Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047726 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 1.6e-166 589.3 296 100.0
CSS0019806 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 3.7e-147 525.0 307 89.3
CSS0007502 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 5.3e-146 521.2 307 88.6
CSS0006992 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 3.8e-144 515.0 307 87.6
CSS0012197 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 8.8e-133 477.2 307 83.1
Actinidia29930 Actinidia chinensis HOM05D004023 ORTHO05D004681 4.7e-102 375.2 307 66.4
Dinv42390 Davidia involucrata HOM05D004023 ORTHO05D004681 8.4e-91 337.8 306 61.8
TAR383G0448 Trochodendron aralioides HOM05D004023 ORTHO05D004681 7.6e-84 314.7 306 55.9
CiPaw.03G206900 Carya illinoinensis HOM05D004023 ORTHO05D004681 3.8e-83 312.4 306 57.5
Haze_26009 Corylus avellana HOM05D004023 ORTHO05D004681 1.2e-81 307.4 305 57.7
Thecc.09G077600 Theobroma cacao HOM05D004023 ORTHO05D004681 2.7e-81 306.2 295 56.9
GSVIVG01015086001 Vitis vinifera HOM05D004023 ORTHO05D004681 4.6e-81 305.4 265 61.5
Cfa002993 Carpinus fangiana HOM05D004023 ORTHO05D004681 1.3e-80 303.9 305 57.0
Potri.006G142100 Populus trichocarpa HOM05D004023 ORTHO05D004681 1.1e-79 300.8 307 54.1
CANSAT56G0673 Cannabis sativa HOM05D004023 ORTHO05D004681 1.3e-78 297.4 297 55.9
Sabra06G0111200 Salix brachista HOM05D004023 ORTHO05D004681 3.6e-78 295.8 308 54.5
Atru.chr7.1700 Acer truncatum HOM05D004023 ORTHO05D004681 6.9e-77 291.6 308 53.6
Prupe.7G199400 Prunus persica HOM05D004023 ORTHO05D004681 2.0e-76 290.0 306 51.6
QL11p000695 Quercus lobata HOM05D004023 ORTHO05D004681 4.5e-76 288.9 287 56.4
Eucgr.C00816 Eucalyptus grandis HOM05D004023 ORTHO05D004681 1.3e-75 287.3 311 53.4
Gohir.A06G076200 Gossypium hirsutum HOM05D004023 ORTHO05D004681 1.3e-75 287.3 295 55.3
BcaB06g26883 Brassica carinata HOM05D004023 ORTHO05D004681 1.4e-74 283.9 268 57.8
Lj6g0013866 Lotus japonicus HOM05D004023 ORTHO05D004681 1.4e-74 283.9 313 53.0
AL3G43670 Arabidopsis lyrata HOM05D004023 ORTHO05D004681 2.4e-74 283.1 265 57.7
A07p06280 Brassica napus HOM05D004023 ORTHO05D004681 3.2e-74 282.7 268 57.8
MD02G1091000 Malus domestica HOM05D004023 ORTHO05D004681 3.2e-74 282.7 296 52.7
AT2G06025 Arabidopsis thaliana HOM05D004023 ORTHO05D004681 4.2e-74 282.3 269 57.6
Phvul.009G227400 Phaseolus vulgaris HOM05D004023 ORTHO05D004681 5.5e-74 282.0 315 54.6
BraA07t28423Z Brassica rapa HOM05D004023 ORTHO05D004681 9.3e-74 281.2 267 56.9
Cc06_g12120 Coffea canephora HOM05D004023 ORTHO05D004681 2.1e-73 280.0 304 51.3
MD15G1217100 Malus domestica HOM05D004023 ORTHO05D004681 2.1e-73 280.0 286 52.8
Ciclev10009135m.g Citrus clementina HOM05D004023 ORTHO05D004681 4.6e-73 278.9 307 53.7
VMungo1309G2832 Vigna mungo HOM05D004023 ORTHO05D004681 4.6e-73 278.9 321 54.2
BcaC06g35952 Brassica carinata HOM05D004023 ORTHO05D004681 6.0e-73 278.5 268 57.1
