Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047764 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.4e-195 686.0 341 100.0
CSS0049632 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 2.2e-167 592.4 354 86.4
CSS0006550 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 5.4e-166 587.8 356 86.2
CSS0019709 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 5.4e-166 587.8 354 85.9
CSS0009428 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.3e-156 556.6 340 85.0
CSS0029746 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 4.9e-151 538.1 354 81.4
Dinv42816 Davidia involucrata HOM05D006038 ORTHO05D007547 9.8e-144 513.8 354 73.7
Dinv43284 Davidia involucrata HOM05D006038 ORTHO05D007547 9.8e-144 513.8 354 73.7
MD10G1281400 Malus domestica HOM05D006038 ORTHO05D007547 8.6e-124 447.6 349 67.3
CANSAT11G1787 Cannabis sativa HOM05D006038 ORTHO05D007547 1.1e-123 447.2 357 61.9
TAR625G0922 Trochodendron aralioides HOM05D006038 ORTHO05D007547 1.9e-123 446.4 350 65.1
Prupe.1G102000 Prunus persica HOM05D006038 ORTHO05D007547 4.3e-123 445.3 357 65.5
Actinidia38659 Actinidia chinensis HOM05D006038 ORTHO05D007547 8.1e-122 441.0 357 65.3
Thecc.09G154200 Theobroma cacao HOM05D006038 ORTHO05D007547 1.2e-120 437.2 362 63.3
GSVIVG01023690001 Vitis vinifera HOM05D006038 ORTHO05D007547 1.2e-120 437.2 348 65.2
QL02p094222 Quercus lobata HOM05D006038 ORTHO05D007547 4.4e-120 435.3 364 62.6
PGR114G0005 Punica granatum HOM05D006038 ORTHO05D007547 3.0e-116 422.5 359 61.3
PGR142G2424 Punica granatum HOM05D006038 ORTHO05D007547 3.0e-116 422.5 359 61.3
Nn8g40105 Nelumbo nucifera HOM05D006038 ORTHO05D007547 3.9e-116 422.2 347 62.8
Lj4g0023904 Lotus japonicus HOM05D006038 ORTHO05D007547 5.1e-116 421.8 356 62.4
Cfa020781 Carpinus fangiana HOM05D006038 ORTHO05D007547 6.6e-116 421.4 359 62.7
CiPaw.15G164200 Carya illinoinensis HOM05D006038 ORTHO05D007547 8.7e-116 421.0 358 63.4
Lalb_Chr13g0300671 Lupinus albus HOM05D006038 ORTHO05D007547 1.3e-114 417.2 348 62.1
Ca_21155_v3 Cicer arietinum L. HOM05D006038 ORTHO05D007547 2.8e-114 416.0 354 62.4
Glyma.02G206900 Glycine max HOM05D006038 ORTHO05D007547 2.8e-114 416.0 344 62.2
Rhsim03G0259500 Rhododendron simsii HOM05D006038 ORTHO05D007547 2.8e-114 416.0 351 63.2
TWI63G0196 Tripterygium wilfordii HOM05D006038 ORTHO05D007547 2.8e-114 416.0 361 60.1
Sed0013580 Sechium edule HOM05D006038 ORTHO05D007547 1.1e-113 414.1 356 58.7
PGSC0003DMG400011212 Solanum tuberosum HOM05D006038 ORTHO05D007547 1.1e-113 414.1 357 61.1
Sopen07g002150 Solanum pennellii HOM05D006038 ORTHO05D007547 4.0e-113 412.1 357 61.1
Aqoxy7G02400 Aquilegia oxysepala HOM05D006038 ORTHO05D007547 9.0e-113 411.0 345 60.3
FAN17G0258 Fragaria x ananassa HOM05D006038 ORTHO05D007547 9.0e-113 411.0 349 61.6
FAN22G1283 Fragaria x ananassa HOM05D006038 ORTHO05D007547 1.2e-112 410.6 349 61.3
