Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047718 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 2.5e-54 215.3 119 100.0
CSS0046994 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 1.5e-51 206.1 119 90.8
CSS0007298 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 4.2e-33 144.8 120 68.3
Dinv22175 Davidia involucrata HOM05D000545 ORTHO05D000539 1.0e-31 140.2 120 64.2
Actinidia23974 Actinidia chinensis HOM05D003595 ORTHO05D004132 3.0e-31 138.7 123 61.8
QL01p004672 Quercus lobata HOM05D003595 ORTHO05D004132 1.5e-30 136.3 126 59.5
CiPaw.14G118800 Carya illinoinensis HOM05D003595 ORTHO05D004132 3.3e-30 135.2 125 59.2
Manes.14G003000 Manihot esculenta HOM05D003595 ORTHO05D004132 1.6e-29 132.9 130 58.5
Cfa009775 Carpinus fangiana HOM05D003595 ORTHO05D004132 2.8e-29 132.1 122 59.0
Haze_23141 Corylus avellana HOM05D003595 ORTHO05D004132 4.8e-29 131.3 122 57.4
Manes.06G164000 Manihot esculenta HOM05D003595 ORTHO05D004132 6.2e-29 131.0 134 56.7
Thecc.09G234200 Theobroma cacao HOM05D003595 ORTHO05D004132 2.0e-27 125.9 132 59.8
Duzib168G1914 Durio zibethinus HOM05D003595 ORTHO05D004132 3.4e-27 125.2 128 60.2
Gohir.A09G114100 Gossypium hirsutum HOM05D003595 ORTHO05D004132 3.4e-27 125.2 123 57.7
Gohir.D09G110700 Gossypium hirsutum HOM05D003595 ORTHO05D004132 3.4e-27 125.2 123 57.7
Actinidia06343 Actinidia chinensis HOM05D003595 ORTHO05D004132 1.0e-26 123.6 126 54.0
Gorai.006G128400 Gossypium raimondii HOM05D003595 ORTHO05D004132 1.0e-26 123.6 123 56.9
TAR633G0913 Trochodendron aralioides HOM05D003595 ORTHO05D004132 1.0e-26 123.6 125 55.2
Sabra16G0157600 Salix brachista HOM05D003595 ORTHO05D004132 2.9e-26 122.1 134 53.0
TAR636G3263 Trochodendron aralioides HOM05D003595 ORTHO05D004132 3.8e-26 121.7 125 56.8
Potri.001G257700 Populus trichocarpa HOM05D003595 ORTHO05D004132 5.0e-26 121.3 130 53.1
CiPaw.13G160700 Carya illinoinensis HOM05D003595 ORTHO05D004132 9.3e-25 117.1 131 53.4
Eucgr.B03689 Eucalyptus grandis HOM05D003595 ORTHO05D004132 4.6e-24 114.8 123 52.0
TAR623G0789 Trochodendron aralioides HOM05D003595 ORTHO05D004132 6.1e-24 114.4 69 75.4
TAR623G1528 Trochodendron aralioides HOM05D003595 ORTHO05D004132 6.1e-24 114.4 69 75.4
Glyma.08G335700 Glycine max HOM05D003595 ORTHO05D004132 3.0e-23 112.1 66 78.8
Prupe.4G249800 Prunus persica HOM05D003595 ORTHO05D004132 3.9e-23 111.7 131 50.4
GSVIVG01025255001 Vitis vinifera HOM05D003595 ORTHO05D004132 3.9e-23 111.7 116 53.4
Glyma.18G070800 Glycine max HOM05D003595 ORTHO05D004132 6.7e-23 110.9 63 82.5
Gohir.A05G069500 Gossypium hirsutum HOM05D003595 ORTHO05D004132 6.7e-23 110.9 130 58.5
