Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047744 Camellia sinensis var. sinensis HOM05D003064 ORTHO05D001733 2.3e-57 225.3 114 100.0
CSS0002758 Camellia sinensis var. sinensis HOM05D003064 ORTHO05D001733 2.9e-31 138.7 114 63.2
Manes.10G152800 Manihot esculenta HOM05D003064 ORTHO05D001733 1.7e-28 129.4 111 64.9
Hma1.2p1_0128F.1_g059830 Hydrangea macrophylla HOM05D003064 ORTHO05D001733 1.5e-27 126.3 97 67.0
Lalb_Chr25g0283731 Lupinus albus HOM05D003064 ORTHO05D001733 1.5e-27 126.3 112 58.0
Prupe.2G001900 Prunus persica HOM05D003064 ORTHO05D001733 1.5e-27 126.3 114 60.5
MSTRG.17073 Avicennia marina HOM05D003064 ORTHO05D001733 1.2e-26 123.2 109 56.9
Atru.chr11.2712 Acer truncatum HOM05D003064 ORTHO05D001733 1.6e-26 122.9 108 59.3
PSO339G6128 Papaver somniferum HOM05D003064 ORTHO05D001733 1.6e-26 122.9 115 58.3
PSO384G3054 Papaver somniferum HOM05D003064 ORTHO05D001733 1.6e-26 122.9 115 58.3
ClCG09G003670 Citrullus lanatus HOM05D003064 ORTHO05D001733 2.1e-26 122.5 113 59.3
Aqoxy1G00039 Aquilegia oxysepala HOM05D003064 ORTHO05D001733 6.2e-26 120.9 113 57.5
Oeu060706.1 Olea europaea HOM05D003064 ORTHO05D001733 6.2e-26 120.9 112 56.2
Haze_03274 Corylus avellana HOM05D003064 ORTHO05D001733 8.1e-26 120.6 112 58.9
Cfa010704 Carpinus fangiana HOM05D003064 ORTHO05D001733 1.1e-25 120.2 112 58.0
CsaV3_7G031520 Cucumis sativus L. HOM05D003064 ORTHO05D001733 1.4e-25 119.8 111 57.7
Sed0005920 Sechium edule HOM05D003064 ORTHO05D001733 1.4e-25 119.8 111 58.6
Medtr2g062220 Medicago truncatula HOM05D003064 ORTHO05D001733 1.8e-25 119.4 112 55.4
Phvul.005G042500 Phaseolus vulgaris HOM05D003064 ORTHO05D001733 1.8e-25 119.4 113 55.8
Migut.B01404 Erythranthe guttata HOM05D003064 ORTHO05D001733 2.4e-25 119.0 106 55.7
HanXRQChr16g0520931 Helianthus annuus HOM05D003064 ORTHO05D001733 2.4e-25 119.0 108 54.6
Lj3g0018900 Lotus japonicus HOM05D003064 ORTHO05D001733 2.4e-25 119.0 112 55.4
Ca_03208_v3 Cicer arietinum L. HOM05D003064 ORTHO05D001733 3.1e-25 118.6 111 55.9
Cc02_g26840 Coffea canephora HOM05D003064 ORTHO05D001733 3.1e-25 118.6 114 55.3
TAR633G1282 Trochodendron aralioides HOM05D003064 ORTHO05D001733 6.9e-25 117.5 112 56.2
Glyma.08G158500 Glycine max HOM05D003064 ORTHO05D001733 1.5e-24 116.3 112 54.5
HanXRQChr17g0564171 Helianthus annuus HOM05D003064 ORTHO05D001733 2.0e-24 115.9 107 53.3
TPR.G16147 Trifolium pratense HOM05D003064 ORTHO05D001733 2.0e-24 115.9 111 54.1
TWI38G0681 Tripterygium wilfordii HOM05D003064 ORTHO05D001733 2.0e-24 115.9 109 56.9
Sopen01g033250 Solanum pennellii HOM05D003064 ORTHO05D001733 2.6e-24 115.5 106 54.7
TAR369G0713 Trochodendron aralioides HOM05D003064 ORTHO05D001733 3.4e-24 115.2 112 57.1
Potri.009G024500 Populus trichocarpa HOM05D003064 ORTHO05D001733 4.4e-24 114.8 112 54.5
MD11G1012600 Malus domestica HOM05D003064 ORTHO05D001733 5.8e-24 114.4 110 56.4
Sed0014538 Sechium edule HOM05D003064 ORTHO05D001733 1.3e-23 113.2 114 57.0
