Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047719 Camellia sinensis var. sinensis HOM05D007003 ORTHO05D008499 1.5e-203 712.6 363 100.0
Dinv40746 Davidia involucrata HOM05D007003 ORTHO05D008499 2.9e-125 452.6 361 66.8
vmacro11731 Vaccinium macrocarpon HOM05D007003 ORTHO05D008499 1.2e-112 410.6 356 63.5
CiPaw.12G128900 Carya illinoinensis HOM05D007003 ORTHO05D008499 6.4e-109 398.3 372 59.9
Actinidia36944 Actinidia chinensis HOM05D001273 ORTHO05D000023 1.3e-106 390.6 362 61.0
Atru.chr2.3373 Acer truncatum HOM05D007003 ORTHO05D008499 5.8e-102 375.2 390 56.4
Rhsim06G0216400 Rhododendron simsii HOM05D000561 ORTHO05D000514 1.3e-101 374.0 351 61.5
GSVIVG01037627001 Vitis vinifera HOM05D007003 ORTHO05D008499 1.1e-100 370.9 365 58.9
MD11G1220900 Malus domestica HOM05D001273 ORTHO05D008499 7.1e-100 368.2 428 50.9
Cfa020358 Carpinus fangiana HOM05D007003 ORTHO05D008499 2.7e-99 366.3 438 49.3
TAR627G0793 Trochodendron aralioides HOM05D007003 ORTHO05D008499 3.5e-99 365.9 407 52.1
Prupe.4G211300 Prunus persica HOM05D007003 ORTHO05D008499 4.6e-99 365.5 431 51.3
Haze_09661 Corylus avellana HOM05D007003 ORTHO05D008499 6.0e-99 365.2 446 47.8
Ciclev10008359m.g Citrus clementina HOM05D007003 ORTHO05D008499 1.9e-97 360.1 397 53.4
Lalb_Chr04g0248491 Lupinus albus HOM05D007003 ORTHO05D008499 2.5e-97 359.8 370 54.9
RcHm_v2.0_Chr5g0039141 Rosa chinensis HOM05D007003 ORTHO05D008499 2.5e-97 359.8 432 49.5
Cpa.g.sc97.17 Carica papaya HOM05D007003 ORTHO05D008499 9.6e-97 357.8 441 48.3
Gohir.A04G018400 Gossypium hirsutum HOM05D007003 ORTHO05D008499 1.3e-96 357.5 364 55.2
Cc05_g13800 Coffea canephora HOM05D007003 ORTHO05D008499 3.1e-95 352.8 362 56.1
Gohir.D05G367600 Gossypium hirsutum HOM05D007003 ORTHO05D008499 3.1e-95 352.8 364 54.4
Gorai.009G435200 Gossypium raimondii HOM05D007003 ORTHO05D008499 9.0e-95 351.3 364 54.1
Medtr5g092280 Medicago truncatula HOM05D007003 ORTHO05D008499 1.2e-94 350.9 370 52.4
Thecc.07G042400 Theobroma cacao HOM05D007003 ORTHO05D008499 1.2e-94 350.9 429 49.4
Manes.03G124400 Manihot esculenta HOM05D007003 ORTHO05D008499 3.4e-94 349.4 357 54.3
Oeu007586.1 Olea europaea HOM05D007003 ORTHO05D008499 4.5e-94 349.0 355 54.1
Nitab4.5_0001913g0010 Nicotiana tabacum HOM05D007003 ORTHO05D008499 9.9e-94 347.8 360 54.7
Nn1g03566 Nelumbo nucifera HOM05D007003 ORTHO05D008499 3.8e-93 345.9 443 47.0
Glyma.14G024800 Glycine max HOM05D007003 ORTHO05D008499 4.9e-93 345.5 381 53.3
QL03p009927 Quercus lobata HOM05D007003 ORTHO05D008499 4.9e-93 345.5 456 46.9
QL08p011145 Quercus lobata HOM05D007003 ORTHO05D008499 3.2e-92 342.8 456 46.7
