Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.4e-303 1045.4 509 100.0
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.4e-303 1045.4 509 100.0
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 4.8e-296 1020.4 509 97.4
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 4.8e-296 1020.4 509 97.4
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 3.6e-243 844.7 514 78.2
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 1.9e-239 832.4 523 78.2
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 1.7e-232 809.3 515 76.1
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.4e-231 806.2 513 77.0
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 2.4e-231 805.4 512 77.5
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 3.8e-224 781.6 517 72.9
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 7.1e-223 777.3 524 72.1
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 2.3e-221 772.3 526 70.7
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 3.9e-221 771.5 518 72.4
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 6.7e-221 770.8 526 70.9
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 1.9e-220 769.2 518 71.4
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 6.4e-216 754.2 525 69.1
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 3.5e-214 748.4 515 70.5
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 1.0e-213 746.9 515 69.7
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 3.0e-213 745.3 525 68.8
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 3.0e-213 745.3 523 72.1
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 1.6e-211 739.6 546 66.7
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 1.6e-211 739.6 546 66.7
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 1.6e-211 739.6 509 72.1
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 2.1e-211 739.2 510 71.4
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 8.2e-211 737.3 529 68.8
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 8.2e-211 737.3 529 68.8
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 1.5e-209 733.0 512 68.9
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 2.9e-208 728.8 504 71.2
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 3.8e-208 728.4 509 68.8
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 6.5e-208 727.6 505 72.1
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 1.9e-207 726.1 517 69.4
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 1.2e-206 723.4 529 67.9
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.6e-206 723.0 509 69.9
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 1.6e-206 723.0 514 68.7
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 1.6e-206 723.0 512 69.9
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 6.0e-206 721.1 505 69.7
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 1.3e-205 719.9 510 69.2
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 1.3e-205 719.9 506 69.8
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 2.3e-205 719.2 511 68.9
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 2.3e-205 719.2 506 69.6
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 6.7e-205 717.6 505 71.3
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 6.7e-205 717.6 506 69.6
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 3.3e-204 715.3 509 69.2
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 7.4e-204 714.1 523 66.9
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 1.6e-203 713.0 516 66.9
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 4.8e-203 711.4 517 68.3
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 5.3e-202 708.0 507 68.4
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 9.0e-202 707.2 506 70.2
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 7.6e-201 704.1 509 68.4
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 7.6e-201 704.1 510 67.3
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 3.8e-200 701.8 511 69.1
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 5.0e-200 701.4 510 68.0
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 8.5e-200 700.7 503 69.4
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 4.2e-199 698.4 504 68.1
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 4.2e-199 698.4 532 64.5
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 7.2e-199 697.6 505 68.9
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 2.7e-198 695.7 510 66.5
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 6.1e-198 694.5 519 67.1
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 6.1e-198 694.5 515 66.8
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 1.8e-197 693.0 516 67.2
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 1.1e-196 690.3 509 67.4
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 4.3e-196 688.3 508 66.1
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 8.2e-195 684.1 504 66.5
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 1.1e-194 683.7 510 66.1
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 2.4e-194 682.6 519 65.7
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 3.1e-194 682.2 515 67.6
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 6.9e-194 681.0 506 66.0
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 2.6e-193 679.1 512 67.0
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 3.4e-193 678.7 508 66.5
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 3.4e-193 678.7 509 67.0
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 2.9e-192 675.6 505 65.5
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.1e-191 673.7 532 62.8
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 1.1e-191 673.7 521 66.2
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 5.5e-191 671.4 520 65.4
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 7.2e-191 671.0 512 65.6
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 1.6e-190 669.8 524 63.2
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 7.9e-190 667.5 527 62.8
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 1.1e-188 663.7 537 62.9
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 2.0e-188 662.9 528 63.4
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 2.6e-188 662.5 514 63.6
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 3.3e-188 662.1 534 63.5
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 5.7e-188 661.4 524 62.8
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 9.7e-188 660.6 514 63.8