CsaV3_2G007740 Cucumis sativus L. HOM05D006038 ORTHO05D007547 1.5e-112 410.2 354 59.0
DCAR_020091 Daucus carota HOM05D006038 ORTHO05D007547 2.0e-112 409.8 356 61.0
Psat4g010160 Pisum sativum HOM05D006038 ORTHO05D007547 2.0e-112 409.8 356 60.7
RcHm_v2.0_Chr4g0405491 Rosa chinensis HOM05D006038 ORTHO05D007547 2.0e-112 409.8 349 62.2
Glyma.17G071100 Glycine max HOM05D006038 ORTHO05D007547 3.4e-112 409.1 344 62.2
Haze_19138 Corylus avellana HOM05D006038 ORTHO05D007547 4.4e-112 408.7 385 57.9
MELO3C004111.2 Cucumis melo HOM05D006038 ORTHO05D007547 4.4e-112 408.7 356 58.7
TPR.G22112 Trifolium pratense HOM05D006038 ORTHO05D007547 4.4e-112 408.7 356 60.4
Gohir.A05G007900 Gossypium hirsutum HOM05D006038 ORTHO05D007547 1.3e-111 407.1 362 59.4
FvH4_4g09770 Fragaria vesca HOM05D006038 ORTHO05D007547 1.7e-111 406.8 349 61.3
Solyc07g006010.3 Solanum lycopersicum HOM05D006038 ORTHO05D007547 1.7e-111 406.8 357 60.5
Gohir.D05G008700 Gossypium hirsutum HOM05D006038 ORTHO05D007547 2.9e-111 406.0 362 59.4
Gorai.009G008900 Gossypium raimondii HOM05D006038 ORTHO05D007547 2.9e-111 406.0 362 59.4
Hund08960 Selenicereus undatus HOM05D006038 ORTHO05D007547 6.4e-111 404.8 348 62.4
Cc06_g14480 Coffea canephora HOM05D006038 ORTHO05D007547 2.4e-110 402.9 351 61.0
Manes.14G113700 Manihot esculenta HOM05D006038 ORTHO05D007547 2.4e-110 402.9 356 57.0
Nitab4.5_0002809g0020 Nicotiana tabacum HOM05D006038 ORTHO05D007547 4.2e-110 402.1 372 58.1
VMungo1215G1375 Vigna mungo HOM05D006038 ORTHO05D007547 4.2e-110 402.1 345 61.2
EL10Ac8g18905 Beta vulgaris HOM05D006038 ORTHO05D007547 5.4e-110 401.7 350 61.4
FAN07G2585 Fragaria x ananassa HOM05D006038 ORTHO05D007547 3.5e-109 399.1 349 60.5
Phvul.003G153400 Phaseolus vulgaris HOM05D006038 ORTHO05D007547 1.7e-108 396.7 345 60.6
Peaxi162Scf00563g00418 Petunia axillaris HOM05D006038 ORTHO05D007547 3.9e-108 395.6 353 57.8
Medtr4g130280 Medicago truncatula HOM05D006038 ORTHO05D007547 5.1e-108 395.2 356 59.6
PSO170G4900 Papaver somniferum HOM05D006038 ORTHO05D007547 8.7e-108 394.4 348 59.8
ECA236G4218 Erigeron canadensis HOM05D006038 ORTHO05D007547 1.5e-107 393.7 351 61.0
CAN.G1190.21 Capsicum annuum HOM05D006038 ORTHO05D007547 4.8e-106 388.7 348 59.5
Lsat_1_v5_gn_8_64821 Lactuca sativa HOM05D006038 ORTHO05D007547 4.8e-106 388.7 338 61.2
Cpa.g.sc199.14 Carica papaya HOM05D006038 ORTHO05D007547 1.4e-105 387.1 359 57.1
PSO017G0013 Papaver somniferum HOM05D006038 ORTHO05D007547 1.4e-105 387.1 348 58.9
ClCG02G014260 Citrullus lanatus HOM05D006038 ORTHO05D007547 4.0e-105 385.6 372 54.3
THA.LOC104803556 Tarenaya hassleriana HOM05D006038 ORTHO05D007547 8.4e-103 377.9 354 55.1
Ciclev10008825m.g Citrus clementina HOM05D006038 ORTHO05D007547 1.1e-102 377.5 348 58.3
Atru.chr7.352 Acer truncatum HOM05D006038 ORTHO05D007547 7.1e-102 374.8 364 55.5
