Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047688 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 4.6e-115 417.9 216 100.0
CSS0003180 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 1.0e-114 416.8 216 99.5
CSS0047568 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 8.6e-77 290.8 203 70.9
TAR374G1650 Trochodendron aralioides HOM05D004548 ORTHO05D005402 8.9e-74 280.8 207 68.1
GSVIVG01025270001 Vitis vinifera HOM05D004548 ORTHO05D005402 3.4e-73 278.9 205 68.3
Cfa019955 Carpinus fangiana HOM05D004548 ORTHO05D005402 2.4e-71 272.7 205 67.8
Rhsim12G0068000 Rhododendron simsii HOM05D004548 ORTHO05D005402 4.1e-71 271.9 209 66.0
Prupe.1G211800 Prunus persica HOM05D004548 ORTHO05D005402 1.3e-69 266.9 204 66.7
Lj1A1122T48 Lonicera japonica HOM05D004548 ORTHO05D005402 3.9e-69 265.4 209 62.7
SGA_v2.0_scaffold77G25307 Striga asiatica HOM05D004548 ORTHO05D005402 3.9e-69 265.4 204 63.7
Oeu058206.1 Olea europaea HOM05D004548 ORTHO05D005402 1.1e-68 263.8 202 64.4
Oeu058204.1 Olea europaea HOM05D004548 ORTHO05D005402 1.5e-68 263.5 202 63.9
Atru.chr12.1469 Acer truncatum HOM05D004548 ORTHO05D005402 2.5e-68 262.7 204 63.7
CiPaw.06G111100 Carya illinoinensis HOM05D004548 ORTHO05D005402 2.5e-68 262.7 204 66.2
Hma1.2p1_0738F.1_g210920 Hydrangea macrophylla HOM05D004548 ORTHO05D005402 4.3e-68 261.9 207 63.8
Nn4g22076 Nelumbo nucifera HOM05D004548 ORTHO05D005402 4.3e-68 261.9 208 62.5
Sed0003942 Sechium edule HOM05D004548 ORTHO05D005402 4.3e-68 261.9 207 62.3
Gohir.D09G002300 Gossypium hirsutum HOM05D004548 ORTHO05D005402 5.6e-68 261.5 207 63.8
Gorai.006G002800 Gossypium raimondii HOM05D004548 ORTHO05D005402 1.2e-67 260.4 207 63.3
MD13G1133800 Malus domestica HOM05D004548 ORTHO05D005402 1.6e-67 260.0 204 62.7
Gohir.A09G002500 Gossypium hirsutum HOM05D004548 ORTHO05D005402 2.1e-67 259.6 207 62.8
Ciclev10029256m.g Citrus clementina HOM05D004548 ORTHO05D005402 3.6e-67 258.8 204 64.7
SalBow3G2027 Salvia bowleyana HOM05D004548 ORTHO05D005402 3.6e-67 258.8 204 62.3
PGR119G2305 Punica granatum HOM05D004548 ORTHO05D005402 4.7e-67 258.5 209 62.2
RcHm_v2.0_Chr4g0428441 Rosa chinensis HOM05D004548 ORTHO05D005402 8.0e-67 257.7 209 61.2
MSTRG.17963 Avicennia marina HOM05D004548 ORTHO05D005402 1.0e-66 257.3 203 61.6
Duzib187G0077 Durio zibethinus HOM05D004548 ORTHO05D005402 1.4e-66 256.9 210 63.3
Migut.N00675 Erythranthe guttata HOM05D004548 ORTHO05D005402 2.3e-66 256.1 203 63.5
Manes.12G130500 Manihot esculenta HOM05D004548 ORTHO05D005402 2.3e-66 256.1 203 61.6
FvH4_4g22210 Fragaria vesca HOM05D004548 ORTHO05D005402 5.2e-66 255.0 212 60.8