Sabra16G0288900 Salix brachista HOM05D007003 ORTHO05D008499 5.4e-92 342.0 369 51.5
Potri.001G423900 Populus trichocarpa HOM05D007003 ORTHO05D008499 7.1e-92 341.7 369 50.9
EL10Ac4g07838 Beta vulgaris HOM05D007003 ORTHO05D008499 2.1e-91 340.1 384 49.7
FvH4_3g22471 Fragaria vesca HOM05D007003 ORTHO05D008499 2.1e-91 340.1 426 48.6
FAN21G0080 Fragaria x ananassa HOM05D007003 ORTHO05D008499 1.3e-90 337.4 424 48.8
VMungo0647G1301 Vigna mungo HOM05D007003 ORTHO05D008499 2.3e-90 336.7 388 51.8
AUR62015746 Chenopodium quinoa HOM05D007003 ORTHO05D008499 3.0e-90 336.3 393 48.3
AUR62020466 Chenopodium quinoa HOM05D007003 ORTHO05D008499 6.7e-90 335.1 393 48.1
Eucgr.F00779 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.5e-89 333.2 368 50.5
CsaV3_3G044430 Cucumis sativus L. HOM05D007003 ORTHO05D008499 3.3e-89 332.8 359 51.5
MELO3C018208.2 Cucumis melo HOM05D007003 ORTHO05D008499 4.3e-89 332.4 355 51.5
Nitab4.5_0003812g0060 Nicotiana tabacum HOM05D007003 ORTHO05D008499 4.3e-89 332.4 358 53.9
Sopen07g032680 Solanum pennellii HOM05D007003 ORTHO05D008499 9.6e-89 331.3 363 53.2
Migut.M01775 Erythranthe guttata HOM05D007003 ORTHO05D008499 1.3e-88 330.9 361 50.4
CANSAT21G1622 Cannabis sativa HOM05D007003 ORTHO05D008499 2.8e-88 329.7 436 46.1
Solyc07g064480.1 Solanum lycopersicum HOM05D007003 ORTHO05D008499 2.8e-88 329.7 373 52.5
PGSC0003DMG400042605 Solanum tuberosum HOM05D007003 ORTHO05D008499 4.8e-88 328.9 367 52.9
DCAR_022556 Daucus carota HOM05D007003 ORTHO05D008499 5.3e-87 325.5 354 52.5
Phvul.008G266200 Phaseolus vulgaris HOM05D007003 ORTHO05D008499 1.2e-86 324.3 388 51.0
Ah.04g165820 Amaranthus hybridus HOM05D007003 ORTHO05D008499 2.0e-86 323.6 381 49.6
LjContig00272g0003747 Lotus japonicus HOM05D007003 ORTHO05D008499 2.6e-86 323.2 381 49.3
arahy.Tifrunner.gnm1.ann1.422Z41 Arachis hypogaea HOM05D007003 ORTHO05D008499 4.5e-86 322.4 418 49.3
Cfa020360 Carpinus fangiana HOM05D007003 ORTHO05D008499 9.9e-86 321.2 425 46.6
Peaxi162Scf00964g00113 Petunia axillaris HOM05D007003 ORTHO05D008499 2.9e-85 319.7 360 52.2
Lj1P870T43 Lonicera japonica HOM05D007003 ORTHO05D008499 4.9e-85 318.9 360 53.3
Thhalv10013739m.g Eutrema salsugineum HOM05D007003 ORTHO05D008499 6.4e-85 318.5 369 50.9
Duzib213G0769 Durio zibethinus HOM05D007003 ORTHO05D008499 1.4e-84 317.4 489 44.2
Sed0008518 Sechium edule HOM05D007003 ORTHO05D008499 1.9e-84 317.0 362 50.0
AL8G30340 Arabidopsis lyrata HOM05D007003 ORTHO05D008499 9.3e-84 314.7 370 49.5
arahy.Tifrunner.gnm1.ann1.6A6QM9 Arachis hypogaea HOM05D007003 ORTHO05D008499 9.3e-84 314.7 428 48.1
CARHR268220 Cardamine hirsuta HOM05D007003 ORTHO05D008499 1.3e-82 310.8 370 50.8
