Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047755 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 9.8e-101 370.2 190 100.0
CSS0031477 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 2.0e-98 362.5 190 97.9
Actinidia06383 Actinidia chinensis HOM05D004068 ORTHO05D004700 2.1e-50 203.0 141 70.9
Actinidia21362 Actinidia chinensis HOM05D004068 ORTHO05D004700 3.6e-47 192.2 145 67.6
Rhsim13G0001400 Rhododendron simsii HOM05D004068 ORTHO05D004700 3.6e-47 192.2 180 57.8
Hma1.2p1_0484F.1_g162840 Hydrangea macrophylla HOM05D004068 ORTHO05D004700 1.4e-46 190.3 182 55.5
GSVIVG01028194001 Vitis vinifera HOM05D004068 ORTHO05D004700 3.4e-45 185.7 179 55.9
Manes.05G011200 Manihot esculenta HOM05D004068 ORTHO05D004700 2.2e-44 183.0 147 61.2
CSS0008406 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 3.8e-44 182.2 124 71.0
HanXRQChr16g0512461 Helianthus annuus HOM05D004068 ORTHO05D004700 3.8e-44 182.2 144 61.1
Prupe.3G006200 Prunus persica HOM05D004068 ORTHO05D004700 4.9e-44 181.8 91 87.9
Gohir.A11G106800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 6.4e-44 181.4 139 65.5
COL.COLO4_23168 Corchorus olitorius HOM05D004068 ORTHO05D004700 1.1e-43 180.6 105 78.1
Ciclev10022090m.g Citrus clementina HOM05D004068 ORTHO05D004700 1.9e-43 179.9 113 75.2
Cc01_g21940 Coffea canephora HOM05D004068 ORTHO05D004700 1.9e-43 179.9 112 75.0
MSTRG.18070 Avicennia marina HOM05D004068 ORTHO05D004700 2.4e-43 179.5 117 70.9
PSO357G0073 Papaver somniferum HOM05D004068 ORTHO05D004700 2.4e-43 179.5 138 64.5
PSO170G5617 Papaver somniferum HOM05D004068 ORTHO05D004700 4.2e-43 178.7 138 63.8
Glyma.10G009700 Glycine max HOM05D004068 ORTHO05D004700 5.5e-43 178.3 115 73.0
MD09G1287000 Malus domestica HOM05D004068 ORTHO05D004700 5.5e-43 178.3 93 83.9
SalBow6G1478 Salvia bowleyana HOM05D004068 ORTHO05D004700 5.5e-43 178.3 120 73.3
Duzib138G0863 Durio zibethinus HOM05D004068 ORTHO05D004700 7.1e-43 177.9 105 76.2
Sc17g0000200 Simmondsia chinensis HOM05D004068 ORTHO05D004700 7.1e-43 177.9 107 74.8
MD17G1279300 Malus domestica HOM05D004068 ORTHO05D004700 9.3e-43 177.6 93 83.9
Peaxi162Scf00919g00026 Petunia axillaris HOM05D004068 ORTHO05D004700 1.2e-42 177.2 151 58.3
Gorai.007G119900 Gossypium raimondii HOM05D004068 ORTHO05D004700 1.6e-42 176.8 140 62.9
ECA236G4612 Erigeron canadensis HOM05D004068 ORTHO05D004700 2.1e-42 176.4 117 67.5
Eucgr.H00894 Eucalyptus grandis HOM05D004068 ORTHO05D004700 2.1e-42 176.4 135 62.2
Nn3g21863 Nelumbo nucifera HOM05D004068 ORTHO05D004700 2.1e-42 176.4 110 71.8
Nitab4.5_0004218g0050 Nicotiana tabacum HOM05D004068 ORTHO05D004700 2.1e-42 176.4 140 61.4
PGR083G2849 Punica granatum HOM05D004068 ORTHO05D004700 2.1e-42 176.4 102 78.4
CiPaw.08G084800 Carya illinoinensis HOM05D004068 ORTHO05D004700 2.7e-42 176.0 148 60.1
QL12p034273 Quercus lobata HOM05D004068 ORTHO05D004700 2.7e-42 176.0 141 61.7