QL03p048368 Quercus lobata HOM05D004548 ORTHO05D005402 6.8e-66 254.6 205 63.4
CANSAT80G0994 Cannabis sativa HOM05D004548 ORTHO05D005402 1.2e-65 253.8 222 58.6
COL.COLO4_06519 Corchorus olitorius HOM05D004548 ORTHO05D005402 2.0e-65 253.1 204 63.2
Aqoxy1G02233 Aquilegia oxysepala HOM05D004548 ORTHO05D005402 2.6e-65 252.7 209 61.7
ClCG07G012080 Citrullus lanatus HOM05D004548 ORTHO05D005402 3.4e-65 252.3 201 62.2
MELO3C017829.2 Cucumis melo HOM05D004548 ORTHO05D005402 3.4e-65 252.3 202 62.9
Thecc.01G240000 Theobroma cacao HOM05D004548 ORTHO05D005402 3.4e-65 252.3 207 61.4
FAN07G0049 Fragaria x ananassa HOM05D004548 ORTHO05D005402 5.8e-65 251.5 209 59.8
FAN12G2246 Fragaria x ananassa HOM05D004548 ORTHO05D005402 7.5e-65 251.1 212 59.4
CsaV3_4G002070 Cucumis sativus L. HOM05D004548 ORTHO05D005402 1.3e-64 250.4 202 62.4
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 4.9e-64 248.4 207 63.3
Potri.003G160500 Populus trichocarpa HOM05D004548 ORTHO05D005402 4.9e-64 248.4 204 59.3
Eucgr.J01653 Eucalyptus grandis HOM05D004548 ORTHO05D005402 1.4e-63 246.9 209 58.9
Glyma.09G186700 Glycine max HOM05D004548 ORTHO05D005402 2.4e-63 246.1 205 61.0
TWI18G0021 Tripterygium wilfordii HOM05D004548 ORTHO05D005402 2.4e-63 246.1 205 62.4
Cc01_g15960 Coffea canephora HOM05D004548 ORTHO05D005402 3.2e-63 245.7 203 60.1
Peaxi162Scf01242g00029 Petunia axillaris HOM05D004548 ORTHO05D005402 3.2e-63 245.7 198 61.6
Nitab4.5_0001348g0030 Nicotiana tabacum HOM05D004548 ORTHO05D005402 1.6e-62 243.4 197 60.4
Peaxi162Scf00235g00217 Petunia axillaris HOM05D004548 ORTHO05D005402 1.6e-62 243.4 204 57.4
Lj2g0001774 Lotus japonicus HOM05D004548 ORTHO05D005402 3.5e-62 242.3 201 58.7
Nitab4.5_0007144g0020 Nicotiana tabacum HOM05D004548 ORTHO05D005402 3.5e-62 242.3 197 60.4
Glyma.09G186800 Glycine max HOM05D004548 ORTHO05D005402 4.6e-62 241.9 192 62.0
MBI07_g42009_MAGBIO Magnolia biondii HOM05D004548 ORTHO05D005402 4.6e-62 241.9 203 59.6
HanXRQChr04g0124971 Helianthus annuus HOM05D004548 ORTHO05D005402 6.0e-62 241.5 203 58.1
THA.LOC104807222 Tarenaya hassleriana HOM05D004548 ORTHO05D005402 1.3e-61 240.4 209 59.8
Sc17g0004750 Simmondsia chinensis HOM05D004548 ORTHO05D005402 1.7e-61 240.0 207 58.9
ECA236G1448 Erigeron canadensis HOM05D004548 ORTHO05D005402 2.3e-61 239.6 209 55.5
Glyma.09G186900 Glycine max HOM05D004548 ORTHO05D005402 8.6e-61 237.7 205 58.5
Lsat_1_v5_gn_5_6480 Lactuca sativa HOM05D004548 ORTHO05D005402 8.6e-61 237.7 197 58.9
Lsat_1_v5_gn_8_83161 Lactuca sativa HOM05D004548 ORTHO05D005402 8.6e-61 237.7 197 58.9
Solyc06g082980.3 Solanum lycopersicum HOM05D004548 ORTHO05D005402 1.1e-60 237.3 198 57.1