Eucgr.B03628 Eucalyptus grandis HOM05D003064 ORTHO05D001733 1.7e-23 112.8 118 50.0
Potri.001G231300 Populus trichocarpa HOM05D003064 ORTHO05D001733 1.7e-23 112.8 112 54.5
PGSC0003DMG400028989 Solanum tuberosum HOM05D003064 ORTHO05D001733 1.7e-23 112.8 106 54.7
Glyma.15G267900 Glycine max HOM05D003064 ORTHO05D001733 3.8e-23 111.7 113 52.2
MD03G1010800 Malus domestica HOM05D003064 ORTHO05D001733 6.4e-23 110.9 110 55.5
Prupe.6G010700 Prunus persica HOM05D003064 ORTHO05D001733 6.4e-23 110.9 110 55.5
Nn7g35954 Nelumbo nucifera HOM05D003064 ORTHO05D001733 1.1e-22 110.2 107 57.9
GSVIVG01001351001 Vitis vinifera HOM05D003064 ORTHO05D001733 1.1e-22 110.2 109 53.2
Medtr5g084250 Medicago truncatula HOM05D003064 ORTHO05D001733 1.9e-22 109.4 110 51.8
CANSAT11G2107 Cannabis sativa HOM05D003064 ORTHO05D001733 2.4e-22 109.0 117 50.4
FvH4_3g44730 Fragaria vesca HOM05D003064 ORTHO05D001733 2.4e-22 109.0 110 54.5
Rhsim07G0049500 Rhododendron simsii HOM05D003064 ORTHO05D001733 4.2e-22 108.2 103 57.3
CANSAT11G1331 Cannabis sativa HOM05D003064 ORTHO05D001733 5.4e-22 107.8 115 51.3
THA.LOC104826176 Tarenaya hassleriana HOM05D003064 ORTHO05D001733 5.4e-22 107.8 108 51.9
FAN16G3363 Fragaria x ananassa HOM05D003064 ORTHO05D001733 7.1e-22 107.5 110 53.6
TAR623G1618 Trochodendron aralioides HOM05D003064 ORTHO05D001733 7.1e-22 107.5 108 52.8
Eucgr.J01788 Eucalyptus grandis HOM05D003064 ORTHO05D001733 9.3e-22 107.1 112 50.9
Oeu032780.1 Olea europaea HOM05D003064 ORTHO05D001733 9.3e-22 107.1 113 52.2
QL01p010327 Quercus lobata HOM05D003064 ORTHO05D001733 9.3e-22 107.1 112 52.7
Duzib150G0559 Durio zibethinus HOM05D003064 ORTHO05D001733 1.2e-21 106.7 108 52.8
TPR.G32947 Trifolium pratense HOM05D003064 ORTHO05D001733 1.6e-21 106.3 111 53.2
BcaB02g10426 Brassica carinata HOM05D003064 ORTHO05D001733 2.7e-21 105.5 107 52.3
Lalb_Chr01g0014941 Lupinus albus HOM05D003064 ORTHO05D001733 2.7e-21 105.5 112 50.9
Medtr5g084240 Medicago truncatula HOM05D003064 ORTHO05D001733 2.7e-21 105.5 111 52.3
CAN.G1361.1 Capsicum annuum HOM05D003064 ORTHO05D001733 3.5e-21 105.1 106 51.9
Manes.03G089000 Manihot esculenta HOM05D003064 ORTHO05D001733 3.5e-21 105.1 114 51.8
ATR0598G068 Amborella trichopoda HOM05D003064 ORTHO05D001733 4.6e-21 104.8 115 52.2
A05p13650 Brassica napus HOM05D003064 ORTHO05D001733 4.6e-21 104.8 107 52.3
BraA05t20303Z Brassica rapa HOM05D003064 ORTHO05D001733 4.6e-21 104.8 107 52.3
AL4G27240 Arabidopsis lyrata HOM05D003064 ORTHO05D001733 6.0e-21 104.4 108 53.7
AL80U10020 Arabidopsis lyrata HOM05D003064 ORTHO05D001733 6.0e-21 104.4 108 53.7
FAN21G3633 Fragaria x ananassa HOM05D003064 ORTHO05D001733 6.0e-21 104.4 107 54.2
Os09g0445600 Oryza sativa ssp. japonica HOM05D003064 ORTHO05D001733 6.0e-21 104.4 116 50.0
Potri.003G216100 Populus trichocarpa HOM05D003064 ORTHO05D001733 7.8e-21 104.0 114 50.9
Thecc.09G214300 Theobroma cacao HOM05D003064 ORTHO05D001733 7.8e-21 104.0 105 54.3
