Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040639 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D110186 5.5e-33 143.7 70 100.0
CSS0047747 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D110790 5.5e-33 143.7 70 100.0
CSS0018364 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D113106 4.6e-32 140.6 70 98.6
CSS0018471 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D006344 2.7e-16 88.2 45 100.0
CSS0028505 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D000722 8.0e-16 86.7 45 97.8
CSS0034873 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D000722 8.0e-16 86.7 45 97.8
Rhsim02G0237900 Rhododendron simsii HOM05D000070 ORTHO05D006344 1.8e-15 85.5 45 95.6
Rhsim02G0238000 Rhododendron simsii HOM05D000070 ORTHO05D006344 2.3e-15 85.1 45 93.3
Rhsim02G0238200 Rhododendron simsii HOM05D000070 ORTHO05D006344 2.3e-15 85.1 45 93.3
vmacro14060 Vaccinium macrocarpon HOM05D000070 ORTHO05D006344 2.3e-15 85.1 45 93.3
vmacro01067 Vaccinium macrocarpon HOM05D000070 ORTHO05D006344 1.1e-14 82.8 45 91.1
ClCG05G023650 Citrullus lanatus HOM05D000070 ORTHO05D006344 2.6e-14 81.6 45 88.9
Sed0010273 Sechium edule HOM05D000070 ORTHO05D006344 2.6e-14 81.6 45 88.9
Peaxi162Scf00175g00320 Petunia axillaris HOM05D000070 ORTHO05D006344 5.7e-14 80.5 45 88.9
Potri.001G128700 Populus trichocarpa HOM05D000070 ORTHO05D006344 5.7e-14 80.5 45 86.7
Sabra01G0099000 Salix brachista HOM05D000070 ORTHO05D006344 5.7e-14 80.5 45 86.7
Glyma.02G118800 Glycine max HOM05D000070 ORTHO05D006344 7.4e-14 80.1 45 86.7
Prupe.1G288400 Prunus persica HOM05D000070 ORTHO05D006344 7.4e-14 80.1 45 88.9
CAN.G707.5 Capsicum annuum HOM05D000070 ORTHO05D006344 9.7e-14 79.7 45 86.7
ECA234G0905 Erigeron canadensis HOM05D000070 ORTHO05D006344 9.7e-14 79.7 45 84.4
Solyc05g012190.3 Solanum lycopersicum HOM05D000070 ORTHO05D006344 9.7e-14 79.7 45 86.7
Sopen05g007020 Solanum pennellii HOM05D000070 ORTHO05D006344 9.7e-14 79.7 45 86.7
COL.COLO4_27870 Corchorus olitorius HOM05D000070 ORTHO05D006344 1.3e-13 79.3 45 84.4
Nitab4.5_0007061g0080 Nicotiana tabacum HOM05D000070 ORTHO05D006344 1.7e-13 79.0 45 86.7
PSO017G7094 Papaver somniferum HOM05D000070 ORTHO05D006344 2.2e-13 78.6 45 82.2
GSVIVG01034378001 Vitis vinifera HOM05D000070 ORTHO05D000722 2.2e-13 78.6 45 86.7
MELO3C012157.2 Cucumis melo HOM05D000070 ORTHO05D006344 2.8e-13 78.2 45 84.4
Nn4g23451 Nelumbo nucifera HOM05D000070 ORTHO05D006344 2.8e-13 78.2 45 80.0
QL03p074004 Quercus lobata HOM05D000070 ORTHO05D006344 2.8e-13 78.2 45 84.4
QL03p074454 Quercus lobata HOM05D000070 ORTHO05D006344 2.8e-13 78.2 45 84.4
Ciclev10031132m.g Citrus clementina HOM05D000070 ORTHO05D006344 3.7e-13 77.8 45 84.4