Cfa004871 Carpinus fangiana HOM05D004068 ORTHO05D004700 3.5e-42 175.6 136 64.7
Duzib211G0484 Durio zibethinus HOM05D004068 ORTHO05D004700 4.6e-42 175.3 104 76.9
Haze_05111 Corylus avellana HOM05D004068 ORTHO05D004700 6.0e-42 174.9 180 54.4
DCAR_018255 Daucus carota HOM05D004068 ORTHO05D004700 6.0e-42 174.9 148 60.1
Migut.D00035 Erythranthe guttata HOM05D004068 ORTHO05D004700 6.0e-42 174.9 125 66.4
Glyma.02G009000 Glycine max HOM05D004068 ORTHO05D004700 6.0e-42 174.9 113 73.5
CANSAT54G1466 Cannabis sativa HOM05D004068 ORTHO05D004700 1.0e-41 174.1 91 82.4
Lalb_Chr06g0167051 Lupinus albus HOM05D004068 ORTHO05D004700 1.0e-41 174.1 91 82.4
MBI19_g32706_MAGBIO Magnolia biondii HOM05D004068 ORTHO05D004700 1.0e-41 174.1 111 71.2
Thecc.01G321500 Theobroma cacao HOM05D004068 ORTHO05D004700 1.3e-41 173.7 148 60.8
Gohir.D11G111800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.8e-41 173.3 90 82.2
FvH4_1g26710 Fragaria vesca HOM05D004068 ORTHO05D004700 2.3e-41 172.9 103 74.8
RcHm_v2.0_Chr3g0486891 Rosa chinensis HOM05D004068 ORTHO05D004700 2.3e-41 172.9 103 75.7
TWI14G0788 Tripterygium wilfordii HOM05D004068 ORTHO05D004700 2.3e-41 172.9 122 68.0
CAN.G100.22 Capsicum annuum HOM05D004068 ORTHO05D004700 3.0e-41 172.6 91 81.3
SGA_v2.0_scaffold417G51268 Striga asiatica HOM05D004068 ORTHO05D004700 3.0e-41 172.6 113 68.1
Cpa.g.sc67.88 Carica papaya HOM05D004068 ORTHO05D004700 3.9e-41 172.2 139 61.9
FAN23G3049 Fragaria x ananassa HOM05D004068 ORTHO05D004700 6.7e-41 171.4 103 73.8
FAN28G2449 Fragaria x ananassa HOM05D004068 ORTHO05D004700 6.7e-41 171.4 103 73.8
Nitab4.5_0000222g0260 Nicotiana tabacum HOM05D004068 ORTHO05D004700 8.7e-41 171.0 146 58.2
Atru.chr5.916 Acer truncatum HOM05D004068 ORTHO05D004700 1.9e-40 169.9 91 80.2
FAN26G1054 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.9e-40 169.9 103 72.8
unitig_90.g27445 Utricularia gibba HOM05D004068 ORTHO05D004700 1.9e-40 169.9 90 82.2
Gohir.A07G130200 Gossypium hirsutum HOM05D004068 ORTHO05D004700 2.5e-40 169.5 105 73.3
EL10As5g23587 Beta vulgaris HOM05D004068 ORTHO05D004700 3.3e-40 169.1 112 67.9
Sopen01g029940 Solanum pennellii HOM05D004068 ORTHO05D004700 3.3e-40 169.1 149 57.0
Solyc01g068020.4 Solanum lycopersicum HOM05D004068 ORTHO05D004700 4.3e-40 168.7 149 57.0
Gorai.001G146300 Gossypium raimondii HOM05D004068 ORTHO05D004700 5.6e-40 168.3 105 72.4
PGSC0003DMG400005200 Solanum tuberosum HOM05D004068 ORTHO05D004700 1.3e-39 167.2 146 58.9
TAR633G0425 Trochodendron aralioides HOM05D004068 ORTHO05D004700 1.3e-39 167.2 102 72.5
Gohir.D07G134600 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.6e-39 166.8 105 71.4
Sopen01g029950 Solanum pennellii HOM05D004068 ORTHO05D004700 1.6e-39 166.8 146 58.9
FAN19G0978 Fragaria x ananassa HOM05D004068 ORTHO05D004700 2.1e-39 166.4 103 74.8
