Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 0.0e+00 1441.8 728 100.0
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 0.0e+00 1213.0 726 84.7
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 0.0e+00 1201.4 761 81.5
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 0.0e+00 1179.9 729 82.2
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 0.0e+00 1177.2 704 85.2
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 0.0e+00 1175.6 787 77.1
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 0.0e+00 1159.1 727 81.2
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 0.0e+00 1159.1 807 74.7
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 0.0e+00 1141.3 728 79.5
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 0.0e+00 1116.7 745 77.0
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 0.0e+00 1114.0 722 78.1
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 0.0e+00 1101.3 728 75.1
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 0.0e+00 1097.4 731 76.7
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 0.0e+00 1089.7 727 76.1
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 0.0e+00 1085.1 724 74.3
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 0.0e+00 1083.2 729 74.5
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 0.0e+00 1081.2 727 74.8
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 0.0e+00 1080.5 727 75.4
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 0.0e+00 1079.7 721 75.6
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 6.0e-311 1070.5 727 73.9
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 1.3e-310 1069.3 729 73.7
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 1.1e-309 1066.2 728 73.6
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 1.9e-309 1065.4 711 75.5
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 7.1e-309 1063.5 732 72.8
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 9.3e-309 1063.1 728 73.5
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.6e-308 1062.4 728 73.1
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 1.6e-308 1062.4 711 75.1
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 1.3e-307 1059.3 733 73.0
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 1.3e-307 1059.3 730 73.3
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 1.7e-307 1058.9 729 74.1
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 2.3e-307 1058.5 704 75.6
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 3.9e-307 1057.7 728 73.2
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.1e-306 1056.2 731 73.3
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 1.5e-306 1055.8 729 73.3
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 2.5e-306 1055.0 733 72.7
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 9.6e-306 1053.1 728 73.6
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 2.8e-305 1051.6 728 72.7
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 1.2e-303 1046.2 728 72.7
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 2.0e-303 1045.4 723 73.2
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 2.0e-303 1045.4 705 74.8
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 4.9e-302 1040.8 728 73.1
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 9.3e-301 1036.6 722 73.5
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 5.1e-299 1030.8 720 72.4
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 6.7e-299 1030.4 699 74.2
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.1e-298 1029.6 683 76.4
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 1.5e-298 1029.2 724 70.6
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 1.9e-298 1028.9 756 70.6
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 5.6e-298 1027.3 729 71.7
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 3.7e-297 1024.6 746 69.8
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 4.8e-297 1024.2 707 74.4
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 3.1e-296 1021.5 721 73.1
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 5.3e-296 1020.8 725 71.9
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 1.2e-295 1019.6 728 71.0
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 3.8e-294 1014.6 727 71.5
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 4.9e-294 1014.2 728 70.6
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 3.5e-292 1008.1 728 70.2
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 1.1e-290 1003.0 727 70.7
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 1.9e-290 1002.3 727 70.7
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 4.3e-290 1001.1 728 70.1
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 1.3e-289 999.6 719 70.4
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 3.4e-287 991.5 725 69.5
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 5.9e-287 990.7 703 71.6
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 1.3e-286 989.6 682 74.2
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 1.7e-286 989.2 698 70.5
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 8.4e-286 986.9 724 69.1
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 2.5e-285 985.3 727 68.5
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 4.2e-285 984.6 728 68.8
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 5.5e-285 984.2 718 68.9
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 7.2e-285 983.8 728 68.8
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 7.2e-285 983.8 729 68.2
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 9.3e-285 983.4 702 70.7
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 2.7e-284 981.9 709 70.4
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 1.8e-283 979.2 728 69.4
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 1.9e-282 975.7 727 68.1
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 2.5e-282 975.3 727 68.5
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 4.3e-282 974.5 552 91.8
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 4.3e-282 974.5 678 73.2
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 9.7e-282 973.4 700 70.0
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 6.9e-280 967.2 741 67.2
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 6.9e-280 967.2 612 84.0
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 1.0e-278 963.4 728 66.9
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 1.3e-278 963.0 729 67.8
