Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047752 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D007115 5.9e-214 747.3 382 100.0
Dinv11454 Davidia involucrata HOM05D002505 ORTHO05D007115 2.1e-166 589.3 409 75.1
GSVIVG01019628001 Vitis vinifera HOM05D002505 ORTHO05D007115 2.5e-164 582.4 411 72.5
Haze_09143 Corylus avellana HOM05D002505 ORTHO05D007115 2.1e-163 579.3 412 72.1
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 4.8e-163 578.2 380 77.9
Cfa011943 Carpinus fangiana HOM05D002505 ORTHO05D007115 3.1e-162 575.5 412 71.8
Lj2A158G82 Lonicera japonica HOM05D002505 ORTHO05D007115 9.0e-162 573.9 440 68.0
QL02p027659 Quercus lobata HOM05D002505 ORTHO05D007115 9.0e-162 573.9 411 71.3
TAR375G0040 Trochodendron aralioides HOM05D002505 ORTHO05D007115 8.4e-160 567.4 413 70.0
vmacro11517 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 2.4e-159 565.8 479 63.0
Nitab4.5_0002728g0050 Nicotiana tabacum HOM05D002505 ORTHO05D007115 1.7e-157 559.7 411 71.3
Thecc.03G223700 Theobroma cacao HOM05D002505 ORTHO05D007115 8.7e-157 557.4 411 70.3
TWI60G0007 Tripterygium wilfordii HOM05D002505 ORTHO05D007115 1.9e-156 556.2 419 67.8
CiPaw.11G114300 Carya illinoinensis HOM05D002505 ORTHO05D007115 2.5e-156 555.8 409 69.7
Duzib205G1766 Durio zibethinus HOM05D002505 ORTHO05D007115 7.3e-156 554.3 410 68.5
TPR.G36929 Trifolium pratense HOM05D002505 ORTHO05D007115 1.3e-155 553.5 412 69.2
RcHm_v2.0_Chr7g0186571 Rosa chinensis HOM05D002505 ORTHO05D007115 6.2e-155 551.2 413 68.3
Sopen08g031180 Solanum pennellii HOM05D002505 ORTHO05D007115 1.1e-154 550.4 411 69.6
HanXRQChr02g0047181 Helianthus annuus HOM05D002505 ORTHO05D007115 1.4e-154 550.1 407 68.1
Solyc08g082960.3 Solanum lycopersicum HOM05D002505 ORTHO05D007115 3.1e-154 548.9 411 69.3
Ca_12555_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 5.3e-154 548.1 410 68.8
Prupe.5G127300 Prunus persica HOM05D002505 ORTHO05D007115 6.9e-154 547.7 413 68.3
FAN07G1120 Fragaria x ananassa HOM05D002505 ORTHO05D007115 9.0e-154 547.4 414 69.1
FAN17G1638 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.5e-153 546.6 414 69.1
FvH4_4g16080 Fragaria vesca HOM05D002505 ORTHO05D007115 2.6e-153 545.8 414 68.6
FAN12G2820 Fragaria x ananassa HOM05D002505 ORTHO05D007115 2.6e-153 545.8 414 68.6
Psat6g045400 Pisum sativum HOM05D002505 ORTHO05D007115 2.6e-153 545.8 410 69.0
CANSAT21G2418 Cannabis sativa HOM05D002505 ORTHO05D007115 3.4e-153 545.4 410 68.5
Nitab4.5_0005042g0030 Nicotiana tabacum HOM05D002505 ORTHO05D007115 1.3e-152 543.5 392 70.9
Gohir.A12G238900 Gossypium hirsutum HOM05D002505 ORTHO05D007115 4.9e-152 541.6 404 67.6
Gohir.D12G240000 Gossypium hirsutum HOM05D002505 ORTHO05D007115 8.4e-152 540.8 404 67.8
Gorai.008G257100 Gossypium raimondii HOM05D002505 ORTHO05D007115 1.9e-151 539.7 404 67.6
FAN22G1998 Fragaria x ananassa HOM05D002505 ORTHO05D007115 3.2e-151 538.9 414 68.1
Oeu010746.1 Olea europaea HOM05D002505 ORTHO05D007115 1.2e-150 537.0 409 68.5
Actinidia22196 Actinidia chinensis HOM05D002505 ORTHO05D007115 2.1e-150 536.2 416 70.7