Gohir.D05G072400 Gossypium hirsutum HOM05D003595 ORTHO05D004132 6.7e-23 110.9 130 58.5
Gorai.009G073400 Gossypium raimondii HOM05D003595 ORTHO05D004132 6.7e-23 110.9 130 58.5
Phvul.006G062400 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 1.1e-22 110.2 66 77.3
VMungo0540G1156 Vigna mungo HOM05D003595 ORTHO05D004132 1.1e-22 110.2 66 77.3
Nn7g36211 Nelumbo nucifera HOM05D003595 ORTHO05D004132 1.9e-22 109.4 127 47.2
MSTRG.18428 Avicennia marina HOM05D003595 ORTHO05D004132 2.5e-22 109.0 136 49.3
Nn2g15359 Nelumbo nucifera HOM05D003595 ORTHO05D004132 4.3e-22 108.2 128 50.0
Atru.chr3.2713 Acer truncatum HOM05D003595 ORTHO05D004132 9.7e-22 107.1 65 78.5
Potri.009G053000 Populus trichocarpa HOM05D003595 ORTHO05D004132 1.3e-21 106.7 125 49.6
Phvul.008G283300 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 2.8e-21 105.5 64 75.0
Lj6g0013857 Lotus japonicus HOM05D003595 ORTHO05D004132 6.3e-21 104.4 59 83.1
Oeu025870.1 Olea europaea HOM05D003595 ORTHO05D004132 1.1e-20 103.6 135 47.4
Rhsim01G0191900 Rhododendron simsii HOM05D003595 ORTHO05D004132 1.1e-20 103.6 64 73.4
TWI32G0089 Tripterygium wilfordii HOM05D003595 ORTHO05D004132 1.1e-20 103.6 121 50.4
Cc00_g16730 Coffea canephora HOM05D003595 ORTHO05D004132 2.4e-20 102.4 116 50.9
RcHm_v2.0_Chr5g0052211 Rosa chinensis HOM05D003595 ORTHO05D004132 4.1e-20 101.7 66 71.2
Dinv18068 Davidia involucrata HOM05D003595 ORTHO05D004132 5.3e-20 101.3 59 76.3
Glyma.19G141300 Glycine max HOM05D003595 ORTHO05D004132 5.3e-20 101.3 62 71.0
Ca_14877_v3 Cicer arietinum L. HOM05D003595 ORTHO05D004132 6.9e-20 100.9 135 43.7
CANSAT54G2715 Cannabis sativa HOM05D003595 ORTHO05D004132 9.0e-20 100.5 64 73.4
LjContig00081g0018996 Lotus japonicus HOM05D003595 ORTHO05D004132 1.5e-19 99.8 133 54.1
MSTRG.21376 Avicennia marina HOM05D003595 ORTHO05D004132 3.4e-19 98.6 132 45.5
MELO3C014591.2 Cucumis melo HOM05D003595 ORTHO05D004132 3.4e-19 98.6 113 46.0
CsaV3_4G024290 Cucumis sativus L. HOM05D003595 ORTHO05D004132 3.4e-19 98.6 114 47.4
FAN16G0889 Fragaria x ananassa HOM05D003595 ORTHO05D004132 3.4e-19 98.6 66 68.2
Glyma.02G303900 Glycine max HOM05D003595 ORTHO05D004132 3.4e-19 98.6 126 49.2
FvH4_3g28800 Fragaria vesca HOM05D003595 ORTHO05D004132 4.5e-19 98.2 66 68.2
FAN21G3881 Fragaria x ananassa HOM05D003595 ORTHO05D004132 4.5e-19 98.2 66 68.2
FAN25G1008 Fragaria x ananassa HOM05D003595 ORTHO05D004132 4.5e-19 98.2 66 68.2
Sed0003787 Sechium edule HOM05D003595 ORTHO05D004132 4.5e-19 98.2 121 47.1
Cpa.g.sc84.51 Carica papaya HOM05D003595 ORTHO05D004132 1.0e-18 97.1 126 53.2
Lalb_Chr18g0050501 Lupinus albus HOM05D003595 ORTHO05D004132 1.0e-18 97.1 67 71.6