Potri.006G180300 Populus trichocarpa HOM05D006038 ORTHO05D007547 1.6e-101 373.6 364 54.4
Sabra06G0137300 Salix brachista HOM05D006038 ORTHO05D007547 1.8e-100 370.2 364 53.3
MBI15_g26068_MAGBIO Magnolia biondii HOM05D006038 ORTHO05D007547 8.7e-100 367.9 329 59.6
Sp7g28720 Schrenkiella parvula HOM05D006038 ORTHO05D007547 8.7e-100 367.9 357 55.5
Nitab4.5_0001036g0170 Nicotiana tabacum HOM05D006038 ORTHO05D007547 1.5e-99 367.1 361 56.2
Migut.J01393 Erythranthe guttata HOM05D006038 ORTHO05D007547 1.9e-99 366.7 357 55.5
BraA03t15077Z Brassica rapa HOM05D006038 ORTHO05D007547 9.6e-99 364.4 352 56.0
CDE04G0171 Ceratophyllum demersum HOM05D006038 ORTHO05D007547 1.6e-98 363.6 346 55.2
AL7G21280 Arabidopsis lyrata HOM05D006038 ORTHO05D007547 2.1e-98 363.2 358 54.7
MSTRG.6162 Avicennia marina HOM05D006038 ORTHO05D007547 2.8e-98 362.8 354 54.5
BcaNung02736 Brassica carinata HOM05D006038 ORTHO05D007547 2.8e-98 362.8 352 56.0
AT4G30840 Arabidopsis thaliana HOM05D006038 ORTHO05D007547 4.8e-98 362.1 358 54.2
HanXRQChr06g0179781 Helianthus annuus HOM05D006038 ORTHO05D007547 1.1e-97 360.9 350 55.1
CARHR238700 Cardamine hirsuta HOM05D006038 ORTHO05D007547 1.5e-96 357.1 358 54.2
SGA_v2.0_scaffold265G46074 Striga asiatica HOM05D006038 ORTHO05D007547 1.5e-96 357.1 366 54.9
Ah.14g084370 Amaranthus hybridus HOM05D001135 ORTHO05D001005 2.0e-96 356.7 331 58.6
Carub.0007s0972 Capsella rubella HOM05D006038 ORTHO05D007547 7.6e-96 354.8 359 54.0
Aa31LG2G19530 Aethionema arabicum HOM05D006038 ORTHO05D007547 1.4e-94 350.5 357 52.7
vmacro06051 Vaccinium macrocarpon HOM05D006038 ORTHO05D007547 3.2e-94 349.4 368 55.2
HPP92_020613 Vanilla planifolia HOM05D006038 ORTHO05D007547 1.6e-93 347.1 356 55.1
ATR0580G061 Amborella trichopoda HOM05D006038 ORTHO05D007547 6.0e-93 345.1 350 52.6
Sc14g0000990 Simmondsia chinensis HOM05D006038 ORTHO05D007547 3.9e-92 342.4 357 54.6
A03p60370 Brassica napus HOM05D006038 ORTHO05D007547 1.6e-90 337.0 335 55.2
C07p58240 Brassica napus HOM05D006038 ORTHO05D007547 3.7e-90 335.9 335 54.9
BcaNung01557 Brassica carinata HOM05D006038 ORTHO05D007547 6.3e-90 335.1 333 57.1
BolC7t46282H Brassica oleracea HOM05D006038 ORTHO05D007547 6.3e-90 335.1 335 54.9
AUR62028377 Chenopodium quinoa HOM05D006038 ORTHO05D007547 2.2e-87 326.6 258 64.3
AUR62025374 Chenopodium quinoa HOM05D006038 ORTHO05D007547 2.9e-87 326.2 235 69.8
Eucgr.K03188 Eucalyptus grandis HOM05D006038 ORTHO05D007547 1.9e-86 323.6 337 52.8
CSS0013086 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 3.7e-82 309.3 208 80.3
CSS0027410 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 4.1e-81 305.8 208 79.3
CSS0009266 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.0e-76 291.2 211 75.8
Dinv41342 Davidia involucrata HOM05D006038 ORTHO05D007547 1.0e-76 291.2 235 64.7