AT5G54880 Arabidopsis thaliana HOM05D007003 ORTHO05D008499 1.8e-82 310.5 368 49.5
PGR119G0071 Punica granatum HOM05D007003 ORTHO05D008499 9.6e-81 304.7 376 48.4
THA.LOC104817663 Tarenaya hassleriana HOM05D007003 ORTHO05D008499 1.6e-80 303.9 382 47.9
Eucgr.F00955 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.8e-80 303.1 352 49.7
Sp6g16850 Schrenkiella parvula HOM05D007003 ORTHO05D008499 6.9e-79 298.5 370 50.5
TPR.G22251 Trifolium pratense HOM05D007003 ORTHO05D008499 9.0e-79 298.1 360 46.9
Lsat_1_v5_gn_5_6061 Lactuca sativa HOM05D007003 ORTHO05D008499 2.6e-78 296.6 359 49.9
Aa31LG3G10810 Aethionema arabicum HOM05D007003 ORTHO05D008499 3.4e-78 296.2 362 48.3
BcaB05g22167 Brassica carinata HOM05D007003 ORTHO05D008499 1.0e-77 294.7 361 50.4
BolC2t07756H Brassica oleracea HOM05D001404 ORTHO05D002309 1.0e-77 294.7 357 49.9
C02p16580 Brassica napus HOM05D001404 ORTHO05D002309 1.7e-77 293.9 357 50.1
TWI39G0907 Tripterygium wilfordii HOM05D007003 ORTHO05D008499 2.9e-77 293.1 362 48.1
ECA246G4814 Erigeron canadensis HOM05D001273 ORTHO05D000023 1.1e-76 291.2 359 49.6
PSO675G0160 Papaver somniferum HOM05D007003 ORTHO05D008499 1.4e-76 290.8 357 48.2
A02p10000 Brassica napus HOM05D001404 ORTHO05D008499 2.5e-76 290.0 356 49.7
BraA02t06064Z Brassica rapa HOM05D001404 ORTHO05D002309 2.5e-76 290.0 356 49.7
Eucgr.F00790 Eucalyptus grandis HOM05D007003 ORTHO05D008499 4.2e-76 289.3 359 48.5
ATR0752G213 Amborella trichopoda HOM05D007003 ORTHO05D008499 5.1e-74 282.3 433 43.9
HPP92_012320 Vanilla planifolia HOM05D007003 ORTHO05D008499 8.7e-74 281.6 369 44.2
HPP92_012396 Vanilla planifolia HOM05D007003 ORTHO05D008499 1.9e-73 280.4 369 44.2
Psat2g013360 Pisum sativum HOM05D007003 ORTHO05D008499 1.1e-71 274.6 354 48.0
Eucgr.F00922 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.2e-70 271.2 365 45.5
Aqoxy7G03837 Aquilegia oxysepala HOM05D007003 ORTHO05D008499 5.9e-70 268.9 389 43.2
Eucgr.L01323 Eucalyptus grandis HOM05D007003 ORTHO05D008499 5.0e-69 265.8 339 47.5
unitig_578.g16000 Utricularia gibba HOM05D007003 ORTHO05D008499 6.5e-69 265.4 356 47.5
SGA_v2.0_scaffold424G51477 Striga asiatica HOM05D007003 ORTHO05D008499 5.5e-68 262.3 370 45.1
Actinidia05100 Actinidia chinensis HOM05D007003 ORTHO05D008499 7.2e-68 261.9 204 69.1
Eucgr.F00879 Eucalyptus grandis HOM05D007003 ORTHO05D008499 7.2e-68 261.9 360 45.3
MBI02_g19288_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 2.7e-67 260.0 560 36.1
Sc16g0006140 Simmondsia chinensis HOM05D007003 ORTHO05D008499 1.4e-66 257.7 361 41.3
Eucgr.F00913 Eucalyptus grandis HOM05D007003 ORTHO05D008499 4.8e-64 249.2 346 43.9