TWI63G1612 Tripterygium wilfordii HOM05D004023 ORTHO05D004681 6.0e-73 278.5 295 54.2
arahy.Tifrunner.gnm1.ann1.KW18SN Arachis hypogaea HOM05D004023 ORTHO05D004681 1.0e-72 277.7 313 50.2
Carub.0003s2716 Capsella rubella HOM05D004023 ORTHO05D004681 1.8e-72 276.9 271 57.2
Ca_23416_v3 Cicer arietinum L. HOM05D004023 ORTHO05D004681 2.3e-72 276.6 316 51.3
TWI34G0375 Tripterygium wilfordii HOM05D004023 ORTHO05D004681 3.0e-72 276.2 302 51.0
Glyma.09G069500 Glycine max HOM05D004023 ORTHO05D004681 5.1e-72 275.4 319 53.6
Sp3g24610 Schrenkiella parvula HOM05D004023 ORTHO05D004681 5.1e-72 275.4 269 57.2
Medtr2g041620 Medicago truncatula HOM05D004023 ORTHO05D004681 6.7e-72 275.0 311 50.5
TPR.G28584 Trifolium pratense HOM05D004023 ORTHO05D004681 6.7e-72 275.0 268 55.6
BolC7t41351H Brassica oleracea HOM05D004023 ORTHO05D004681 8.7e-72 274.6 268 56.3
CARHR103710 Cardamine hirsuta HOM05D004023 ORTHO05D004681 1.5e-71 273.9 270 56.3
arahy.Tifrunner.gnm1.ann1.KDYD97 Arachis hypogaea HOM05D004023 ORTHO05D004681 5.6e-71 271.9 289 53.3
arahy.Tifrunner.gnm1.ann1.XHC94G Arachis hypogaea HOM05D004023 ORTHO05D004681 5.6e-71 271.9 286 53.8
Lalb_Chr08g0232581 Lupinus albus HOM05D004023 ORTHO05D004681 5.6e-71 271.9 286 55.2
Glyma.15G177500 Glycine max HOM05D004023 ORTHO05D004681 3.7e-70 269.2 297 53.5
DCAR_031922 Daucus carota HOM05D004023 ORTHO05D004681 1.4e-69 267.3 303 52.1
Glyma.13G110200 Glycine max HOM05D004023 ORTHO05D004681 3.1e-69 266.2 252 56.0
Nitab4.5_0005767g0010 Nicotiana tabacum HOM05D004023 ORTHO05D004681 3.1e-69 266.2 300 48.7
Peaxi162Scf00554g00920 Petunia axillaris HOM05D004023 ORTHO05D004681 4.0e-69 265.8 258 55.8
Gorai.010G088100 Gossypium raimondii HOM05D004023 ORTHO05D004681 9.0e-69 264.6 277 54.9
AUR62025247 Chenopodium quinoa HOM05D004023 ORTHO05D004681 1.2e-68 264.2 234 59.8
Thhalv10002632m.g Eutrema salsugineum HOM05D004023 ORTHO05D004681 1.2e-68 264.2 268 56.0
AUR62028938 Chenopodium quinoa HOM05D004023 ORTHO05D004681 2.2e-67 260.0 234 58.5
PGSC0003DMG400027761 Solanum tuberosum HOM05D004023 ORTHO05D004681 1.4e-66 257.3 296 49.0
Psat1g134240 Pisum sativum HOM05D004023 ORTHO05D004681 5.5e-66 255.4 301 50.5
Aa31sc133G50 Aethionema arabicum HOM05D004023 ORTHO05D004681 9.3e-66 254.6 263 51.7
THA.LOC104826588 Tarenaya hassleriana HOM05D004023 ORTHO05D004681 9.3e-66 254.6 295 50.2
CDE05G3056 Ceratophyllum demersum HOM05D004023 ORTHO05D004681 1.3e-64 250.8 295 46.1
ECA240G3187 Erigeron canadensis HOM05D004023 ORTHO05D004681 1.3e-64 250.8 306 47.7
CsaV3_1G041000 Cucumis sativus L. HOM05D004023 ORTHO05D004681 3.0e-64 249.6 289 51.9
Lsat_1_v5_gn_7_35101 Lactuca sativa HOM05D004023 ORTHO05D004681 1.5e-63 247.3 291 49.5
Nitab4.5_0000024g0190 Nicotiana tabacum HOM05D004023 ORTHO05D004681 3.3e-63 246.1 281 48.4
Rhsim03G0227800 Rhododendron simsii HOM05D004023 ORTHO05D004681 1.6e-62 243.8 301 50.2
PGR142G0045 Punica granatum HOM05D004023 ORTHO05D004681 8.2e-62 241.5 304 49.3