Manes.02G004600 Manihot esculenta HOM05D002505 ORTHO05D007115 4.6e-150 535.0 406 68.7
Lalb_Chr17g0338531 Lupinus albus HOM05D002505 ORTHO05D007115 3.9e-149 531.9 406 67.7
AUR62007033 Chenopodium quinoa HOM05D002505 ORTHO05D007115 8.7e-149 530.8 410 67.3
Potri.003G145100 Populus trichocarpa HOM05D002505 ORTHO05D007115 1.9e-148 529.6 419 66.3
AUR62019897 Chenopodium quinoa HOM05D002505 ORTHO05D007115 1.6e-147 526.6 406 66.5
Medtr1g032200 Medicago truncatula HOM05D002505 ORTHO05D007115 2.1e-147 526.2 410 67.8
Ca_12566_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 4.8e-147 525.0 383 69.2
Aqoxy5G02423 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 1.4e-146 523.5 408 65.7
arahy.Tifrunner.gnm1.ann1.31YZJ9 Arachis hypogaea HOM05D002505 ORTHO05D007115 2.4e-146 522.7 408 66.7
LjContig00141g0018407 Lotus japonicus HOM05D002505 ORTHO05D007115 2.4e-146 522.7 409 65.5
arahy.Tifrunner.gnm1.ann1.Y3P1ER Arachis hypogaea HOM05D002505 ORTHO05D007115 5.3e-146 521.5 408 66.4
Medtr5g025880 Medicago truncatula HOM05D002505 ORTHO05D007115 5.3e-146 521.5 400 68.0
MD06G1114600 Malus domestica HOM05D002505 ORTHO05D007115 2.6e-145 519.2 416 65.4
Cpa.g.sc175.6 Carica papaya HOM05D002505 ORTHO05D007115 3.4e-145 518.8 384 68.2
Peaxi162Scf00074g00358 Petunia axillaris HOM05D002505 ORTHO05D007115 5.8e-145 518.1 383 70.8
MSTRG.2011 Avicennia marina HOM05D002505 ORTHO05D007115 2.2e-144 516.2 415 64.6
VMungo1309G3079 Vigna mungo HOM05D002505 ORTHO05D007115 2.9e-144 515.8 405 66.2
Aqoxy5G01632 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 3.8e-144 515.4 408 65.2
Glyma.04G232000 Glycine max HOM05D002505 ORTHO05D007115 4.9e-144 515.0 406 66.7
Glyma.06G132900 Glycine max HOM05D002505 ORTHO05D007115 6.5e-144 514.6 406 65.8
Eucgr.D01694 Eucalyptus grandis HOM05D002505 ORTHO05D007115 4.2e-143 511.9 407 64.1
ClCG05G020760 Citrullus lanatus HOM05D002505 ORTHO05D007115 1.2e-142 510.4 413 66.6
Cc00_g23270 Coffea canephora HOM05D002505 ORTHO05D007115 1.2e-142 510.4 418 64.6
Phvul.009G039500 Phaseolus vulgaris HOM05D002505 ORTHO05D007115 1.8e-141 506.5 405 65.2
Lalb_Chr10g0095811 Lupinus albus HOM05D002505 ORTHO05D007115 1.1e-140 503.8 410 65.4
SalBow6G5481 Salvia bowleyana HOM05D002505 ORTHO05D007115 1.1e-140 503.8 410 62.9
MBI04_g06931_MAGBIO Magnolia biondii HOM05D002505 ORTHO05D007115 1.9e-140 503.1 411 64.0
CsaV3_5G036540 Cucumis sativus L. HOM05D002505 ORTHO05D007115 2.5e-140 502.7 411 65.7
Ciclev10020379m.g Citrus clementina HOM05D002505 ORTHO05D007115 4.3e-140 501.9 414 64.7
Lsat_1_v5_gn_6_9040 Lactuca sativa HOM05D002505 ORTHO05D007115 5.7e-140 501.5 405 63.5
Migut.J00879 Erythranthe guttata HOM05D002505 ORTHO05D007115 9.6e-140 500.7 413 62.2
Sed0001422 Sechium edule HOM05D002505 ORTHO05D007115 1.6e-139 500.0 418 65.1
Dinv25607 Davidia involucrata HOM05D002505 ORTHO05D007115 2.2e-136 489.6 349 73.9
DCAR_009648 Daucus carota HOM05D002505 ORTHO05D007115 3.8e-136 488.8 395 63.3
SGA_v2.0_scaffold104G30125 Striga asiatica HOM05D002505 ORTHO05D007115 1.4e-135 486.9 405 60.0