Lsat_1_v5_gn_6_48040 Lactuca sativa HOM05D003595 ORTHO05D004132 1.3e-18 96.7 109 45.9
arahy.Tifrunner.gnm1.ann1.ST54C5 Arachis hypogaea HOM05D003595 ORTHO05D004132 1.7e-18 96.3 56 76.8
Cfa016846 Carpinus fangiana HOM05D003595 ORTHO05D004132 1.7e-18 96.3 68 66.2
Potri.016G053900 Populus trichocarpa HOM05D003595 ORTHO05D004132 1.7e-18 96.3 118 45.8
TPR.G30109 Trifolium pratense HOM05D003595 ORTHO05D004132 1.7e-18 96.3 58 74.1
FAN11G1213 Fragaria x ananassa HOM05D003595 ORTHO05D004132 2.2e-18 95.9 66 66.7
Medtr3g061570 Medicago truncatula HOM05D003595 ORTHO05D004132 2.9e-18 95.5 143 42.0
Sed0023013 Sechium edule HOM05D003595 ORTHO05D004132 2.9e-18 95.5 65 66.2
VMungo1383G3074 Vigna mungo HOM05D003595 ORTHO05D004132 2.9e-18 95.5 68 64.7
Oeu063323.1 Olea europaea HOM05D003595 ORTHO05D004132 3.8e-18 95.1 132 43.2
MSTRG.17593 Avicennia marina HOM05D003595 ORTHO05D004132 5.0e-18 94.7 116 48.3
MBI02_g05660_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 5.0e-18 94.7 108 45.4
MD11G1192700 Malus domestica HOM05D003595 ORTHO05D004132 8.5e-18 94.0 138 47.1
Migut.N02319 Erythranthe guttata HOM05D003595 ORTHO05D004132 1.1e-17 93.6 62 67.7
MD03G1174700 Malus domestica HOM05D003595 ORTHO05D004132 1.4e-17 93.2 138 47.8
Lalb_Chr15g0082551 Lupinus albus HOM05D003595 ORTHO05D004132 1.9e-17 92.8 138 44.2
Sopen11g025480 Solanum pennellii HOM05D003595 ORTHO05D004132 1.9e-17 92.8 67 67.2
ClCG02G023190 Citrullus lanatus HOM05D003595 ORTHO05D004132 4.2e-17 91.7 54 75.9
Nitab4.5_0002741g0180 Nicotiana tabacum HOM05D003595 ORTHO05D004132 5.5e-17 91.3 62 66.1
Sabra06G0038000 Salix brachista HOM05D003595 ORTHO05D004132 5.5e-17 91.3 119 45.4
Thhalv10011876m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 7.2e-17 90.9 113 51.3
Sabra16G0057000 Salix brachista HOM05D003595 ORTHO05D004132 9.4e-17 90.5 115 41.7
THA.LOC104817909 Tarenaya hassleriana HOM05D003595 ORTHO05D004132 1.2e-16 90.1 53 71.7
Potri.006G053600 Populus trichocarpa HOM05D003595 ORTHO05D004132 1.6e-16 89.7 119 44.5
PGSC0003DMG400007365 Solanum tuberosum HOM05D003595 ORTHO05D004132 2.1e-16 89.4 76 56.6
PGR102G2999 Punica granatum HOM05D003595 ORTHO05D004132 2.7e-16 89.0 136 44.9
Phvul.007G253900 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 3.6e-16 88.6 56 66.1
Glyma.03G138300 Glycine max HOM05D003595 ORTHO05D004132 4.6e-16 88.2 63 63.5
Actinidia24526 Actinidia chinensis HOM05D003595 ORTHO05D004132 7.9e-16 87.4 109 41.3
ClCG03G013230 Citrullus lanatus HOM05D003595 ORTHO05D004132 7.9e-16 87.4 53 73.6
AL1G59180 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 1.0e-15 87.0 113 42.5