DCAR_024747 Daucus carota HOM05D004023 ORTHO05D004681 1.4e-61 240.7 244 55.7
FAN26G1792 Fragaria x ananassa HOM05D004023 ORTHO05D004681 2.4e-61 240.0 285 48.4
Aqoxy7G01044 Aquilegia oxysepala HOM05D004023 ORTHO05D004681 5.3e-61 238.8 288 47.9
FAN28G2268 Fragaria x ananassa HOM05D004023 ORTHO05D004681 6.9e-61 238.4 259 52.1
Manes.03G040200 Manihot esculenta HOM05D004023 ORTHO05D004681 1.5e-60 237.3 305 47.2
FAN26G3281 Fragaria x ananassa HOM05D004023 ORTHO05D004681 3.4e-60 236.1 285 48.1
FAN23G1893 Fragaria x ananassa HOM05D004023 ORTHO05D004681 5.9e-60 235.3 259 51.4
HanXRQChr09g0237831 Helianthus annuus HOM05D004023 ORTHO05D004681 2.9e-59 233.0 267 50.9
FAN19G1115 Fragaria x ananassa HOM05D004023 ORTHO05D004681 3.8e-59 232.6 259 51.0
ClCG03G015110 Citrullus lanatus HOM05D004023 ORTHO05D004681 6.5e-59 231.9 324 44.8
Migut.L01563 Erythranthe guttata HOM05D004023 ORTHO05D004681 6.5e-59 231.9 306 46.4
FvH4_1g08620 Fragaria vesca HOM05D004023 ORTHO05D004681 8.5e-59 231.5 285 47.4
C07p09330 Brassica napus HOM05D004023 ORTHO05D004681 2.5e-58 229.9 230 55.2
vmacro06339 Vaccinium macrocarpon HOM05D004023 ORTHO05D004681 2.5e-58 229.9 273 51.6
RcHm_v2.0_Chr2g0094881 Rosa chinensis HOM05D004023 ORTHO05D004681 4.2e-58 229.2 290 46.6
Sed0007208 Sechium edule HOM05D004023 ORTHO05D004681 1.0e-56 224.6 245 51.0
Sopen05g021320 Solanum pennellii HOM05D004023 ORTHO05D004681 1.0e-56 224.6 290 45.9
Duzib168G1033 Durio zibethinus HOM05D004023 ORTHO05D004681 1.8e-56 223.8 295 46.8
TAR369G0443 Trochodendron aralioides HOM05D004023 ORTHO05D004681 3.9e-56 222.6 259 49.0
Lj4A912T25 Lonicera japonica HOM05D004023 ORTHO05D004681 6.7e-56 221.9 258 51.9
Solyc05g025890.3 Solanum lycopersicum HOM05D004023 ORTHO05D004681 8.7e-56 221.5 291 45.7
ATR0598G151 Amborella trichopoda HOM05D004023 ORTHO05D004681 2.8e-54 216.5 242 47.9
Phvul.003G131100 Phaseolus vulgaris HOM05D004023 ORTHO05D004681 5.3e-53 212.2 257 48.2
Hund08779 Selenicereus undatus HOM05D004023 ORTHO05D004681 1.5e-52 210.7 232 53.9
Cc01_g06740 Coffea canephora HOM05D004023 ORTHO05D004681 2.6e-52 209.9 228 50.4
Rhsim13G0202100 Rhododendron simsii HOM05D004023 ORTHO05D004681 5.9e-52 208.8 261 47.5
Actinidia24483 Actinidia chinensis HOM05D004023 ORTHO05D004681 1.3e-51 207.6 267 46.4
vmacro04098 Vaccinium macrocarpon HOM05D004023 ORTHO05D004681 1.3e-51 207.6 267 46.8
Migut.D00690 Erythranthe guttata HOM05D004023 ORTHO05D004681 5.0e-51 205.7 243 48.1
PSO339G3635 Papaver somniferum HOM05D004023 ORTHO05D004681 5.0e-51 205.7 273 46.5
MSTRG.18474 Avicennia marina HOM05D004023 ORTHO05D004681 6.5e-51 205.3 267 44.9
SEGI_14760 Sequoiadendron giganteum HOM05D004023 ORTHO05D004681 1.4e-50 204.1 257 47.9
Sc18g0002510 Simmondsia chinensis HOM05D004023 ORTHO05D004681 2.5e-50 203.4 239 48.5
Hma1.2p1_1711F.1_g298750 Hydrangea macrophylla HOM05D004023 ORTHO05D004681 3.2e-50 203.0 258 46.9
Eucgr.J00649 Eucalyptus grandis HOM05D004023 ORTHO05D004681 1.2e-49 201.1 241 47.3
