypium hirsutum HOM05D001609 ORTHO05D001469 1.5e-06 56.2 86 43.0
Gorai.013G041200 Gossypium raimondii HOM05D001609 ORTHO05D001469 1.5e-06 56.2 86 43.0
Sabra09G0081000 Salix brachista HOM05D001609 ORTHO05D001469 1.5e-06 56.2 87 44.8
CAN.G322.26 Capsicum annuum HOM05D001609 ORTHO05D001469 2.6e-06 55.5 87 41.4
Nitab4.5_0005583g0030 Nicotiana tabacum HOM05D001609 ORTHO05D001469 2.6e-06 55.5 87 39.1
Atru.chr5.2782 Acer truncatum HOM05D001609 ORTHO05D001469 3.4e-06 55.1 91 41.8
Atru.chr5.2797 Acer truncatum HOM05D001609 ORTHO05D001469 3.4e-06 55.1 91 41.8
Cfa005433 Carpinus fangiana HOM05D001609 ORTHO05D001469 3.4e-06 55.1 89 40.4
PGSC0003DMG402025807 Solanum tuberosum HOM05D001609 ORTHO05D001469 3.4e-06 55.1 94 38.3
Cfa005435 Carpinus fangiana HOM05D001609 ORTHO05D001469 4.5e-06 54.7 89 40.4
Gohir.A13G038800 Gossypium hirsutum HOM05D001609 ORTHO05D001469 4.5e-06 54.7 106 37.7
Gohir.D13G037300 Gossypium hirsutum HOM05D001609 ORTHO05D001469 4.5e-06 54.7 102 39.2
Hund06185 Selenicereus undatus HOM05D001609 ORTHO05D001469 4.5e-06 54.7 52 53.8
Duzib132G1232 Durio zibethinus HOM05D001609 ORTHO05D001469 5.9e-06 54.3 79 44.3
TPR.G16254 Trifolium pratense HOM05D001609 ORTHO05D001469 7.7e-06 53.9 88 38.6


User provided reference genes

Program Settings