SGA_v2.0_scaffold42G16100 Striga asiatica HOM05D003595 ORTHO05D004132 1.0e-15 87.0 122 44.3
TPR.G1275 Trifolium pratense HOM05D003595 ORTHO05D004132 1.0e-15 87.0 97 53.6
VMungo0720G0045 Vigna mungo HOM05D003595 ORTHO05D004132 1.0e-15 87.0 56 64.3
Gohir.D07G127800 Gossypium hirsutum HOM05D003595 ORTHO05D004132 2.3e-15 85.9 113 46.0
MBI04_g36072_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 2.3e-15 85.9 118 44.9
Lalb_Chr20g0110801 Lupinus albus HOM05D003595 ORTHO05D004132 3.9e-15 85.1 65 63.1
Phvul.001G135700 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 3.9e-15 85.1 65 61.5
Glyma.02G182300 Glycine max HOM05D003595 ORTHO05D004132 5.1e-15 84.7 62 64.5
HanXRQChr02g0056211 Helianthus annuus HOM05D003595 ORTHO05D004132 5.1e-15 84.7 110 44.5
Actinidia09350 Actinidia chinensis HOM05D003595 ORTHO05D004132 6.7e-15 84.3 58 60.3
Sed0006790 Sechium edule HOM05D003595 ORTHO05D004132 6.7e-15 84.3 53 71.7
Gorai.001G138100 Gossypium raimondii HOM05D003595 ORTHO05D004132 8.8e-15 84.0 61 70.5
Carub.0001s4023 Capsella rubella HOM05D003595 ORTHO05D004132 2.0e-14 82.8 55 65.5
CiPaw.09G036200 Carya illinoinensis HOM05D003595 ORTHO05D004132 2.5e-14 82.4 66 59.1
QL07p021139 Quercus lobata HOM05D003595 ORTHO05D004132 2.5e-14 82.4 70 52.9
Medtr5g096855 Medicago truncatula HOM05D003595 ORTHO05D004132 3.3e-14 82.0 113 46.9
AT1G51355 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 4.3e-14 81.6 55 70.9
BolC1t04289H Brassica oleracea HOM05D003595 ORTHO05D004132 4.3e-14 81.6 54 66.7
Thhalv10022277m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 4.3e-14 81.6 52 69.2
MELO3C015194.2 Cucumis melo HOM05D003595 ORTHO05D004132 5.7e-14 81.3 57 68.4
BcaB06g26165 Brassica carinata HOM05D003595 ORTHO05D004132 7.4e-14 80.9 58 65.5
BcaC05g28203 Brassica carinata HOM05D003595 ORTHO05D004132 7.4e-14 80.9 58 65.5
A06p02550 Brassica napus HOM05D003595 ORTHO05D004132 7.4e-14 80.9 55 67.3
C05p43150 Brassica napus HOM05D003595 ORTHO05D004132 7.4e-14 80.9 58 65.5
BolC5t33045H Brassica oleracea HOM05D003595 ORTHO05D004132 7.4e-14 80.9 58 65.5
BraA06t23462Z Brassica rapa HOM05D003595 ORTHO05D004132 7.4e-14 80.9 55 67.3
Manes.09G025100 Manihot esculenta HOM05D003595 ORTHO05D004132 7.4e-14 80.9 101 42.6
A05p27810 Brassica napus HOM05D003595 ORTHO05D004132 9.7e-14 80.5 79 51.9
BcaB06g26163 Brassica carinata HOM05D003595 ORTHO05D004132 1.3e-13 80.1 58 65.5
C01p43270 Brassica napus HOM05D003595 ORTHO05D004132 1.3e-13 80.1 54 64.8
DCAR_031542 Daucus carota HOM05D003595 ORTHO05D004132 1.3e-13 80.1 61 59.0
Thecc.05G160100 Theobroma cacao HOM05D003595 ORTHO05D004132 1.3e-13 80.1 64 59.4
BcaB04g17226 Brassica carinata HOM05D003595 ORTHO05D004132 2.2e-13 79.3 112 48.2