GSVIVG01037415001 Vitis vinifera HOM05D004023 ORTHO05D004681 1.2e-49 201.1 272 45.2
MBI13_g41748_MAGBIO Magnolia biondii HOM05D004023 ORTHO05D004681 1.6e-49 200.7 232 50.4
PGR119G0815 Punica granatum HOM05D004023 ORTHO05D004681 1.6e-49 200.7 241 47.7
Aqoxy1G00042 Aquilegia oxysepala HOM05D004023 ORTHO05D004681 3.6e-49 199.5 235 50.2
PSO384G4677 Papaver somniferum HOM05D004023 ORTHO05D004681 3.6e-49 199.5 272 46.3
CDE05G0867 Ceratophyllum demersum HOM05D004023 ORTHO05D004681 4.6e-49 199.1 200 50.0
MBI13_g42818_MAGBIO Magnolia biondii HOM05D004023 ORTHO05D004681 1.8e-48 197.2 234 46.2
Gohir.D06G075200 Gossypium hirsutum HOM05D004023 ORTHO05D004681 3.9e-48 196.1 226 52.2
Gorai.013G224500 Gossypium raimondii HOM05D004023 ORTHO05D004681 5.1e-48 195.7 302 41.1
Ah.03g147260 Amaranthus hybridus HOM05D004023 ORTHO05D004681 8.8e-48 194.9 305 41.0
Gohir.D13G196385 Gossypium hirsutum HOM05D004023 ORTHO05D004681 8.8e-48 194.9 302 40.7
ATR1096G005 Amborella trichopoda HOM05D004023 ORTHO05D004681 2.0e-47 193.7 285 42.1
Gohir.A13G191000 Gossypium hirsutum HOM05D004023 ORTHO05D004681 2.0e-47 193.7 302 40.7
HPP92_013291 Vanilla planifolia HOM05D004023 ORTHO05D004681 4.4e-47 192.6 232 46.6
AUR62003487 Chenopodium quinoa HOM05D004023 ORTHO05D004681 3.7e-46 189.5 256 44.9
DCAR_006328 Daucus carota HOM05D004023 ORTHO05D004681 3.7e-46 189.5 235 47.7
AUR62017796 Chenopodium quinoa HOM05D004023 ORTHO05D004681 1.1e-45 188.0 303 39.6
Hund12723 Selenicereus undatus HOM05D004023 ORTHO05D004681 2.4e-45 186.8 282 42.2
EL10Ac8g19063 Beta vulgaris HOM05D004023 ORTHO05D004681 3.1e-45 186.4 301 41.9
CAN.G484.8 Capsicum annuum HOM05D004023 ORTHO05D004681 9.1e-45 184.9 267 43.1
Solyc12g099940.2 Solanum lycopersicum HOM05D004023 ORTHO05D004681 1.2e-44 184.5 267 42.7
Sopen12g034560 Solanum pennellii HOM05D004023 ORTHO05D004681 1.5e-44 184.1 267 42.7
PGSC0003DMG400004653 Solanum tuberosum HOM05D004023 ORTHO05D004681 1.7e-43 180.6 267 41.9
Os03g0177000 Oryza sativa ssp. japonica HOM05D004023 ORTHO05D004681 1.2e-41 174.5 257 39.7
Nitab4.5_0001925g0260 Nicotiana tabacum HOM05D004023 ORTHO05D004681 2.1e-41 173.7 245 44.1
HanXRQChr14g0431991 Helianthus annuus HOM05D004023 ORTHO05D004681 1.8e-40 170.6 228 44.7
Lsat_1_v5_gn_2_38101 Lactuca sativa HOM05D004023 ORTHO05D004681 2.3e-40 170.2 227 44.1
SGA_v2.0_scaffold29G12111 Striga asiatica HOM05D004023 ORTHO05D004681 3.3e-39 166.4 337 35.6
Zm00001eb401920 Zea mays HOM05D004023 ORTHO05D004681 5.7e-39 165.6 220 41.8
Nn8g38657 Nelumbo nucifera HOM05D004023 ORTHO05D004681 2.8e-38 163.3 164 54.3
Peaxi162Scf00062g00920 Petunia axillaris HOM05D004023 ORTHO05D004681 1.1e-37 161.4 335 34.9
Glyma.17G049500 Glycine max HOM05D004023 ORTHO05D004681 1.4e-37 161.0 204 47.5
Cpa.g.sc28.45 Carica papaya HOM05D004023 ORTHO05D004681 2.0e-36 157.1 245 42.9
EL10Ac6g15385 Beta vulgaris HOM05D004023 ORTHO05D004681 2.6e-36 156.8 307 37.5