PGSC0003DMG400028368 Solanum tuberosum HOM05D000070 ORTHO05D006344 3.7e-13 77.8 45 84.4
Gohir.A07G005400 Gossypium hirsutum HOM05D000070 ORTHO05D006344 4.8e-13 77.4 45 82.2
Gohir.D07G006600 Gossypium hirsutum HOM05D000070 ORTHO05D006344 4.8e-13 77.4 45 82.2
Gorai.001G006200 Gossypium raimondii HOM05D000070 ORTHO05D006344 4.8e-13 77.4 45 82.2
SalBow2G1167 Salvia bowleyana HOM05D000113 ORTHO05D006344 4.8e-13 77.4 45 82.2
Thecc.02G329400 Theobroma cacao HOM05D000070 ORTHO05D006344 4.8e-13 77.4 45 82.2
TAR365G1030 Trochodendron aralioides HOM05D000070 ORTHO05D006344 4.8e-13 77.4 45 86.7
TAR371G0409 Trochodendron aralioides HOM05D000070 ORTHO05D006344 4.8e-13 77.4 45 86.7
VMungo1215G2913 Vigna mungo HOM05D000070 ORTHO05D006344 4.8e-13 77.4 46 78.3
arahy.Tifrunner.gnm1.ann1.9AW2B2 Arachis hypogaea HOM05D000070 ORTHO05D006344 6.3e-13 77.0 45 82.2
PSO478G0742 Papaver somniferum HOM05D000070 ORTHO05D006344 6.3e-13 77.0 44 81.8
PSO478G2435 Papaver somniferum HOM05D000070 ORTHO05D006344 6.3e-13 77.0 44 81.8
CSS0038248 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D033897 8.2e-13 76.6 41 95.1
Cc00_g25790 Coffea canephora HOM05D000070 ORTHO05D006344 8.2e-13 76.6 45 84.4
Cc03_g11280 Coffea canephora HOM05D000070 ORTHO05D033897 8.2e-13 76.6 45 84.4
Duzib251G0829 Durio zibethinus HOM05D000070 ORTHO05D006344 8.2e-13 76.6 45 80.0
HanXRQChr17g0568381 Helianthus annuus HOM05D000070 ORTHO05D006344 8.2e-13 76.6 45 80.0
Lj6C778T15 Lonicera japonica HOM05D000070 ORTHO05D006344 8.2e-13 76.6 45 82.2
MD16G1060100 Malus domestica HOM05D000070 ORTHO05D006344 8.2e-13 76.6 45 84.4
Manes.04G050400 Manihot esculenta HOM05D000070 ORTHO05D006344 8.2e-13 76.6 45 82.2
Nitab4.5_0000231g0160 Nicotiana tabacum HOM05D000070 ORTHO05D006344 8.2e-13 76.6 45 84.4
Phvul.003G041700 Phaseolus vulgaris HOM05D000070 ORTHO05D006344 8.2e-13 76.6 46 78.3
CANSAT11G2528 Cannabis sativa HOM05D000070 ORTHO05D006344 1.1e-12 76.3 45 82.2
arahy.Tifrunner.gnm1.ann1.Z90ZKN Arachis hypogaea HOM05D000070 ORTHO05D006344 1.4e-12 75.9 45 82.2
MSTRG.13451 Avicennia marina HOM05D000070 ORTHO05D006344 1.4e-12 75.9 45 84.4
EL10Ac6g15010 Beta vulgaris HOM05D000070 ORTHO05D006344 1.4e-12 75.9 45 82.2
Lsat_1_v5_gn_4_11741 Lactuca sativa HOM05D000070 ORTHO05D006344 1.4e-12 75.9 45 77.8
RcHm_v2.0_Chr4g0438121 Rosa chinensis HOM05D000070 ORTHO05D006344 1.4e-12 75.9 45 82.2
Atru.chr11.1617 Acer truncatum HOM05D000070 ORTHO05D006344 1.8e-12 75.5 45 82.2
Aqoxy2G01115 Aquilegia oxysepala HOM05D000070 ORTHO05D006344 1.8e-12 75.5 45 80.0
CiPaw.06G092600 Carya illinoinensis HOM05D000070 ORTHO05D006344 1.8e-12 75.5 45 80.0