BcaB04g20620 Brassica carinata HOM05D003595 ORTHO05D004132 2.2e-13 79.3 49 69.4
CARHR096780 Cardamine hirsuta HOM05D003595 ORTHO05D004132 2.2e-13 79.3 50 68.0
Medtr1g052770 Medicago truncatula HOM05D003595 ORTHO05D004132 2.2e-13 79.3 123 39.8
BcaC05g27345 Brassica carinata HOM05D003595 ORTHO05D004132 2.8e-13 79.0 115 42.6
C05p32690 Brassica napus HOM05D003595 ORTHO05D004132 2.8e-13 79.0 115 42.6
BolC5t32002H Brassica oleracea HOM05D003595 ORTHO05D004132 2.8e-13 79.0 115 42.6
BraA05t21668Z Brassica rapa HOM05D003595 ORTHO05D004132 2.8e-13 79.0 137 37.2
BcaC01g03534 Brassica carinata HOM05D003595 ORTHO05D004132 3.7e-13 78.6 59 64.4
BcaC08g43305 Brassica carinata HOM05D003595 ORTHO05D004132 3.7e-13 78.6 55 65.5
C03p51360 Brassica napus HOM05D003595 ORTHO05D004132 3.7e-13 78.6 59 64.4
C06p06520 Brassica napus HOM05D003595 ORTHO05D004132 3.7e-13 78.6 55 65.5
BolC3t17422H Brassica oleracea HOM05D003595 ORTHO05D004132 3.7e-13 78.6 59 64.4
BolC6t35764H Brassica oleracea HOM05D003595 ORTHO05D004132 3.7e-13 78.6 55 65.5
Lalb_Chr04g0247411 Lupinus albus HOM05D003595 ORTHO05D004132 4.8e-13 78.2 67 55.2
Lalb_Chr04g0247651 Lupinus albus HOM05D003595 ORTHO05D004132 4.8e-13 78.2 67 55.2
AT3G20898 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 6.3e-13 77.8 109 41.3
CsaV3_1G042810 Cucumis sativus L. HOM05D003595 ORTHO05D004132 6.3e-13 77.8 56 67.9
A03p41960 Brassica napus HOM05D003595 ORTHO05D004132 8.2e-13 77.4 59 62.7
Migut.D00603 Erythranthe guttata HOM05D003595 ORTHO05D004132 1.4e-12 76.6 143 37.1
Eucgr.J00765 Eucalyptus grandis HOM05D003595 ORTHO05D004132 1.4e-12 76.6 121 43.0
A05p19650 Brassica napus HOM05D003595 ORTHO05D004132 1.8e-12 76.3 113 38.9
BraA03t13349Z Brassica rapa HOM05D003595 ORTHO05D004132 1.8e-12 76.3 59 61.0
Lalb_Chr17g0349061 Lupinus albus HOM05D003595 ORTHO05D004132 1.8e-12 76.3 105 43.8
Carub.0003s2088 Capsella rubella HOM05D003595 ORTHO05D004132 3.1e-12 75.5 47 70.2
Sp3g18930 Schrenkiella parvula HOM05D003595 ORTHO05D004132 5.3e-12 74.7 49 65.3
CARHR041430 Cardamine hirsuta HOM05D003595 ORTHO05D004132 6.9e-12 74.3 49 67.3
AL3G34860 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 9.1e-12 73.9 47 68.1
BcaB07g33584 Brassica carinata HOM05D003595 ORTHO05D004132 9.1e-12 73.9 51 64.7
A01p33890 Brassica napus HOM05D003595 ORTHO05D004132 2.0e-11 72.8 54 61.1
BraA01t03497Z Brassica rapa HOM05D003595 ORTHO05D004132 2.0e-11 72.8 50 64.0
BraA05t20870Z Brassica rapa HOM05D003595 ORTHO05D004132 2.0e-11 72.8 113 38.9
BraA05t20871Z Brassica rapa HOM05D003595 ORTHO05D004132 2.0e-11 72.8 113 38.9