Solyc01g068030.3 Solanum lycopersicum HOM05D004068 ORTHO05D004700 2.1e-39 166.4 146 58.9
CiPaw.07G122600 Carya illinoinensis HOM05D004068 ORTHO05D004700 3.7e-39 165.6 109 67.0
Potri.002G190300 Populus trichocarpa HOM05D004068 ORTHO05D004700 3.7e-39 165.6 124 61.3
MELO3C023625.2 Cucumis melo HOM05D004068 ORTHO05D004700 4.8e-39 165.2 91 75.8
CsaV3_7G030310 Cucumis sativus L. HOM05D004068 ORTHO05D004700 6.2e-39 164.9 106 68.9
TAR636G1362 Trochodendron aralioides HOM05D004068 ORTHO05D004700 6.2e-39 164.9 194 51.5
PGR083G1259 Punica granatum HOM05D004068 ORTHO05D004700 1.8e-38 163.3 102 72.5
Medtr1g086340 Medicago truncatula HOM05D004068 ORTHO05D004700 4.0e-38 162.2 94 76.6
Aa31LG1G10110 Aethionema arabicum HOM05D004068 ORTHO05D004700 5.3e-38 161.8 90 74.4
AL1G11820 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 9.0e-38 161.0 90 74.4
CARHR001800 Cardamine hirsuta HOM05D004068 ORTHO05D004700 9.0e-38 161.0 90 74.4
HanXRQChr06g0168031 Helianthus annuus HOM05D004068 ORTHO05D004700 1.2e-37 160.6 90 73.3
Aqoxy2G02578 Aquilegia oxysepala HOM05D004068 ORTHO05D004700 1.5e-37 160.2 86 81.4
A10p01270 Brassica napus HOM05D004068 ORTHO05D004700 1.5e-37 160.2 90 73.3
C05p01270 Brassica napus HOM05D004068 ORTHO05D004700 1.5e-37 160.2 90 73.3
Thhalv10008722m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.5e-37 160.2 90 74.4
Lsat_1_v5_gn_8_167400 Lactuca sativa HOM05D004068 ORTHO05D004700 1.5e-37 160.2 84 84.5
AT1G02475 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 2.0e-37 159.8 90 73.3
AUR62011741 Chenopodium quinoa HOM05D004068 ORTHO05D004700 2.0e-37 159.8 96 74.0
AUR62024574 Chenopodium quinoa HOM05D004068 ORTHO05D004700 2.6e-37 159.5 95 72.6
Potri.014G115400 Populus trichocarpa HOM05D004068 ORTHO05D004700 2.6e-37 159.5 100 70.0
Sp1g01550 Schrenkiella parvula HOM05D004068 ORTHO05D004700 2.6e-37 159.5 90 73.3
Sed0027961 Sechium edule HOM05D004068 ORTHO05D004700 2.6e-37 159.5 91 73.6
BcaB03g15774 Brassica carinata HOM05D004068 ORTHO05D004700 4.5e-37 158.7 90 72.2
Zm00001eb131060 Zea mays HOM05D004068 ORTHO05D004700 1.0e-36 157.5 98 68.4
Carub.0001s0155 Capsella rubella HOM05D004068 ORTHO05D004700 1.7e-36 156.8 90 72.2
Sed0019105 Sechium edule HOM05D004068 ORTHO05D004700 1.7e-36 156.8 91 71.4
HPP92_010032 Vanilla planifolia HOM05D004068 ORTHO05D004700 1.7e-36 156.8 143 53.1
Thhalv10028926m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 2.2e-36 156.4 91 72.5
Thhalv10028927m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 2.2e-36 156.4 91 72.5
THA.LOC104801318 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 2.2e-36 156.4 97 72.2
Carub.0006s3535 Capsella rubella HOM05D004068 ORTHO05D004700 2.9e-36 156.0 91 71.4
CARHR249850 Cardamine hirsuta HOM05D004068 ORTHO05D004700 2.9e-36 156.0 118 60.2
ATR0693G403 Amborella trichopoda HOM05D004068 ORTHO05D004700 3.8e-36 155.6 93 68.8