Haze_11898 Corylus avellana HOM05D000070 ORTHO05D006344 1.8e-12 75.5 45 80.0
TAR371G0020 Trochodendron aralioides HOM05D000070 ORTHO05D006344 1.8e-12 75.5 45 84.4
ATR0177G056 Amborella trichopoda HOM05D000070 ORTHO05D006344 2.4e-12 75.1 45 82.2
CSS0009054 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D033897 2.4e-12 75.1 41 92.7
Cc03_g11290 Coffea canephora HOM05D000070 ORTHO05D006344 2.4e-12 75.1 45 82.2
CsaV3_5G033370 Cucumis sativus L. HOM05D000070 ORTHO05D006344 2.4e-12 75.1 45 80.0
SGA_v2.0_scaffold257G45707 Striga asiatica HOM05D000070 ORTHO05D006344 2.4e-12 75.1 45 77.8
TWI31G0249 Tripterygium wilfordii HOM05D000070 ORTHO05D006344 2.4e-12 75.1 42 83.3
TWI31G0934 Tripterygium wilfordii HOM05D000070 ORTHO05D006344 2.4e-12 75.1 42 83.3
Ah.03g138860 Amaranthus hybridus HOM05D000070 ORTHO05D006344 3.1e-12 74.7 45 82.2
Cc11_g11890 Coffea canephora HOM05D000070 ORTHO05D006344 3.1e-12 74.7 45 82.2
Lalb_Chr17g0341241 Lupinus albus HOM05D000070 ORTHO05D006344 3.1e-12 74.7 46 78.3
Aqoxy1G00608 Aquilegia oxysepala HOM05D000070 ORTHO05D006344 5.3e-12 73.9 45 77.8
PGR119G0539 Punica granatum HOM05D000070 ORTHO05D006344 5.3e-12 73.9 45 77.8
QL03p074523 Quercus lobata HOM05D000070 ORTHO05D006344 5.3e-12 73.9 45 80.0
QL03p073969 Quercus lobata HOM05D000070 ORTHO05D006344 7.0e-12 73.6 45 82.2
FAN22G1193 Fragaria x ananassa HOM05D000070 ORTHO05D006344 9.1e-12 73.2 45 80.0
Cfa008871 Carpinus fangiana HOM05D000070 ORTHO05D006344 1.6e-11 72.4 45 77.8
AUR62003090 Chenopodium quinoa HOM05D000070 ORTHO05D006344 1.6e-11 72.4 45 77.8
AUR62007907 Chenopodium quinoa HOM05D000070 ORTHO05D006344 1.6e-11 72.4 45 77.8
Lj1g0014852 Lotus japonicus HOM05D000070 ORTHO05D006344 1.6e-11 72.4 45 77.8
FvH4_4g29870 Fragaria vesca HOM05D000070 ORTHO05D006344 2.6e-11 71.6 45 77.8
FAN07G2606 Fragaria x ananassa HOM05D000070 ORTHO05D006344 2.6e-11 71.6 45 77.8
FAN12G0985 Fragaria x ananassa HOM05D000070 ORTHO05D006344 2.6e-11 71.6 45 77.8
FAN17G0562 Fragaria x ananassa HOM05D000070 ORTHO05D006344 2.6e-11 71.6 45 77.8
Medtr7g088980 Medicago truncatula HOM05D000070 ORTHO05D006344 2.6e-11 71.6 46 71.7
Cpa.g.sc1.136 Carica papaya HOM05D000070 ORTHO05D006344 3.5e-11 71.2 45 75.6
Hund05835 Selenicereus undatus HOM05D000070 ORTHO05D006344 3.5e-11 71.2 45 77.8
Ca_08367_v3 Cicer arietinum L. HOM05D000070 ORTHO05D006344 4.5e-11 70.9 45 75.6
Thhalv10003859m.g Eutrema salsugineum HOM05D000070 ORTHO05D006344 4.5e-11 70.9 46 71.7
Migut.J01072 Erythranthe guttata HOM05D000070 ORTHO05D006344 5.9e-11 70.5 45 75.6
C07p34020 Brassica napus HOM05D005523 ORTHO05D007089 7.7e-11 70.1 46 69.6
BolC7t43916H Brassica oleracea HOM05D005523 ORTHO05D007089 7.7e-11 70.1 46 69.6
