Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047786 Camellia sinensis var. sinensis HOM05D011745 ORTHO05D012903 1.9e-159 565.8 295 100.0
Actinidia01030 Actinidia chinensis HOM05D011745 ORTHO05D012903 5.8e-68 261.9 227 64.3
Dinv34535 Davidia involucrata HOM05D011745 ORTHO05D012903 1.9e-66 256.9 244 61.1
Actinidia01029 Actinidia chinensis HOM05D011745 ORTHO05D012903 1.2e-65 254.2 227 63.4
Dinv16893 Davidia involucrata HOM05D011745 ORTHO05D012903 3.9e-64 249.2 241 60.6
Dinv16890 Davidia involucrata HOM05D011745 ORTHO05D012903 2.5e-63 246.5 233 59.7
Dinv16888 Davidia involucrata HOM05D011745 ORTHO05D012903 1.3e-59 234.2 220 59.5
Hma1.2p1_0502F.1_g167910 Hydrangea macrophylla HOM05D011745 ORTHO05D012903 1.6e-54 217.2 238 53.4
Hma1.2p1_0502F.1_g167890 Hydrangea macrophylla HOM05D011745 ORTHO05D012903 4.8e-38 162.5 222 45.9
Hma1.2p1_3050F.1_g332133 Hydrangea macrophylla HOM05D011745 ORTHO05D012903 4.8e-38 162.5 222 45.9
CSS0018771 Camellia sinensis var. sinensis HOM05D011745 ORTHO05D012903 2.6e-36 156.8 227 46.3
Atru.chr1.875 Acer truncatum HOM05D011745 ORTHO05D012903 1.1e-31 141.4 229 41.5
Atru.chr1.886 Acer truncatum HOM05D011745 ORTHO05D012903 5.7e-31 139.0 234 39.3
CSS0049062 Camellia sinensis var. sinensis HOM05D011745 ORTHO05D012903 3.7e-30 136.3 237 43.5
TAR375G0010 Trochodendron aralioides HOM05D000501 ORTHO05D012903 1.9e-18 97.4 251 34.3
Thecc.01G399500 Theobroma cacao HOM05D000480 ORTHO05D000313 1.7e-14 84.3 247 28.3
Thecc.01G398800 Theobroma cacao HOM05D000480 ORTHO05D000313 3.1e-13 80.1 245 24.9
CAN.G1585.3 Capsicum annuum HOM05D000480 ORTHO05D000313 4.1e-13 79.7 224 32.6
Atru.chr1.898 Acer truncatum HOM05D023178 ORTHO05D021064 5.3e-13 79.3 180 30.6
Dinv16885 Davidia involucrata HOM05D021861 ORTHO05D024722 2.0e-12 77.4 95 51.6
Nn6g33764 Nelumbo nucifera HOM05D000448 ORTHO05D000291 4.5e-12 76.3 218 30.3
Atru.chr1.878 Acer truncatum HOM05D011745 ORTHO05D012903 5.9e-12 75.9 135 36.3
Thecc.01G400000 Theobroma cacao HOM05D000480 ORTHO05D000313 2.2e-11 73.9 245 24.5
TWI23G1193 Tripterygium wilfordii HOM05D000480 ORTHO05D000313 1.1e-10 71.6 220 25.9
CARHR139950 Cardamine hirsuta HOM05D000480 ORTHO05D000313 1.5e-10 71.2 269 26.4
TAR375G0651 Trochodendron aralioides HOM05D000480 ORTHO05D000313 1.5e-10 71.2 276 29.0
MD07G1241300 Malus domestica HOM05D000480 ORTHO05D000313 1.9e-10 70.9 214 28.5
TAR375G1069 Trochodendron aralioides HOM05D000480 ORTHO05D000313 1.9e-10 70.9 282 27.3