Ca_26481_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 1.8e-63 247.3 196 62.8
SalBow8G3099 Salvia bowleyana HOM05D007003 ORTHO05D008499 3.1e-63 246.5 199 65.3
Eucgr.F00928 Eucalyptus grandis HOM05D007003 ORTHO05D008499 5.5e-60 235.7 312 45.2
Eucgr.F00897 Eucalyptus grandis HOM05D007003 ORTHO05D008499 4.7e-59 232.6 303 45.2
MBI02_g22102_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 7.9e-59 231.9 251 52.2
Zm00001eb219850 Zea mays HOM05D007003 ORTHO05D008499 6.7e-58 228.8 481 33.7
Os03g0568600 Oryza sativa ssp. japonica HOM05D007003 ORTHO05D008499 4.8e-56 222.6 480 33.3
Carub.0008s1518 Capsella rubella HOM05D007003 ORTHO05D008499 7.0e-55 218.8 274 48.2
TPR.G17434 Trifolium pratense HOM05D007003 ORTHO05D008499 7.7e-54 215.3 195 54.4
CDE11G0477 Ceratophyllum demersum HOM05D007003 ORTHO05D008499 1.2e-46 191.4 305 37.4
BcaC03g14277 Brassica carinata HOM05D007003 ORTHO05D008499 2.6e-46 190.3 157 63.1
Zm00001eb026290 Zea mays HOM05D007003 ORTHO05D008499 5.0e-45 186.0 150 56.7
SEGI_36701 Sequoiadendron giganteum HOM05D007003 ORTHO05D008499 1.2e-43 181.4 353 34.8
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 1.8e-39 167.5 254 42.1
AagrBONN_evm.TU.Sc2ySwM_362.2079 Anthoceros agrestis HOM05D007003 ORTHO05D008499 2.2e-32 144.1 354 33.3
Pp3c4_4830 Physcomitrium patens HOM05D007003 ORTHO05D008499 9.1e-31 138.7 353 31.2
Ca_03331_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 1.6e-30 137.9 142 52.1
CAN.G337.121 Capsicum annuum HOM05D007003 ORTHO05D008499 3.8e-29 133.3 278 37.1
MD03G1204100 Malus domestica HOM05D007003 ORTHO05D008499 3.3e-28 130.2 128 57.8
TPR.G1180 Trifolium pratense HOM05D007003 ORTHO05D008499 3.6e-27 126.7 192 43.2
CAN.G337.122 Capsicum annuum HOM05D007003 ORTHO05D008499 1.4e-26 124.8 77 77.9
Mapoly0032s0131 Marchantia polymorpha HOM05D007003 ORTHO05D008499 6.8e-26 122.5 391 29.2
MBI02_g22101_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D002463 2.4e-23 114.0 88 65.9
SMO339G0013 Selaginella moellendorffii HOM05D007003 ORTHO05D008499 1.6e-22 111.3 344 29.1
TPR.G1231 Trifolium pratense HOM05D007003 ORTHO05D008499 4.3e-20 103.2 78 61.5
Medtr0590s0020 Medicago truncatula HOM05D007003 ORTHO05D263438 1.8e-18 97.8 158 36.1
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 2.0e-17 94.4 82 51.2
Actinidia05099 Actinidia chinensis HOM05D001273 ORTHO05D000023 6.4e-16 89.4 60 70.0
ClCG05G014280 Citrullus lanatus HOM05D007003 ORTHO05D008499 9.2e-15 85.5 55 69.1
PSO384G4400 Papaver somniferum HOM05D007273 ORTHO05D009230 2.1e-06 57.8 133 30.8
Haze_06347 Corylus avellana HOM05D007003 ORTHO05D008499 6.0e-06 56.2 42 64.3


User provided reference genes

Program Settings