Sabra01G0062100 Salix brachista HOM05D002505 ORTHO05D007115 2.1e-134 483.0 416 63.2
PSO339G4385 Papaver somniferum HOM05D002505 ORTHO05D007115 8.2e-131 471.1 420 58.6
COL.COLO4_10772 Corchorus olitorius HOM05D002505 ORTHO05D007115 1.7e-128 463.4 351 68.9
PSO384G5034 Papaver somniferum HOM05D002505 ORTHO05D007115 1.7e-128 463.4 419 58.2
Nn4g26685 Nelumbo nucifera HOM05D002505 ORTHO05D007115 5.0e-128 461.8 341 69.8
unitig_22.g5105 Utricularia gibba HOM05D002505 ORTHO05D007115 4.2e-127 458.8 401 59.4
THA.LOC104823623 Tarenaya hassleriana HOM05D002505 ORTHO05D007115 7.2e-127 458.0 413 59.8
CDE11G0043 Ceratophyllum demersum HOM05D002505 ORTHO05D007115 1.6e-126 456.8 417 57.8
PGSC0003DMG400012246 Solanum tuberosum HOM05D002505 ORTHO05D007115 9.7e-124 447.6 345 68.4
PSO017G1033 Papaver somniferum HOM05D002505 ORTHO05D007115 6.3e-123 444.9 390 60.0
CAN.G567.73 Capsicum annuum HOM05D002505 ORTHO05D007115 1.4e-122 443.7 350 65.4
Aa31LG1G18070 Aethionema arabicum HOM05D002505 ORTHO05D007115 2.4e-122 443.0 419 56.3
MELO3C012450.2 Cucumis melo HOM05D002505 ORTHO05D007115 6.9e-122 441.4 372 65.1
EL10Ac5g12461 Beta vulgaris HOM05D002505 ORTHO05D007115 1.5e-121 440.3 356 62.4
Os10g0520700 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D007115 1.5e-121 440.3 391 56.0
Thhalv10004334m.g Eutrema salsugineum HOM05D002505 ORTHO05D007115 3.8e-120 435.6 410 57.6
Zm00001eb021220 Zea mays HOM05D002505 ORTHO05D007115 1.1e-119 434.1 406 53.7
Sp2g26890 Schrenkiella parvula HOM05D002505 ORTHO05D007115 1.4e-119 433.7 413 57.6
A06p30440 Brassica napus HOM05D002505 ORTHO05D007115 2.1e-118 429.9 414 57.5
CARHR277730 Cardamine hirsuta HOM05D002505 ORTHO05D007115 2.1e-118 429.9 414 56.3
PGR031G3103 Punica granatum HOM05D002505 ORTHO05D007115 4.7e-118 428.7 361 62.0
C03p62620 Brassica napus HOM05D002505 ORTHO05D007115 1.4e-117 427.2 412 56.6
BolC3t18519H Brassica oleracea HOM05D002505 ORTHO05D007115 2.3e-117 426.4 412 56.6
BraA06t25993Z Brassica rapa HOM05D002505 ORTHO05D007115 3.3e-116 422.5 413 55.7
ATR0757G152 Amborella trichopoda HOM05D002505 ORTHO05D007115 3.7e-115 419.1 390 57.9
BcaC01g02620 Brassica carinata HOM05D002505 ORTHO05D007115 3.7e-115 419.1 389 58.4
AT5G63830 Arabidopsis thaliana HOM05D002505 ORTHO05D007115 1.1e-114 417.5 410 55.1
Glyma.13G121900 Glycine max HOM05D002505 ORTHO05D007115 1.1e-114 417.5 347 63.4
ECA240G2126 Erigeron canadensis HOM05D002505 ORTHO05D007115 9.1e-114 414.5 352 61.6
SEGI_04382 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 1.9e-111 406.8 428 50.2
Carub.0008s2460 Capsella rubella HOM05D002505 ORTHO05D007115 1.6e-110 403.7 413 54.0
AL8G41060 Arabidopsis lyrata HOM05D002505 ORTHO05D007115 1.5e-108 397.1 411 53.8
HPP92_022335 Vanilla planifolia HOM05D002505 ORTHO05D007115 5.3e-106 388.7 444 46.6
HPP92_022360 Vanilla planifolia HOM05D002505 ORTHO05D007115 3.5e-105 386.0 457 45.7
FAN08G0319 Fragaria x ananassa HOM05D002505 ORTHO05D007115 6.5e-104 381.7 300 68.0
Sc22g0004750 Simmondsia chinensis HOM05D002505 ORTHO05D007115 1.0e-88 331.3 264 62.5