Potri.014G051100 Populus trichocarpa HOM05D000448 ORTHO05D000313 2.5e-10 70.5 221 25.3
Ciclev10005878m.g Citrus clementina HOM05D023178 ORTHO05D021064 4.2e-10 69.7 184 32.6
FvH4_7g26700 Fragaria vesca HOM05D000448 ORTHO05D000313 5.5e-10 69.3 223 29.6
Hma1.2p1_0632F.1_g192440 Hydrangea macrophylla HOM05D000448 ORTHO05D000313 7.2e-10 68.9 259 29.0
Gohir.A08G057300 Gossypium hirsutum HOM05D000480 ORTHO05D000313 1.2e-09 68.2 249 22.9
Duzib138G0994 Durio zibethinus HOM05D000480 ORTHO05D000291 2.1e-09 67.4 252 23.8
GSVIVG01024471001 Vitis vinifera HOM05D000480 ORTHO05D000313 2.1e-09 67.4 219 29.7
Gohir.A08G057200 Gossypium hirsutum HOM05D000448 ORTHO05D000313 4.7e-09 66.2 247 23.1
Gohir.D08G066600 Gossypium hirsutum HOM05D000480 ORTHO05D000313 1.0e-08 65.1 214 23.4
Manes.06G129901 Manihot esculenta HOM05D000448 ORTHO05D000291 1.0e-08 65.1 231 30.3
Gorai.004G069200 Gossypium raimondii HOM05D000480 ORTHO05D000313 1.8e-08 64.3 214 23.4
Hma1.2p1_2573F.1_g324630 Hydrangea macrophylla HOM05D000448 ORTHO05D000291 2.3e-08 63.9 207 30.4
Carub.0004s2730 Capsella rubella HOM05D000480 ORTHO05D000313 3.0e-08 63.5 226 29.2
Oeu037434.1 Olea europaea HOM05D000480 ORTHO05D000313 3.0e-08 63.5 251 28.7
MD01G1175400 Malus domestica HOM05D000480 ORTHO05D000313 4.0e-08 63.2 222 26.1
CiPaw.14G018700 Carya illinoinensis HOM05D000480 ORTHO05D000313 5.2e-08 62.8 240 22.1
Cc00_g19340 Coffea canephora HOM05D000448 ORTHO05D000291 5.2e-08 62.8 204 27.9
Thhalv10001761m.g Eutrema salsugineum HOM05D000480 ORTHO05D000313 5.2e-08 62.8 231 29.4
Hma1.2p1_2512F.1_g323650 Hydrangea macrophylla HOM05D000448 ORTHO05D000291 6.8e-08 62.4 227 28.6
Potri.015G111300 Populus trichocarpa HOM05D000448 ORTHO05D000313 6.8e-08 62.4 231 28.1
BolC4t22202H Brassica oleracea HOM05D000480 ORTHO05D000313 8.8e-08 62.0 230 28.3
COL.COLO4_37309 Corchorus olitorius HOM05D000448 ORTHO05D000291 8.8e-08 62.0 227 28.2
Haze_22225 Corylus avellana HOM05D004991 ORTHO05D006690 8.8e-08 62.0 223 29.6
MBI11_g10514_MAGBIO Magnolia biondii HOM05D000448 ORTHO05D000291 1.2e-07 61.6 193 29.5
Prupe.2G270400 Prunus persica HOM05D000480 ORTHO05D000313 1.2e-07 61.6 219 28.3
BcaC02g12275 Brassica carinata HOM05D000480 ORTHO05D000313 1.5e-07 61.2 230 28.7
C04p05720 Brassica napus HOM05D000480 ORTHO05D000313 1.5e-07 61.2 230 28.7
CANSAT56G2348 Cannabis sativa HOM05D000480 ORTHO05D000313 1.5e-07 61.2 218 29.4
Thecc.03G145500 Theobroma cacao HOM05D000480 ORTHO05D000313 1.5e-07 61.2 244 28.7
