Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047787 Camellia sinensis var. sinensis HOM05D005435 ORTHO05D007370 2.2e-32 141.7 75 100.0
CSS0041575 Camellia sinensis var. sinensis HOM05D005435 ORTHO05D007370 2.3e-29 131.7 75 93.3
Actinidia33394 Actinidia chinensis HOM05D005435 ORTHO05D007370 1.1e-10 69.7 39 97.4
CSS0000486 Camellia sinensis var. sinensis HOM05D005435 ORTHO05D007370 2.4e-10 68.6 39 97.4
vmacro16401 Vaccinium macrocarpon HOM05D005435 ORTHO05D007370 2.0e-09 65.5 39 89.7
Dinv29103 Davidia involucrata HOM05D005435 ORTHO05D007370 3.5e-09 64.7 39 89.7
Rhsim12G0137200 Rhododendron simsii HOM05D005435 ORTHO05D007370 4.5e-09 64.3 39 87.2
Dinv03347 Davidia involucrata HOM05D005435 ORTHO05D007370 5.9e-09 63.9 39 87.2
Cc06_g19340 Coffea canephora HOM05D005435 ORTHO05D007370 1.0e-08 63.2 39 87.2
SGA_v2.0_scaffold105G30289 Striga asiatica HOM05D005435 ORTHO05D007370 2.2e-08 62.0 39 79.5
AUR62014241 Chenopodium quinoa HOM05D005435 ORTHO05D007370 6.5e-08 60.5 39 82.1
Migut.J01655 Erythranthe guttata HOM05D005435 ORTHO05D007370 6.5e-08 60.5 39 79.5
Lj3C986G3 Lonicera japonica HOM05D005435 ORTHO05D007370 6.5e-08 60.5 39 82.1
EL10Ac7g16635 Beta vulgaris HOM05D005435 ORTHO05D007370 1.1e-07 59.7 39 79.5
HanXRQChr03g0082591 Helianthus annuus HOM05D000338 ORTHO05D000698 1.1e-07 59.7 62 54.8
Oeu022974.1 Olea europaea HOM05D005435 ORTHO05D007370 1.5e-07 59.3 39 79.5
Thecc.05G067100 Theobroma cacao HOM05D005435 ORTHO05D007370 1.5e-07 59.3 39 82.1
CiPaw.09G172100 Carya illinoinensis HOM05D005435 ORTHO05D007370 1.9e-07 58.9 39 79.5
AUR62038499 Chenopodium quinoa HOM05D005435 ORTHO05D007370 1.9e-07 58.9 39 79.5
Gohir.A01G141700 Gossypium hirsutum HOM05D005435 ORTHO05D007370 2.5e-07 58.5 39 82.1
Gohir.D01G130500 Gossypium hirsutum HOM05D005435 ORTHO05D007370 2.5e-07 58.5 39 82.1
Gorai.002G161900 Gossypium raimondii HOM05D005435 ORTHO05D007370 2.5e-07 58.5 39 82.1
Manes.09G066100 Manihot esculenta HOM05D005435 ORTHO05D007370 3.2e-07 58.2 40 75.0
QL07p043246 Quercus lobata HOM05D005435 ORTHO05D007370 3.2e-07 58.2 37 81.1
HanXRQChr14g0432671 Helianthus annuus HOM05D000338 ORTHO05D001259 5.5e-07 57.4 55 60.0
MD12G1112900 Malus domestica HOM05D005435 ORTHO05D007370 5.5e-07 57.4 39 76.9
Prupe.6G232000 Prunus persica HOM05D005435 ORTHO05D007370 5.5e-07 57.4 39 76.9
MD04G1093200 Malus domestica HOM05D005435 ORTHO05D007370 7.2e-07 57.0 39 74.4
Manes.08G010700 Manihot esculenta HOM05D005435 ORTHO05D007370 7.2e-07 57.0 39 74.4
MSTRG.10790 Avicennia marina HOM05D005435 ORTHO05D007370 1.6e-06 55.8 37 73.0
Cpa.g.c35476 Carica papaya HOM05D005435 ORTHO05D007370 1.6e-06 55.8 39 74.4
Cpa.g.sc738.3 Carica papaya HOM05D005435 ORTHO05D007370 1.6e-06 55.8 39 74.4
Cfa017616 Carpinus fangiana HOM05D005435 ORTHO05D007370 1.6e-06 55.8 39 74.4
Lj1g0010500 Lotus japonicus HOM05D005435 ORTHO05D007370 1.6e-06 55.8 39 76.9
Sed0000088 Sechium edule HOM05D005435 ORTHO05D007370 1.6e-06 55.8 39 74.4
TPR.G32806 Trifolium pratense HOM05D005435 ORTHO05D007370 1.6e-06 55.8 39 71.8
TAR633G1880 Trochodendron aralioides HOM05D005435 ORTHO05D007370 1.6e-06 55.8 39 74.4
Medtr7g101940 Medicago truncatula HOM05D005435 ORTHO05D007370 2.1e-06 55.5 39 71.8
TWI53G0628 Tripterygium wilfordii HOM05D005435 ORTHO05D007370 2.7e-06 55.1 39 71.8
arahy.Tifrunner.gnm1.ann1.2UY3HI Arachis hypogaea HOM05D005435 ORTHO05D007370 3.6e-06 54.7 39 71.8
arahy.Tifrunner.gnm1.ann1.3ZC2I8 Arachis hypogaea HOM05D005435 ORTHO05D007370 3.6e-06 54.7 39 69.2
Haze_20541 Corylus avellana HOM05D005435 ORTHO05D007370 3.6e-06 54.7 39 74.4
MELO3C024475.2 Cucumis melo HOM05D005435 ORTHO05D007370 3.6e-06 54.7 39 71.8
CsaV3_6G039980 Cucumis sativus L. HOM05D005435 ORTHO05D007370 3.6e-06 54.7 39 71.8
PSO063G1591 Papaver somniferum HOM05D005435 ORTHO05D007370 3.6e-06 54.7 39 71.8
Peaxi162Scf00454g00414 Petunia axillaris HOM05D005435 ORTHO05D007370 3.6e-06 54.7 37 75.7
Psat3g042640 Pisum sativum HOM05D005435 ORTHO05D007370 3.6e-06 54.7 39 69.2
SalBow6G0607 Salvia bowleyana HOM05D005435 ORTHO05D007370 3.6e-06 54.7 39 66.7
Duzib093G0272 Durio zibethinus HOM05D005435 ORTHO05D007370 4.7e-06 54.3 39 74.4
Glyma.03G183400 Glycine max HOM05D005435 ORTHO05D007370 4.7e-06 54.3 39 71.8
Sc20g0005470 Simmondsia chinensis HOM05D005435 ORTHO05D007370 4.7e-06 54.3 39 71.8
Ca_08861_v3 Cicer arietinum L. HOM05D005435 ORTHO05D007370 6.1e-06 53.9 39 74.4
ClCG04G009400 Citrullus lanatus HOM05D005435 ORTHO05D007370 8.0e-06 53.5 39 71.8
PGR142G0097 Punica granatum HOM05D005435 ORTHO05D007370 8.0e-06 53.5 39 74.4


User provided reference genes

Program Settings