Sopen06g034370 Solanum pennellii HOM05D004548 ORTHO05D005402 1.1e-60 237.3 198 57.1
EL10Ac8g18737 Beta vulgaris HOM05D004548 ORTHO05D005402 1.5e-60 236.9 209 54.5
CAN.G874.37 Capsicum annuum HOM05D004548 ORTHO05D005402 1.5e-60 236.9 198 58.6
Phvul.004G160000 Phaseolus vulgaris HOM05D004548 ORTHO05D005402 1.9e-60 236.5 206 59.7
PGSC0003DMG400027684 Solanum tuberosum HOM05D004548 ORTHO05D005402 1.9e-60 236.5 198 57.1
VMungo0464G1792 Vigna mungo HOM05D004548 ORTHO05D005402 1.9e-60 236.5 206 58.3
AL1G32850 Arabidopsis lyrata HOM05D004548 ORTHO05D005402 2.5e-60 236.1 204 59.8
Carub.0001s1957 Capsella rubella HOM05D004548 ORTHO05D005402 1.6e-59 233.4 204 59.3
PSO675G5153 Papaver somniferum HOM05D004548 ORTHO05D005402 2.8e-59 232.6 203 57.6
PGR119G0727 Punica granatum HOM05D004548 ORTHO05D005402 2.8e-59 232.6 210 54.3
PSO541G3463 Papaver somniferum HOM05D004548 ORTHO05D005402 4.7e-59 231.9 203 57.1
Aa31LG7G10030 Aethionema arabicum HOM05D004548 ORTHO05D005402 6.2e-59 231.5 213 57.7
Hund23298 Selenicereus undatus HOM05D004548 ORTHO05D005402 8.1e-59 231.1 204 56.4
CDE04G3258 Ceratophyllum demersum HOM05D004548 ORTHO05D005402 1.4e-58 230.3 197 60.4
AT1G20050 Arabidopsis thaliana HOM05D004548 ORTHO05D005402 1.8e-58 229.9 210 58.1
Lalb_Chr14g0371281 Lupinus albus HOM05D004548 ORTHO05D005402 2.3e-58 229.6 206 57.8
TPR.G38981 Trifolium pratense HOM05D004548 ORTHO05D005402 4.0e-58 228.8 205 57.1
AUR62013297 Chenopodium quinoa HOM05D004548 ORTHO05D005402 1.2e-57 227.3 195 54.9
BraA07t29333Z Brassica rapa HOM05D004548 ORTHO05D005402 1.5e-57 226.9 202 55.9
TPR.G38962 Trifolium pratense HOM05D004548 ORTHO05D005402 1.5e-57 226.9 205 56.1
BcaB03g14416 Brassica carinata HOM05D004548 ORTHO05D005402 2.0e-57 226.5 202 56.4
CARHR020520 Cardamine hirsuta HOM05D004548 ORTHO05D005402 2.6e-57 226.1 192 58.9
A07p16050 Brassica napus HOM05D004548 ORTHO05D005402 3.4e-57 225.7 202 55.4
ATR0665G198 Amborella trichopoda HOM05D004548 ORTHO05D005402 5.8e-57 224.9 212 55.2
unitig_0.g417 Utricularia gibba HOM05D004548 ORTHO05D005402 7.5e-57 224.6 192 60.9
Medtr6g084920 Medicago truncatula HOM05D004548 ORTHO05D005402 9.8e-57 224.2 205 56.1
BcaB03g14346 Brassica carinata HOM05D004548 ORTHO05D005402 1.3e-56 223.8 190 58.4
Thhalv10008732m.g Eutrema salsugineum HOM05D004548 ORTHO05D005402 1.7e-56 223.4 205 55.6
C07p23420 Brassica napus HOM05D004548 ORTHO05D005402 2.9e-56 222.6 191 58.6
BolC7t42875H Brassica oleracea HOM05D004548 ORTHO05D005402 2.9e-56 222.6 191 58.6
FAN17G2493 Fragaria x ananassa HOM05D004548 ORTHO05D005402 2.9e-56 222.6 261 46.4
Hund18283 Selenicereus undatus HOM05D004548 ORTHO05D005402 3.7e-56 222.2 200 57.0