Os08g0266600 Oryza sativa ssp. japonica HOM05D006038 ORTHO05D007547 5.9e-72 275.4 342 47.1
Zm00001eb177980 Zea mays HOM05D006038 ORTHO05D007547 2.5e-70 270.0 339 46.3
Oeu027617.1 Olea europaea HOM05D006038 ORTHO05D007547 1.0e-68 264.6 163 74.2
SMO367G0193 Selaginella moellendorffii HOM05D006038 ORTHO05D007547 1.3e-66 257.7 349 39.8
Thhalv10025548m.g Eutrema salsugineum HOM05D006038 ORTHO05D007547 3.7e-66 256.1 311 46.6
arahy.Tifrunner.gnm1.ann1.3R6I6F Arachis hypogaea HOM05D006038 ORTHO05D007547 8.2e-66 255.0 225 61.8
AagrBONN_evm.TU.Sc2ySwM_117.2538 Anthoceros agrestis HOM05D006038 ORTHO05D007547 1.5e-62 244.2 370 38.6
CSS0022095 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 5.0e-55 219.2 120 90.8
Lj7A464T42 Lonicera japonica HOM05D006038 ORTHO05D007547 8.5e-55 218.4 208 58.7
COL.COLO4_05400 Corchorus olitorius HOM05D006038 ORTHO05D007547 6.1e-53 212.2 216 52.3
Lj7A464G38 Lonicera japonica HOM05D006038 ORTHO05D007547 3.7e-50 203.0 143 73.4
Cfa020780 Carpinus fangiana HOM05D006038 ORTHO05D007547 8.3e-50 201.8 216 54.2
SHI18668 Sapria himalayana HOM05D006038 ORTHO05D007547 2.4e-49 200.3 297 39.7
A01p07320 Brassica napus HOM05D006038 ORTHO05D007547 6.5e-47 192.2 228 49.6
CSS0024276 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.8e-44 184.1 201 55.7
SEGI_08614 Sequoiadendron giganteum HOM05D006038 ORTHO05D007547 9.2e-41 171.8 145 56.6
CBR_g22430 Chara braunii HOM05D006038 ORTHO05D007547 1.2e-40 171.4 257 37.7
Pp3c6_28770 Physcomitrium patens HOM05D006038 ORTHO05D007547 9.5e-30 135.2 165 41.2
CSS0031036 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 2.0e-24 117.5 66 90.9
CSS0047172 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 4.6e-24 116.3 66 92.4
CSS0034156 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 6.4e-18 95.9 66 80.3
Zm00001eb124580 Zea mays HOM05D006038 ORTHO05D007547 5.8e-11 72.8 52 63.5
BcaNung03435 Brassica carinata HOM05D001147 ORTHO05D000823 8.4e-10 68.9 117 40.2
Cre02.g090600 Chlamydomonas reinhardtii HOM05D006038 ORTHO05D007547 8.4e-10 68.9 165 28.5
Zm00001eb369920 Zea mays HOM05D006038 ORTHO05D007547 8.4e-10 68.9 57 57.9
Zm00001eb038770 Zea mays HOM05D006038 ORTHO05D007547 1.9e-09 67.8 53 62.3
Zm00001eb046820 Zea mays HOM05D006038 ORTHO05D007547 1.9e-09 67.8 53 62.3
Zm00001eb051760 Zea mays HOM05D006038 ORTHO05D007547 1.9e-09 67.8 53 62.3
Zm00001eb253640 Zea mays HOM05D006038 ORTHO05D007547 4.1e-09 66.6 56 58.9
Zm00001eb021100 Zea mays HOM05D002913 ORTHO05D026003 6.6e-07 59.3 49 59.2
Zm00001eb156390 Zea mays HOM05D009386 ORTHO05D011419 6.6e-07 59.3 49 59.2
Zm00001eb343430 Zea mays HOM05D002913 ORTHO05D020952 6.6e-07 59.3 49 59.2
Zm00001eb354900 Zea mays HOM05D002913 ORTHO05D026003 6.6e-07 59.3 49 59.2


User provided reference genes

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