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 9.7e-188 660.6 520 63.1
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 1.3e-187 660.2 524 62.6
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 6.3e-187 657.9 522 63.2
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 8.2e-187 657.5 536 62.1
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 8.2e-187 657.5 514 63.0
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 1.8e-186 656.4 537 62.2
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 3.1e-186 655.6 530 62.6
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 9.1e-186 654.1 535 62.4
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 1.5e-185 653.3 543 61.1
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 1.0e-184 650.6 504 64.9
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 8.0e-182 641.0 506 61.9
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 2.3e-181 639.4 518 61.4
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 3.0e-181 639.0 493 61.7
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 1.1e-178 630.6 523 60.8
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 1.4e-178 630.2 446 71.1
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 4.1e-178 628.6 513 62.0
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 3.8e-176 622.1 512 61.7
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 3.2e-175 619.0 511 60.9
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 5.5e-175 618.2 510 62.5
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 9.4e-175 617.5 506 59.1
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 7.5e-172 607.8 455 65.9
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 6.3e-171 604.7 401 70.3
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 1.6e-169 600.1 524 58.0
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 2.7e-169 599.4 481 61.7
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 3.6e-166 589.0 393 72.5
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 4.0e-165 585.5 470 63.2
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 3.8e-160 568.9 433 61.4
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 9.2e-154 547.7 311 82.3
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 3.3e-151 539.3 467 58.7
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 6.8e-149 531.6 496 56.0
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 1.2e-148 530.8 382 66.0
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 8.3e-147 524.6 291 85.2
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 1.1e-141 507.7 311 76.5
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 6.4e-139 498.4 303 78.5
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 1.4e-133 480.7 311 71.4
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 2.2e-123 446.8 468 47.2
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 1.7e-120 437.2 382 57.6
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 5.6e-119 432.2 288 70.1
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 3.8e-115 419.5 452 45.6
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 1.6e-113 414.1 240 82.9
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 1.5e-111 407.5 238 82.8
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 3.3e-111 406.4 408 48.8
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 2.8e-110 403.3 239 80.3
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 3.5e-97 359.8 527 43.6
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 2.5e-87 327.0 339 53.1
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 3.1e-85 320.1 196 78.1
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 5.3e-85 319.3 316 53.8
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 1.4e-80 304.7 200 70.0
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 2.2e-78 297.4 235 61.7
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 4.4e-71 273.1 272 55.5
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 3.1e-69 266.9 166 78.9
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 4.2e-58 229.9 211 57.3
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 2.7e-57 227.3 211 56.4
QL08p008521 Quercus lobata HOM05D004336 ORTHO05D005367 3.7e-54 216.9 212 52.8
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 1.2e-52 211.8 157 67.5
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 9.4e-50 202.2 140 66.4
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 9.4e-50 202.2 140 66.4
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 3.6e-49 200.3 124 71.8
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 6.3e-46 189.5 180 51.7
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-45 188.0 427 29.7
MSTRG.14468 Avicennia marina HOM05D004336 ORTHO05D005367 1.2e-44 185.3 154 59.1
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 2.3e-43 181.0 109 81.7
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 3.7e-38 163.7 106 67.0
SHI26544 Sapria himalayana HOM05D004336 ORTHO05D005367 5.4e-37 159.8 164 50.6
Ah.06g181050 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.0e-35 155.6 174 49.4
SEGI_14116 Sequoiadendron giganteum HOM05D004336 ORTHO05D005367 1.5e-34 151.8 286 35.7
CDE07G0680 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 2.3e-32 144.4 167 46.7
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 5.2e-32 143.3 156 45.5
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 8.9e-32 142.5 98 73.5
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 2.2e-30 137.9 260 36.2
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 1.4e-29 135.2 266 35.7
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 2.4e-29 134.4 79 74.7
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 2.4e-29 134.4 79 74.7
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 8.6e-27 125.9 102 63.7
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 1.6e-25 121.7 85 63.5
RcHm_v2.0_Chr5g0079391 Rosa chinensis HOM05D004336 ORTHO05D005367 5.8e-23 113.2 98 56.1
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 6.2e-17 93.2 59 69.5
HanXRQChr04g0109771 Helianthus annuus HOM05D004336 ORTHO05D005367 1.4e-16 92.0 88 48.9
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 1.8e-16 91.7 74 63.5
AagrBONN_evm.TU.Sc2ySwM_228.1050 Anthoceros agrestis HOM05D004336 ORTHO05D005367 4.3e-10 70.5 167 30.5
TAR612G0001 Trochodendron aralioides HOM05D000054 ORTHO05D000171 4.4e-07 60.5 34 88.2


User provided reference genes

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