AT4G01883 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 3.8e-36 155.6 91 70.3
BcaC04g24068 Brassica carinata HOM05D004068 ORTHO05D004700 1.4e-35 153.7 160 51.2
BcaB01g02105 Brassica carinata HOM05D004068 ORTHO05D004700 2.5e-35 152.9 91 71.4
Sp6g01730 Schrenkiella parvula HOM05D004068 ORTHO05D004700 2.5e-35 152.9 91 71.4
Sabra14G0085500 Salix brachista HOM05D004068 ORTHO05D004700 9.3e-35 151.0 121 58.7
AL6G51410 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 1.6e-34 150.2 94 68.1
THA.LOC104801319 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 3.5e-34 149.1 138 54.3
CAN.G100.23 Capsicum annuum HOM05D004068 ORTHO05D004700 4.6e-34 148.7 81 77.8
Hund09678 Selenicereus undatus HOM05D004068 ORTHO05D004700 1.0e-33 147.5 82 78.0
C09p01400 Brassica napus HOM05D004068 ORTHO05D004700 1.8e-33 146.7 162 49.4
Sabra02G0165200 Salix brachista HOM05D004068 ORTHO05D004700 6.7e-33 144.8 121 56.2
BolC9t53073H Brassica oleracea HOM05D004068 ORTHO05D004700 8.7e-33 144.4 168 47.6
CDE02G2955 Ceratophyllum demersum HOM05D000037 ORTHO05D001684 9.6e-32 141.0 79 77.2
BolC5t28909H Brassica oleracea HOM05D004068 ORTHO05D004700 2.1e-31 139.8 92 66.3
BraA10t42405Z Brassica rapa HOM05D004068 ORTHO05D004700 3.7e-31 139.0 91 65.9
Phvul.007G211200 Phaseolus vulgaris HOM05D004068 ORTHO05D004700 3.7e-31 139.0 119 60.5
Lj5g0018153 Lotus japonicus HOM05D004068 ORTHO05D004700 1.2e-29 134.0 91 70.3
Psat6g159440 Pisum sativum HOM05D004068 ORTHO05D004700 1.2e-29 134.0 73 79.5
VMungo0720G2238 Vigna mungo HOM05D004068 ORTHO05D004700 3.4e-29 132.5 88 69.3
Dinv12104 Davidia involucrata HOM05D004068 ORTHO05D004700 4.5e-29 132.1 65 92.3
SEGI_19128 Sequoiadendron giganteum HOM05D004068 ORTHO05D004700 5.9e-29 131.7 90 57.8
Lj1A11T70 Lonicera japonica HOM05D004068 ORTHO05D004700 3.8e-28 129.0 165 46.7
arahy.Tifrunner.gnm1.ann1.20WW32 Arachis hypogaea HOM05D004068 ORTHO05D004700 1.4e-27 127.1 69 79.7
arahy.Tifrunner.gnm1.ann1.G5UTBZ Arachis hypogaea HOM05D004068 ORTHO05D004700 1.4e-27 127.1 69 79.7
BcaC07g42396 Brassica carinata HOM05D004068 ORTHO05D004700 1.4e-27 127.1 83 66.3
Carub.0001s0154 Capsella rubella HOM05D004068 ORTHO05D004700 9.3e-27 124.4 96 53.1
Ca_10252_v3 Cicer arietinum L. HOM05D004068 ORTHO05D004700 9.3e-27 124.4 147 43.5
vmacro09333 Vaccinium macrocarpon HOM05D004068 ORTHO05D004700 9.3e-27 124.4 65 87.7
AT1G02470 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 1.2e-26 124.0 96 55.2
THA.LOC104801317 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 2.7e-26 122.9 96 57.3
AL1G11810 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 3.5e-26 122.5 96 55.2
CARHR001790 Cardamine hirsuta HOM05D004068 ORTHO05D004700 3.5e-26 122.5 147 41.5
Thhalv10008621m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 3.5e-26 122.5 90 54.4