EL10Ac4g10246 Beta vulgaris HOM05D003595 ORTHO05D004132 2.6e-11 72.4 57 57.9
Aa31LG8G7720 Aethionema arabicum HOM05D003595 ORTHO05D004132 3.4e-11 72.0 48 64.6
SGA_v2.0_scaffold247G44878 Striga asiatica HOM05D003595 ORTHO05D004132 3.4e-11 72.0 57 63.2
AUR62000124 Chenopodium quinoa HOM05D003595 ORTHO05D004132 4.5e-11 71.6 61 55.7
AUR62019305 Chenopodium quinoa HOM05D003595 ORTHO05D004132 4.5e-11 71.6 61 55.7
Manes.07G063550 Manihot esculenta HOM05D003595 ORTHO05D004132 4.5e-11 71.6 66 48.5
Sed0028187 Sechium edule HOM05D003595 ORTHO05D004132 5.9e-11 71.2 49 65.3
Glyma.10G100700 Glycine max HOM05D003595 ORTHO05D004132 1.0e-10 70.5 68 50.0
Migut.J01773 Erythranthe guttata HOM05D003595 ORTHO05D004132 2.9e-10 68.9 57 57.9
arahy.Tifrunner.gnm1.ann1.IAUU74 Arachis hypogaea HOM05D003595 ORTHO05D004132 5.0e-10 68.2 58 56.9
ATR0332G104 Amborella trichopoda HOM05D003595 ORTHO05D004132 1.1e-09 67.0 60 55.0
arahy.Tifrunner.gnm1.ann1.8RT1B2 Arachis hypogaea HOM05D003595 ORTHO05D004132 1.1e-09 67.0 55 58.2
Ciclev10006718m.g Citrus clementina HOM05D003595 ORTHO05D004132 2.5e-09 65.9 51 56.9
Atru.chr1.1053 Acer truncatum HOM05D003595 ORTHO05D004132 4.2e-09 65.1 126 34.9
Ah.04g161940 Amaranthus hybridus HOM05D000545 ORTHO05D000539 7.2e-09 64.3 55 52.7
Gohir.A11G311600 Gossypium hirsutum HOM05D003595 ORTHO05D004132 9.4e-09 63.9 110 40.9
Aa31LG10G3530 Aethionema arabicum HOM05D003595 ORTHO05D004132 1.2e-08 63.5 44 63.6
Gohir.D11G328300 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.6e-08 63.2 108 41.7
Gorai.007G359500 Gossypium raimondii HOM05D003595 ORTHO05D004132 1.6e-08 63.2 108 41.7
Eucgr.A02382 Eucalyptus grandis HOM05D003595 ORTHO05D004132 7.9e-08 60.8 61 47.5
Sc09g0000730 Simmondsia chinensis HOM05D003595 ORTHO05D004132 7.9e-08 60.8 123 37.4
COL.COLO4_28188 Corchorus olitorius HOM05D003595 ORTHO05D004132 1.4e-07 60.1 53 56.6
Aqoxy2G00199 Aquilegia oxysepala HOM05D003595 ORTHO05D004132 1.8e-07 59.7 42 61.9
C03p89850 Brassica napus HOM05D003595 ORTHO05D004132 1.8e-07 59.7 112 41.1
GSVIVG01033314001 Vitis vinifera HOM05D003595 ORTHO05D004132 1.8e-07 59.7 37 64.9
BcaC01g01256 Brassica carinata HOM05D003595 ORTHO05D004132 2.3e-07 59.3 112 42.0
BolC3t21307H Brassica oleracea HOM05D003595 ORTHO05D004132 2.3e-07 59.3 112 42.0
Sp1g38020 Schrenkiella parvula HOM05D003595 ORTHO05D004132 3.9e-07 58.5 113 41.6
SGA_v2.0_scaffold18G08279 Striga asiatica HOM05D002383 ORTHO05D002515 5.7e-06 54.7 48 54.2
TPR.G1301 Trifolium pratense HOM05D302815 ORTHO05D004132 7.4e-06 54.3 28 82.1
BcaB02g11234 Brassica carinata HOM05D003595 ORTHO05D004132 9.7e-06 53.9 54 48.1


User provided reference genes

Program Settings