CiPaw.13G172000 Carya illinoinensis HOM05D003064 ORTHO05D001733 1.0e-20 103.6 111 47.7
FAN25G3035 Fragaria x ananassa HOM05D003064 ORTHO05D001733 1.0e-20 103.6 107 53.3
Phvul.008G217700 Phaseolus vulgaris HOM05D003064 ORTHO05D001733 1.0e-20 103.6 111 49.5
Sabra09G0016100 Salix brachista HOM05D003064 ORTHO05D001733 1.7e-20 102.8 113 48.7
VMungo0647G0318 Vigna mungo HOM05D003064 ORTHO05D001733 1.7e-20 102.8 112 49.1
BcaC02g11300 Brassica carinata HOM05D003064 ORTHO05D001733 2.3e-20 102.4 107 51.4
C04p17820 Brassica napus HOM05D003064 ORTHO05D001733 2.3e-20 102.4 107 51.4
BolC4t23330H Brassica oleracea HOM05D003064 ORTHO05D001733 2.3e-20 102.4 107 51.4
Nn2g15754 Nelumbo nucifera HOM05D003064 ORTHO05D001733 3.0e-20 102.1 112 48.2
PGR102G0542 Punica granatum HOM05D003064 ORTHO05D001733 3.0e-20 102.1 116 46.6
PGR119G0056 Punica granatum HOM05D003064 ORTHO05D001733 3.9e-20 101.7 112 51.8
VMungo1080G1851 Vigna mungo HOM05D003064 ORTHO05D001733 3.9e-20 101.7 113 48.7
Aqoxy2G00087 Aquilegia oxysepala HOM05D003064 ORTHO05D001733 5.1e-20 101.3 115 50.4
Lalb_Chr10g0105471 Lupinus albus HOM05D003064 ORTHO05D001733 5.1e-20 101.3 111 49.5
Rhsim01G0185600 Rhododendron simsii HOM05D003064 ORTHO05D001733 5.1e-20 101.3 114 46.5
Glyma.14G053000 Glycine max HOM05D003064 ORTHO05D001733 6.6e-20 100.9 111 48.6
RcHm_v2.0_Chr5g0081431 Rosa chinensis HOM05D003064 ORTHO05D001733 1.1e-19 100.1 112 52.7
Ciclev10017191m.g Citrus clementina HOM05D003064 ORTHO05D001733 1.9e-19 99.4 111 49.5
AT2G31940 Arabidopsis thaliana HOM05D003064 ORTHO05D001733 2.5e-19 99.0 108 51.9
Thhalv10017436m.g Eutrema salsugineum HOM05D003064 ORTHO05D001733 2.5e-19 99.0 107 51.4
Glyma.02G258600 Glycine max HOM05D003064 ORTHO05D001733 2.5e-19 99.0 111 47.7
LjContig00357g0022496 Lotus japonicus HOM05D003064 ORTHO05D001733 2.5e-19 99.0 111 48.6
Cpa.g.sc119.86 Carica papaya HOM05D003064 ORTHO05D001733 3.3e-19 98.6 108 50.9
Carub.0004s1324 Capsella rubella HOM05D003064 ORTHO05D001733 4.3e-19 98.2 110 50.0
PGSC0003DMG400015948 Solanum tuberosum HOM05D003064 ORTHO05D001733 5.6e-19 97.8 111 48.6
Solyc10g044880.1 Solanum lycopersicum HOM05D003064 ORTHO05D001733 7.3e-19 97.4 110 49.1
Sopen10g013830 Solanum pennellii HOM05D003064 ORTHO05D001733 7.3e-19 97.4 110 49.1
AT5G19875 Arabidopsis thaliana HOM05D003064 ORTHO05D001733 1.6e-18 96.3 102 49.0
arahy.Tifrunner.gnm1.ann1.ZL4T1U Arachis hypogaea HOM05D003064 ORTHO05D001733 1.6e-18 96.3 104 51.9
Duzib168G1332 Durio zibethinus HOM05D003064 ORTHO05D001733 1.6e-18 96.3 101 53.5
Cc01_g01060 Coffea canephora HOM05D003064 ORTHO05D001733 2.1e-18 95.9 115 47.0
QL04p001663 Quercus lobata HOM05D003064 ORTHO05D001733 2.1e-18 95.9 93 55.9
Cpa.g.sc1500.2 Carica papaya HOM05D003064 ORTHO05D001733 4.8e-18 94.7 110 44.5
Gohir.A13G213900 Gossypium hirsutum HOM05D003064 ORTHO05D001733 4.8e-18 94.7 108 46.3
Gohir.D13G217700 Gossypium hirsutum HOM05D003064 ORTHO05D001733 4.8e-18 94.7 108 46.3