A06p16180 Brassica napus HOM05D004548 ORTHO05D005402 4.9e-56 221.9 200 57.5
BolC5t30565H Brassica oleracea HOM05D004548 ORTHO05D005402 4.9e-56 221.9 206 54.9
Sp1g17810 Schrenkiella parvula HOM05D004548 ORTHO05D005402 1.1e-55 220.7 190 57.9
vmacro15975 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 1.1e-55 220.7 193 59.1
arahy.Tifrunner.gnm1.ann1.Y6E3CC Arachis hypogaea HOM05D004548 ORTHO05D005402 1.4e-55 220.3 166 64.5
BraA06t24724Z Brassica rapa HOM05D004548 ORTHO05D005402 1.9e-55 219.9 208 52.9
arahy.Tifrunner.gnm1.ann1.L8Q3U6 Arachis hypogaea HOM05D004548 ORTHO05D005402 5.4e-55 218.4 196 58.2
HPP92_007022 Vanilla planifolia HOM05D004548 ORTHO05D005402 1.6e-54 216.9 204 53.4
HPP92_007039 Vanilla planifolia HOM05D004548 ORTHO05D005402 3.5e-54 215.7 201 54.2
SGA_v2.0_scaffold95G28703 Striga asiatica HOM05D004548 ORTHO05D005402 7.8e-54 214.5 192 57.3
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 3.0e-53 212.6 162 64.2
SEGI_00448 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 3.3e-52 209.1 194 55.7
BcaC05g25903 Brassica carinata HOM05D004548 ORTHO05D005402 4.3e-52 208.8 184 58.2
SMO119G0501 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 9.5e-52 207.6 205 53.2
BcaB07g32020 Brassica carinata HOM05D004548 ORTHO05D005402 1.6e-51 206.8 191 57.1
Haze_12526 Corylus avellana HOM05D004548 ORTHO05D005402 2.8e-51 206.1 206 56.3
TPR.G21858 Trifolium pratense HOM05D004548 ORTHO05D005402 4.7e-51 205.3 170 58.2
Ca_25508_v3 Cicer arietinum L. HOM05D004548 ORTHO05D005402 1.4e-50 203.8 163 60.1
Ciclev10029254m.g Citrus clementina HOM05D004548 ORTHO05D005402 1.8e-50 203.4 207 52.2
Ciclev10002435m.g Citrus clementina HOM05D004548 ORTHO05D005402 2.3e-50 203.0 207 52.2
Zm00001eb334120 Zea mays HOM05D004548 ORTHO05D005402 2.3e-50 203.0 204 52.9
Os01g0103600 Oryza sativa ssp. japonica HOM05D004548 ORTHO05D005402 7.6e-49 198.0 198 52.5
Nn3g16208 Nelumbo nucifera HOM05D004548 ORTHO05D005402 1.3e-48 197.2 152 65.1
Cfa009469 Carpinus fangiana HOM05D004548 ORTHO05D005402 2.2e-48 196.4 150 66.0
MD16G1144400 Malus domestica HOM05D004548 ORTHO05D005402 3.2e-47 192.6 151 61.6
BcaB03g14342 Brassica carinata HOM05D004548 ORTHO05D005402 3.5e-46 189.1 202 50.5
AUR62011188 Chenopodium quinoa HOM05D004548 ORTHO05D005402 1.3e-45 187.2 162 54.9
SMO196G0274 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 1.3e-45 187.2 191 49.2
DCAR_019172 Daucus carota HOM05D004548 ORTHO05D005402 3.0e-45 186.0 150 63.3
BcaC05g25905 Brassica carinata HOM05D004548 ORTHO05D005402 8.6e-45 184.5 192 53.6
BcaB03g14411 Brassica carinata HOM05D004548 ORTHO05D005402 3.3e-44 182.6 202 49.5