SMO348G0019 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 3.6e-86 322.8 368 46.7
Hma1.2p1_0456F.1_g156510 Hydrangea macrophylla HOM05D002505 ORTHO05D007115 8.9e-85 318.2 208 76.9
Pp3c16_17440 Physcomitrium patens HOM05D002505 ORTHO05D007115 7.5e-84 315.1 460 39.6
RhsimUnG0115700 Rhododendron simsii HOM05D002505 ORTHO05D007115 6.4e-83 312.0 260 63.1
vmacro04587 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 6.4e-83 312.0 352 53.4
Mapoly0049s0078 Marchantia polymorpha HOM05D002505 ORTHO05D007115 8.3e-83 311.6 466 38.2
SEGI_16855 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 5.4e-82 308.9 287 55.1
FAN13G3213 Fragaria x ananassa HOM05D002505 ORTHO05D007115 7.3e-71 271.9 181 74.6
Potri.001G085800 Populus trichocarpa HOM05D002505 ORTHO05D007115 9.5e-71 271.6 192 71.4
RcHm_v2.0_Chr7g0184121 Rosa chinensis HOM05D002505 ORTHO05D007115 8.9e-69 265.0 177 74.6
Atru.chr5.482 Acer truncatum HOM05D002505 ORTHO05D007115 2.5e-63 246.9 156 77.6
AagrBONN_evm.TU.Sc2ySwM_368.1194 Anthoceros agrestis HOM05D002505 ORTHO05D007115 9.9e-60 235.0 394 37.3
Medtr1g090530 Medicago truncatula HOM05D002505 ORTHO05D007115 1.4e-53 214.5 210 54.3
Rhsim10G0016900 Rhododendron simsii HOM05D000068 ORTHO05D004691 2.7e-49 200.3 133 74.4
Atru.chr5.483 Acer truncatum HOM05D002505 ORTHO05D007115 2.3e-48 197.2 131 74.8
MCO07G240 Micromonas commoda HOM05D002505 ORTHO05D007115 6.4e-43 179.1 397 31.7
Actinidia04163 Actinidia chinensis HOM05D002436 ORTHO05D002754 5.4e-42 176.0 166 57.8
Zm00001eb044440 Zea mays HOM05D002505 ORTHO05D007115 2.1e-41 174.1 150 58.7
SMO285G0002 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 6.6e-40 169.1 286 37.1
FAN14G3314 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.7e-35 154.5 135 57.8
CBR_g20449 Chara braunii HOM05D002505 ORTHO05D007115 8.4e-35 152.1 322 31.4
Sc22g0004760 Simmondsia chinensis HOM05D002505 ORTHO05D007115 8.4e-35 152.1 105 69.5
FAN05G1175 Fragaria x ananassa HOM05D002505 ORTHO05D007115 6.7e-32 142.5 99 72.7
FvH4_5g11280 Fragaria vesca HOM05D002505 ORTHO05D007115 8.1e-30 135.6 288 33.7
RcHm_v2.0_Chr7g0184131 Rosa chinensis HOM05D002505 ORTHO05D007115 2.7e-25 120.6 81 74.1
Cre08.g379050 Chlamydomonas reinhardtii HOM05D002505 ORTHO05D007115 2.8e-22 110.5 591 23.2
CSS0027773 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 1.9e-18 97.8 51 94.1
Oeu004999.3 Olea europaea HOM05D002505 ORTHO05D007115 9.7e-15 85.5 115 40.9
FvH4_3g32050 Fragaria vesca HOM05D002505 ORTHO05D045879 2.0e-12 77.8 95 47.4
BraA06t26113Z Brassica rapa HOM05D005837 ORTHO05D007594 2.5e-10 70.9 112 45.5
HanXRQChr03g0061211 Helianthus annuus HOM05D002505 ORTHO05D007115 3.6e-09 67.0 81 44.4
CSS0009274 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 2.3e-08 64.3 31 93.5
SMO348G0061 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 8.8e-08 62.4 156 30.1
MD05G1136200 Malus domestica HOM05D002505 ORTHO05D007115 6.3e-06 56.2 31 77.4
PRCOL_00002153 Prasinoderma coloniale HOM05D024116 ORTHO05D023526 8.2e-06 55.8 319 23.8


User provided reference genes

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