Gorai.013G248300 Gossypium raimondii HOM05D003064 ORTHO05D001733 4.8e-18 94.7 108 46.3
Zm00001eb314350 Zea mays HOM05D003064 ORTHO05D001733 8.1e-18 94.0 118 44.1
AL6G31410 Arabidopsis lyrata HOM05D003064 ORTHO05D001733 1.1e-17 93.6 102 48.0
Haze_22989 Corylus avellana HOM05D003064 ORTHO05D001733 1.1e-17 93.6 92 54.3
THA.LOC104807528 Tarenaya hassleriana HOM05D003064 ORTHO05D001733 1.1e-17 93.6 103 50.5
Lsat_1_v5_gn_6_50860 Lactuca sativa HOM05D003064 ORTHO05D001733 1.4e-17 93.2 114 45.6
arahy.Tifrunner.gnm1.ann1.GF7MHW Arachis hypogaea HOM05D003064 ORTHO05D001733 1.8e-17 92.8 104 51.0
CSS0014301 Camellia sinensis var. sinensis HOM05D003064 ORTHO05D001733 3.1e-17 92.0 114 43.9
Sc09g0000290 Simmondsia chinensis HOM05D003064 ORTHO05D001733 3.1e-17 92.0 112 46.4
HPP92_004380 Vanilla planifolia HOM05D003064 ORTHO05D001733 3.1e-17 92.0 113 46.0
Atru.chr3.2230 Acer truncatum HOM05D003064 ORTHO05D001733 5.3e-17 91.3 95 49.5
CARHR125650 Cardamine hirsuta HOM05D003064 ORTHO05D001733 5.3e-17 91.3 107 46.7
Aa31LG1G14330 Aethionema arabicum HOM05D003064 ORTHO05D001733 6.9e-17 90.9 102 46.1
Aa31LG5G5080 Aethionema arabicum HOM05D003064 ORTHO05D001733 6.9e-17 90.9 104 49.0
Gorai.004G017800 Gossypium raimondii HOM05D003064 ORTHO05D001733 6.9e-17 90.9 104 47.1
HanXRQChr02g0056621 Helianthus annuus HOM05D003064 ORTHO05D001733 9.0e-17 90.5 117 41.0
SalBow3G3394 Salvia bowleyana HOM05D003064 ORTHO05D001733 9.0e-17 90.5 116 41.4
Gohir.D08G022500 Gossypium hirsutum HOM05D003064 ORTHO05D001733 1.2e-16 90.1 104 47.1
Gohir.A08G012000 Gossypium hirsutum HOM05D003064 ORTHO05D001733 1.5e-16 89.7 104 47.1
Potri.001G009200 Populus trichocarpa HOM05D003064 ORTHO05D001733 2.6e-16 89.0 106 50.0
A10p19870 Brassica napus HOM05D003064 ORTHO05D001733 4.5e-16 88.2 106 43.4
BraA10t44062Z Brassica rapa HOM05D003064 ORTHO05D001733 4.5e-16 88.2 106 43.4
Sp6g24510 Schrenkiella parvula HOM05D003064 ORTHO05D001733 4.5e-16 88.2 102 46.1
BcaC04g19393 Brassica carinata HOM05D003064 ORTHO05D001733 5.8e-16 87.8 106 43.4
BolC9t58489H Brassica oleracea HOM05D003064 ORTHO05D001733 5.8e-16 87.8 106 43.4
Thhalv10015028m.g Eutrema salsugineum HOM05D003064 ORTHO05D001733 7.6e-16 87.4 108 46.3
Oeu049545.1 Olea europaea HOM05D003064 ORTHO05D001733 7.6e-16 87.4 116 40.5
MSTRG.18858 Avicennia marina HOM05D003064 ORTHO05D001733 2.2e-15 85.9 116 40.5
BcaB01g04845 Brassica carinata HOM05D003064 ORTHO05D001733 2.2e-15 85.9 102 44.1
BcaC03g15831 Brassica carinata HOM05D003064 ORTHO05D001733 2.9e-15 85.5 106 42.5
Carub.0006s1824 Capsella rubella HOM05D003064 ORTHO05D001733 2.9e-15 85.5 102 45.1
BcaB08g36562 Brassica carinata HOM05D003064 ORTHO05D001733 3.8e-15 85.1 110 41.8
A03p09690 Brassica napus HOM05D003064 ORTHO05D001733 3.8e-15 85.1 102 44.1
BcaB01g04824 Brassica carinata HOM05D003064 ORTHO05D001733 8.4e-15 84.0 102 43.1
BolC3t13597H Brassica oleracea HOM05D003064 ORTHO05D001733 8.4e-15 84.0 102 43.1