QL03p073983 Quercus lobata HOM05D000070 ORTHO05D006344 7.7e-11 70.1 45 77.8
DCAR_030045 Daucus carota HOM05D000070 ORTHO05D006344 1.0e-10 69.7 45 71.1
TPR.G22677 Trifolium pratense HOM05D000070 ORTHO05D006344 1.0e-10 69.7 46 71.7
CDE05G0678 Ceratophyllum demersum HOM05D000070 ORTHO05D006344 1.3e-10 69.3 45 75.6
MBI19_g41556_MAGBIO Magnolia biondii HOM05D000070 ORTHO05D006344 1.3e-10 69.3 46 69.6
THA.LOC104801824 Tarenaya hassleriana HOM05D000070 ORTHO05D006344 1.3e-10 69.3 46 69.6
Zm00001eb425850 Zea mays HOM05D000070 ORTHO05D006344 1.3e-10 69.3 45 73.3
Psat3g081320 Pisum sativum HOM05D000070 ORTHO05D006344 1.7e-10 68.9 46 67.4
A09p24520 Brassica napus HOM05D000070 ORTHO05D006344 2.2e-10 68.6 46 69.6
Eucgr.G02441 Eucalyptus grandis HOM05D000070 ORTHO05D006344 2.2e-10 68.6 46 71.7
Sp2g14350 Schrenkiella parvula HOM05D000070 ORTHO05D006344 2.2e-10 68.6 46 67.4
BcaC06g31164 Brassica carinata HOM05D005523 ORTHO05D006344 2.9e-10 68.2 46 67.4
Carub.0005s0280 Capsella rubella HOM05D000070 ORTHO05D006344 2.9e-10 68.2 46 67.4
SEGI_05577 Sequoiadendron giganteum HOM05D000070 ORTHO05D006344 3.8e-10 67.8 47 72.3
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 5.0e-10 67.4 46 67.4
C09p31430 Brassica napus HOM05D000070 ORTHO05D006344 5.0e-10 67.4 46 67.4
BolC9t56003H Brassica oleracea HOM05D000070 ORTHO05D006344 5.0e-10 67.4 46 67.4
Aa31LG2G7010 Aethionema arabicum HOM05D005523 ORTHO05D007089 6.5e-10 67.0 46 65.2
AL5G13450 Arabidopsis lyrata HOM05D000070 ORTHO05D006344 6.5e-10 67.0 46 65.2
CARHR146000 Cardamine hirsuta HOM05D000070 ORTHO05D006344 6.5e-10 67.0 46 67.4
AT2G03670 Arabidopsis thaliana HOM05D000070 ORTHO05D006344 1.1e-09 66.2 46 65.2
BcaB07g30661 Brassica carinata HOM05D005523 ORTHO05D007089 1.5e-09 65.9 46 65.2
HPP92_006114 Vanilla planifolia HOM05D000070 ORTHO05D006344 4.2e-09 64.3 46 65.2
Medtr7g088850 Medicago truncatula HOM05D000070 ORTHO05D006344 2.7e-08 61.6 50 60.0
Os04g0498800 Oryza sativa ssp. japonica HOM05D000070 ORTHO05D006344 1.8e-07 58.9 40 67.5
Mapoly0149s0015 Marchantia polymorpha HOM05D000070 ORTHO05D006344 4.0e-07 57.8 47 57.4
CBR_g54905 Chara braunii HOM05D000019 ORTHO05D000002 6.7e-07 57.0 45 62.2
SMO147G0197 Selaginella moellendorffii HOM05D000070 ORTHO05D006344 1.2e-06 56.2 46 67.4
AagrBONN_evm.TU.Sc2ySwM_362.1946 Anthoceros agrestis HOM05D000070 ORTHO05D006344 3.3e-06 54.7 47 59.6
Actinidia33245 Actinidia chinensis HOM05D002141 ORTHO05D002119 5.7e-06 53.9 27 96.3
Pp3c21_20700 Physcomitrium patens HOM05D000070 ORTHO05D006344 9.7e-06 53.1 39 61.5


User provided reference genes

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