Actinidia25224 Actinidia chinensis HOM05D000448 ORTHO05D000291 2.0e-07 60.8 211 27.5
Gorai.004G068800 Gossypium raimondii HOM05D000480 ORTHO05D000313 2.0e-07 60.8 214 23.4
BcaB02g08854 Brassica carinata HOM05D000480 ORTHO05D000313 2.6e-07 60.5 292 27.4
A05p04900 Brassica napus HOM05D000480 ORTHO05D000313 2.6e-07 60.5 227 29.1
AUR62007588 Chenopodium quinoa HOM05D000480 ORTHO05D000313 2.6e-07 60.5 227 30.4
GSVIVG01030638001 Vitis vinifera HOM05D000480 ORTHO05D000313 2.6e-07 60.5 226 26.1
Ciclev10005082m.g Citrus clementina HOM05D023178 ORTHO05D021064 3.4e-07 60.1 195 29.2
Eucgr.D01209 Eucalyptus grandis HOM05D000480 ORTHO05D000313 3.4e-07 60.1 247 27.9
Actinidia21630 Actinidia chinensis HOM05D000480 ORTHO05D000313 5.7e-07 59.3 252 27.4
Manes.08G063800 Manihot esculenta HOM05D000480 ORTHO05D000313 5.7e-07 59.3 250 26.8
Gohir.D08G066500 Gossypium hirsutum HOM05D000480 ORTHO05D000313 7.5e-07 58.9 214 22.9
Potri.012G113800 Populus trichocarpa HOM05D000480 ORTHO05D000313 7.5e-07 58.9 219 27.9
Ciclev10005716m.g Citrus clementina HOM05D023178 ORTHO05D021064 9.8e-07 58.5 97 35.1
Cfa014370 Carpinus fangiana HOM05D000480 ORTHO05D000313 1.3e-06 58.2 224 27.2
EL10Ac6g15537 Beta vulgaris HOM05D000480 ORTHO05D000313 1.7e-06 57.8 205 27.8
Thecc.01G398300 Theobroma cacao HOM05D000480 ORTHO05D000313 1.7e-06 57.8 167 29.9
TAR375G0399 Trochodendron aralioides HOM05D000480 ORTHO05D000313 2.2e-06 57.4 153 34.6
CSS0042396 Camellia sinensis var. sinensis HOM05D011745 ORTHO05D012903 2.8e-06 57.0 50 62.0
Cfa013603 Carpinus fangiana HOM05D000480 ORTHO05D000313 2.8e-06 57.0 222 29.3
RcHm_v2.0_Chr1g0373281 Rosa chinensis HOM05D000480 ORTHO05D000313 2.8e-06 57.0 217 27.6
Cpa.g.sc13.223 Carica papaya HOM05D000480 ORTHO05D000313 3.7e-06 56.6 220 26.8
MBI01_g06190_MAGBIO Magnolia biondii HOM05D000448 ORTHO05D000291 3.7e-06 56.6 170 28.2
PSO782G5375 Papaver somniferum HOM05D000480 ORTHO05D000313 3.7e-06 56.6 241 26.1
Cpa.g.sc13.225 Carica papaya HOM05D000480 ORTHO05D000313 4.8e-06 56.2 208 27.9
CiPaw.14G019000 Carya illinoinensis HOM05D000448 ORTHO05D015936 4.8e-06 56.2 234 23.5
MSTRG.10528 Avicennia marina HOM05D000448 ORTHO05D000291 6.3e-06 55.8 226 26.5
Lj7A549T53 Lonicera japonica HOM05D000448 ORTHO05D000313 6.3e-06 55.8 202 31.7
Cpa.g.sc13.230 Carica papaya HOM05D000448 ORTHO05D000291 8.3e-06 55.5 212 25.9
Haze_12836 Corylus avellana HOM05D000480 ORTHO05D000313 8.3e-06 55.5 225 26.2


User provided reference genes

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