Oeu020552.2 Olea europaea HOM05D004023 ORTHO05D004681 3.5e-36 156.4 116 67.2
unitig_0.g313 Utricularia gibba HOM05D004023 ORTHO05D004681 1.5e-34 151.0 227 41.4
unitig_60.g25636 Utricularia gibba HOM05D004023 ORTHO05D004681 1.9e-34 150.6 248 37.9
SalBow5G0641 Salvia bowleyana HOM05D004023 ORTHO05D004681 2.5e-34 150.2 215 40.5
PSO063G3828 Papaver somniferum HOM05D004023 ORTHO05D004681 3.2e-34 149.8 218 39.0
arahy.Tifrunner.gnm1.ann1.NU1P8G Arachis hypogaea HOM05D004023 ORTHO05D004681 2.7e-33 146.7 259 36.7
MELO3C015518.2 Cucumis melo HOM05D004023 ORTHO05D004681 5.2e-32 142.5 170 47.6
Sed0008804 Sechium edule HOM05D004023 ORTHO05D004681 4.4e-31 139.4 255 35.7
Zm00001eb401960 Zea mays HOM05D004023 ORTHO05D004681 3.7e-30 136.3 196 40.8
Mapoly0023s0080 Marchantia polymorpha HOM05D004023 ORTHO05D004681 1.4e-29 134.4 233 37.8
PSO339G4574 Papaver somniferum HOM05D004023 ORTHO05D004681 1.2e-28 131.3 210 39.0
Nitab4.5_0011805g0030 Nicotiana tabacum HOM05D004023 ORTHO05D004681 2.7e-28 130.2 257 35.8
PSO384G0928 Papaver somniferum HOM05D004023 ORTHO05D004681 3.5e-28 129.8 243 35.4
PSO384G3720 Papaver somniferum HOM05D004023 ORTHO05D004681 3.5e-28 129.8 243 35.4
Lj2C939G1 Lonicera japonica HOM05D004023 ORTHO05D004681 1.7e-27 127.5 311 32.8
AagrBONN_evm.TU.Sc2ySwM_117.2238 Anthoceros agrestis HOM05D004023 ORTHO05D004681 7.2e-26 122.1 223 35.9
Nn7g37124 Nelumbo nucifera HOM05D004023 ORTHO05D004681 2.1e-25 120.6 172 43.0
SalBow6G6388 Salvia bowleyana HOM05D004023 ORTHO05D004681 1.0e-24 118.2 156 44.2
Lj2C946G11 Lonicera japonica HOM05D004023 ORTHO05D004681 3.7e-22 109.8 238 35.3
Actinidia07003 Actinidia chinensis HOM05D004023 ORTHO05D004681 4.1e-21 106.3 206 37.9
SMO200G0269 Selaginella moellendorffii HOM05D004023 ORTHO05D004681 1.0e-19 101.7 202 32.2
CSS0000978 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 1.7e-19 100.9 224 34.8
Pp3c12_9920 Physcomitrium patens HOM05D004023 ORTHO05D004681 7.2e-18 95.5 219 32.9
Oeu013106.1 Olea europaea HOM05D004023 ORTHO05D004681 1.8e-16 90.9 109 47.7
PSO339G0741 Papaver somniferum HOM05D004023 ORTHO05D004681 5.2e-16 89.4 180 33.3
Lalb_Chr12g0200121 Lupinus albus HOM05D004023 ORTHO05D004681 6.8e-16 89.0 106 51.9
PSO478G2869 Papaver somniferum HOM05D004023 ORTHO05D004681 3.7e-14 83.2 114 41.2
Zm00001eb408770 Zea mays HOM05D004023 ORTHO05D004681 1.4e-13 81.3 107 42.1
PSO339G2030 Papaver somniferum HOM05D004023 ORTHO05D004681 5.4e-13 79.3 178 32.0
Glyma.08G144367 Glycine max HOM05D004023 ORTHO05D004681 4.5e-12 76.3 78 50.0
Lalb_Chr12g0200111 Lupinus albus HOM05D004023 ORTHO05D004681 3.8e-11 73.2 50 72.0
Cre02.g084550 Chlamydomonas reinhardtii HOM05D005733 ORTHO05D007442 4.3e-10 69.7 99 40.4
Mapoly0019s0038 Marchantia polymorpha HOM05D005733 ORTHO05D007442 2.3e-08 63.9 97 38.1
PRCOL_00005114 Prasinoderma coloniale HOM05D004023 ORTHO05D004681 4.9e-06 56.2 61 47.5


User provided reference genes

Program Settings