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 1.7e-278 962.6 703 69.8
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 6.5e-278 960.7 700 68.7
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 8.5e-278 960.3 697 68.9
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 8.5e-278 960.3 706 70.0
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 1.4e-277 959.5 739 66.4
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 4.6e-276 954.5 729 67.1
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 7.9e-276 953.7 700 68.7
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 3.3e-274 948.3 705 67.9
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 5.7e-274 947.6 655 74.0
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 8.2e-273 943.7 641 75.0
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 1.8e-272 942.6 669 72.5
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 2.6e-271 938.7 707 67.8
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 3.8e-270 934.9 702 67.5
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 3.8e-270 934.9 702 67.5
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 3.8e-270 934.9 732 66.0
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 5.0e-270 934.5 702 67.4
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 5.0e-270 934.5 735 65.3
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 5.5e-269 931.0 566 86.7
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 9.4e-269 930.2 728 65.2
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 1.8e-267 926.0 712 66.7
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 6.7e-267 924.1 716 65.9
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 1.1e-266 923.3 729 66.7
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 1.5e-266 922.9 728 64.1
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 1.8e-264 916.0 703 66.6
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 2.4e-264 915.6 730 65.5
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 3.8e-262 908.3 727 63.8
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 1.5e-261 906.4 705 65.8
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 4.7e-260 901.4 613 77.3
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 8.0e-260 900.6 748 63.2
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 2.9e-254 882.1 709 64.9
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 9.4e-253 877.1 702 64.2
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 3.0e-251 872.1 730 63.7
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 3.1e-248 862.1 718 62.5
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 9.5e-245 850.5 719 62.7
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 3.0e-243 845.5 723 62.5
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 6.3e-241 837.8 652 68.6
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 3.7e-233 812.0 580 72.9
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 1.8e-232 809.7 709 61.5
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 1.6e-231 806.6 701 59.6
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 6.6e-230 801.2 729 58.2
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 1.9e-224 783.1 617 66.9
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 4.7e-220 768.5 725 58.1
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 1.7e-209 733.4 577 67.1
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 7.3e-205 718.0 706 54.8
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 3.9e-198 695.7 673 55.9
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 6.2e-196 688.3 696 54.2
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 1.3e-190 670.6 500 69.0
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 3.9e-182 642.5 707 49.8
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 1.6e-159 567.4 609 53.5
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 2.8e-148 530.0 870 39.2
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 1.0e-142 511.5 335 75.5
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.8e-132 476.9 260 94.2
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.1e-127 460.7 264 89.8
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 8.9e-126 455.3 443 58.0
SHI00527 Sapria himalayana HOM05D004359 ORTHO05D005052 6.6e-105 386.0 367 55.6
BcaC06g35467 Brassica carinata HOM05D004359 ORTHO05D005052 6.6e-89 332.8 322 55.9
unitig_899.g14876 Utricularia gibba HOM05D004359 ORTHO05D005052 1.5e-88 331.6 495 40.2
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 1.3e-63 248.8 549 35.2
BolC5t32353H Brassica oleracea HOM05D004359 ORTHO05D005052 2.2e-60 238.0 288 47.9
FAN17G0101 Fragaria x ananassa HOM05D004359 ORTHO05D005052 5.9e-53 213.4 143 72.0
SEGI_13286 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 1.0e-52 212.6 188 59.6
BcaC03g15924 Brassica carinata HOM05D004359 ORTHO05D005052 1.0e-41 176.0 322 38.5
BolC2t09698H Brassica oleracea HOM05D004359 ORTHO05D005052 2.0e-40 171.8 303 38.3
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 2.0e-40 171.8 137 65.0
SHI00526 Sapria himalayana HOM05D004359 ORTHO05D005052 3.3e-40 171.0 122 70.5
C05p36300 Brassica napus HOM05D004359 ORTHO05D005052 1.8e-33 148.7 126 59.5
TPR.G734 Trifolium pratense HOM05D004359 ORTHO05D005052 2.6e-32 144.8 184 45.1
BcaC05g27642 Brassica carinata HOM05D004359 ORTHO05D000212 5.7e-32 143.7 116 62.1
SHI00525 Sapria himalayana HOM05D004359 ORTHO05D005052 1.1e-30 139.4 179 46.9
Hma1.2p1_0549F.1_g177020 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 5.9e-29 133.7 121 62.8
Phvul.007G263800 Phaseolus vulgaris HOM05D004359 ORTHO05D050299 4.8e-23 114.0 322 31.4
RcHm_v2.0_Chr4g0393591 Rosa chinensis HOM05D004359 ORTHO05D005052 9.4e-19 99.8 75 62.7
RcHm_v2.0_Chr4g0393611 Rosa chinensis HOM05D004359 ORTHO05D005052 1.2e-18 99.4 88 58.0
FAN13G0820 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.5e-16 92.4 76 55.3
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.5e-16 92.4 76 55.3
Glyma.19G081300 Glycine max HOM05D004359 ORTHO05D005052 2.2e-15 88.6 85 51.8
Sed0019342 Sechium edule HOM05D004359 ORTHO05D050299 3.7e-15 87.8 58 72.4
HPP92_015629 Vanilla planifolia HOM05D004359 ORTHO05D005052 3.5e-13 81.3 65 55.4
COL.COLO4_15960 Corchorus olitorius HOM05D004359 ORTHO05D005052 3.3e-11 74.7 61 60.7
COL.COLO4_21093 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.5e-08 65.9 37 83.8


User provided reference genes

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