Ah.02g112620 Amaranthus hybridus HOM05D004068 ORTHO05D004700 1.0e-25 120.9 63 81.0
AagrBONN_evm.TU.Sc2ySwM_228.3301 Anthoceros agrestis HOM05D004068 ORTHO05D004700 1.8e-25 120.2 88 55.7
A09p68650 Brassica napus HOM05D004068 ORTHO05D004700 1.8e-25 120.2 88 54.5
BraA09t42208Z Brassica rapa HOM05D004068 ORTHO05D004700 1.8e-25 120.2 88 54.5
SMO134G0067 Selaginella moellendorffii HOM05D004068 ORTHO05D004700 2.3e-25 119.8 82 61.0
BcaC07g42395 Brassica carinata HOM05D004068 ORTHO05D004700 3.0e-25 119.4 88 54.5
C08p53250 Brassica napus HOM05D004068 ORTHO05D004700 3.0e-25 119.4 88 54.5
BolC8t52840H Brassica oleracea HOM05D004068 ORTHO05D004700 3.0e-25 119.4 88 54.5
Sp1g01540 Schrenkiella parvula HOM05D004068 ORTHO05D004700 3.9e-25 119.0 90 51.1
BraA09t35801Z Brassica rapa HOM05D004068 ORTHO05D004700 5.1e-25 118.6 140 46.4
Mapoly0066s0015 Marchantia polymorpha HOM05D004068 ORTHO05D004700 6.7e-25 118.2 88 54.5
TPR.G3089 Trifolium pratense HOM05D004068 ORTHO05D004700 6.7e-25 118.2 68 73.5
A10p01260 Brassica napus HOM05D004068 ORTHO05D004700 1.1e-24 117.5 90 51.1
C05p01260 Brassica napus HOM05D004068 ORTHO05D004700 1.1e-24 117.5 90 51.1
BraA10t42404Z Brassica rapa HOM05D004068 ORTHO05D004700 1.1e-24 117.5 90 51.1
Aa31LG1G10100 Aethionema arabicum HOM05D004068 ORTHO05D004700 5.7e-24 115.2 96 51.0
Pp3c9_13510 Physcomitrium patens HOM05D004068 ORTHO05D004700 4.8e-23 112.1 88 50.0
Pp3c26_7940 Physcomitrium patens HOM05D004068 ORTHO05D004700 8.2e-23 111.3 88 48.9
CBR_g29411 Chara braunii HOM05D004068 ORTHO05D004700 4.5e-21 105.5 88 48.9
CAN.G257.121 Capsicum annuum HOM05D004068 ORTHO05D004700 6.5e-20 101.7 108 49.1
HPP92_015252 Vanilla planifolia HOM05D004068 ORTHO05D004700 6.5e-20 101.7 52 78.8
Cre14.g616250 Chlamydomonas reinhardtii HOM05D004068 ORTHO05D004700 3.6e-18 95.9 87 44.8
MCO03G258 Micromonas commoda HOM05D004068 ORTHO05D004700 2.8e-15 86.3 88 39.8
Glyma.19G225300 Glycine max HOM05D004068 ORTHO05D004700 1.1e-14 84.3 85 52.9
Aa31LG5G1470 Aethionema arabicum HOM05D004068 ORTHO05D004700 3.1e-14 82.8 106 42.5
ClCG09G004770 Citrullus lanatus HOM05D004068 ORTHO05D004700 1.5e-13 80.5 91 44.0
Oeu052569.2 Olea europaea HOM05D004068 ORTHO05D004700 2.6e-13 79.7 101 44.6
Oeu044746.1 Olea europaea HOM05D004068 ORTHO05D004700 4.5e-13 79.0 94 44.7
PRCOL_00002997 Prasinoderma coloniale HOM05D004068 ORTHO05D004700 1.0e-12 77.8 98 35.7
BcaC03g18203 Brassica carinata HOM05D004068 ORTHO05D004700 9.4e-11 71.2 114 40.4
C02p62690 Brassica napus HOM05D004068 ORTHO05D004700 2.7e-10 69.7 102 40.2
A02p42700 Brassica napus HOM05D004068 ORTHO05D004700 4.7e-10 68.9 110 38.2
Os01g0328600 Oryza sativa ssp. japonica HOM05D004068 ORTHO05D004700 4.7e-10 68.9 49 53.1
A09p01340 Brassica napus HOM05D004068 ORTHO05D004700 3.9e-09 65.9 117 35.9


User provided reference genes

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