Pp3c9_19720 Physcomitrium patens HOM05D004548 ORTHO05D005402 4.3e-44 182.2 196 52.6
EL10Ac8g18743 Beta vulgaris HOM05D004548 ORTHO05D005402 3.6e-43 179.1 204 44.1
Zm00001eb126960 Zea mays HOM05D004548 ORTHO05D005402 8.1e-43 177.9 205 47.8
vmacro04885 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 8.9e-42 174.5 209 49.3
Mapoly0026s0030 Marchantia polymorpha HOM05D004548 ORTHO05D005402 2.0e-41 173.3 212 45.3
Psat1g039080 Pisum sativum HOM05D004548 ORTHO05D005402 4.2e-39 165.6 144 59.0
AagrBONN_evm.TU.Sc2ySwM_228.5752 Anthoceros agrestis HOM05D004548 ORTHO05D005402 1.0e-37 161.0 202 44.6
Ciclev10006027m.g Citrus clementina HOM05D004548 ORTHO05D005402 8.7e-37 157.9 152 51.3
Sabra03G0116700 Salix brachista HOM05D004548 ORTHO05D005402 4.3e-36 155.6 204 45.1
C05p18540 Brassica napus HOM05D004548 ORTHO05D005402 8.1e-35 151.4 205 43.9
EL10Ac8g18747 Beta vulgaris HOM05D004548 ORTHO05D005402 7.6e-33 144.8 155 45.2
SEGI_03556 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 6.4e-32 141.7 109 64.2
Ah.09g224580 Amaranthus hybridus HOM05D004548 ORTHO05D005402 1.9e-31 140.2 205 39.5
Ah.14g079290 Amaranthus hybridus HOM05D004548 ORTHO05D005402 1.2e-30 137.5 109 61.5
Actinidia09588 Actinidia chinensis HOM05D004548 ORTHO05D005402 2.7e-30 136.3 123 59.3
Cre12.g557900 Chlamydomonas reinhardtii HOM05D004548 ORTHO05D005402 3.5e-30 136.0 202 39.1
EL10Ac8g18745 Beta vulgaris HOM05D004548 ORTHO05D005402 7.9e-30 134.8 204 37.3
BcaC05g25899 Brassica carinata HOM05D004548 ORTHO05D005402 2.3e-29 133.3 205 41.0
Sabra01G0049300 Salix brachista HOM05D004548 ORTHO05D000739 3.9e-29 132.5 103 65.0
Oeu051508.1 Olea europaea HOM05D004548 ORTHO05D005402 6.7e-29 131.7 94 66.0
Mapoly0072s0066 Marchantia polymorpha HOM05D004548 ORTHO05D005402 3.2e-23 112.8 190 39.5
Potri.001G070301 Populus trichocarpa HOM05D004548 ORTHO05D005402 9.3e-23 111.3 85 63.5
EL10Ac8g18744 Beta vulgaris HOM05D004548 ORTHO05D005402 1.3e-21 107.5 124 45.2
EL10Ac8g18746 Beta vulgaris HOM05D004548 ORTHO05D005402 1.8e-21 107.1 204 34.8
COL.COLO4_05696 Corchorus olitorius HOM05D004548 ORTHO05D005402 4.0e-18 95.9 68 69.1
Nitab4.5_0000038g0240 Nicotiana tabacum HOM05D004548 ORTHO05D005402 1.5e-17 94.0 80 60.0
CBR_g55168 Chara braunii HOM05D004548 ORTHO05D005402 2.6e-17 93.2 126 43.7
FAN12G3080 Fragaria x ananassa HOM05D004548 ORTHO05D005402 4.6e-14 82.4 168 36.9
Ah.16g106680 Amaranthus hybridus HOM05D004548 ORTHO05D005402 2.5e-12 76.6 63 61.9
Psat5g295440 Pisum sativum HOM05D004548 ORTHO05D005402 2.1e-11 73.6 71 50.7
MELO3C030902.2 Cucumis melo HOM05D004548 ORTHO05D005402 2.2e-08 63.5 81 45.7


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