BraA03t10285Z Brassica rapa HOM05D003064 ORTHO05D001733 8.4e-15 84.0 102 43.1
unitig_749.g13489 Utricularia gibba HOM05D002499 ORTHO05D002812 1.1e-14 83.6 116 38.8
C02p35760 Brassica napus HOM05D003064 ORTHO05D001733 1.4e-14 83.2 106 41.5
Migut.N00578 Erythranthe guttata HOM05D003064 ORTHO05D001733 1.4e-14 83.2 117 42.7
THA.LOC104811059 Tarenaya hassleriana HOM05D003064 ORTHO05D001733 3.2e-14 82.0 105 45.7
CARHR192990 Cardamine hirsuta HOM05D003064 ORTHO05D001733 5.4e-14 81.3 106 40.6
Sp4g14300 Schrenkiella parvula HOM05D003064 ORTHO05D001733 5.4e-14 81.3 108 44.4
BcaC04g19388 Brassica carinata HOM05D003064 ORTHO05D001733 7.1e-14 80.9 106 41.5
C09p56240 Brassica napus HOM05D003064 ORTHO05D001733 7.1e-14 80.9 106 41.5
BolC9t58493H Brassica oleracea HOM05D003064 ORTHO05D001733 7.1e-14 80.9 106 41.5
HPP92_016185 Vanilla planifolia HOM05D003064 ORTHO05D001733 7.1e-14 80.9 109 45.9
HPP92_026732 Vanilla planifolia HOM05D003064 ORTHO05D001733 9.3e-14 80.5 110 45.5
SHI30463 Sapria himalayana HOM05D003064 ORTHO05D001733 2.7e-13 79.0 115 39.1
ClCG02G023860 Citrullus lanatus HOM05D003064 ORTHO05D001733 4.6e-13 78.2 104 42.3
MELO3C014664.2 Cucumis melo HOM05D003064 ORTHO05D001733 5.6e-11 71.2 108 38.9
PSO478G3040 Papaver somniferum HOM05D003064 ORTHO05D001733 7.4e-11 70.9 115 38.3
PSO782G3341 Papaver somniferum HOM05D003064 ORTHO05D001733 1.3e-10 70.1 112 40.2
FAN11G1424 Fragaria x ananassa HOM05D003064 ORTHO05D001733 4.8e-10 68.2 86 46.5
Ah.06g193070 Amaranthus hybridus HOM05D005880 ORTHO05D007114 8.1e-10 67.4 75 45.3
MBI13_g29639_MAGBIO Magnolia biondii HOM05D003064 ORTHO05D001733 1.8e-09 66.2 90 44.4
Sed0002402 Sechium edule HOM05D003064 ORTHO05D001733 2.4e-09 65.9 109 36.7
Zm00001eb256560 Zea mays HOM05D003064 ORTHO05D001733 4.0e-09 65.1 125 34.4
Actinidia25683 Actinidia chinensis HOM05D003064 ORTHO05D001733 5.3e-09 64.7 65 52.3
Actinidia31714 Actinidia chinensis HOM05D003064 ORTHO05D001733 5.3e-09 64.7 65 52.3
MBI13_g29645_MAGBIO Magnolia biondii HOM05D003064 ORTHO05D001733 1.2e-08 63.5 91 39.6
ATR0810G150 Amborella trichopoda HOM05D005726 ORTHO05D001733 1.5e-08 63.2 103 35.9
Lsat_1_v5_gn_2_9581 Lactuca sativa HOM05D005726 ORTHO05D001733 3.8e-07 58.5 103 34.0
Lsat_1_v5_gn_4_42560 Lactuca sativa HOM05D003064 ORTHO05D001733 1.4e-06 56.6 57 49.1
ATR1042G001 Amborella trichopoda HOM05D003064 ORTHO05D009659 3.2e-06 55.5 112 33.9
Lsat_1_v5_gn_8_125840 Lactuca sativa HOM05D007714 ORTHO05D009659 3.2e-06 55.5 112 30.4
Nn1g05896 Nelumbo nucifera HOM05D005726 ORTHO05D001733 3.2e-06 55.5 104 38.5
MBI09_g26111_MAGBIO Magnolia biondii HOM05D003064 ORTHO05D009659 5.5e-06 54.7 113 33.6
Cfa005182 Carpinus fangiana HOM05D005726 ORTHO05D001733 7.1e-06 54.3 105 31.4
TAR625G1501 Trochodendron aralioides HOM05D005726 ORTHO05D001733 7.1e-06 54.3 104 35.6


User provided reference genes

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