Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047660 Camellia sinensis var. sinensis HOM05D007678 ORTHO05D009658 3.1e-59 231.5 108 100.0
Rhsim01G0121700 Rhododendron simsii HOM05D007678 ORTHO05D009658 1.1e-21 106.7 60 85.0
Dinv31528 Davidia involucrata HOM05D007678 ORTHO05D009658 4.4e-21 104.8 60 83.3
QL04p021923 Quercus lobata HOM05D007678 ORTHO05D009658 1.3e-20 103.2 60 86.7
Actinidia01693 Actinidia chinensis HOM05D007678 ORTHO05D009658 3.7e-20 101.7 60 80.0
QL04p021970 Quercus lobata HOM05D007678 ORTHO05D009658 6.3e-20 100.9 60 83.3
QL04p022035 Quercus lobata HOM05D007678 ORTHO05D009658 6.3e-20 100.9 60 83.3
vmacro20847 Vaccinium macrocarpon HOM05D007678 ORTHO05D009658 5.3e-19 97.8 84 64.3
Haze_02966 Corylus avellana HOM05D007678 ORTHO05D009658 9.1e-19 97.1 60 80.0
Thecc.10G137600 Theobroma cacao HOM05D007678 ORTHO05D009658 1.2e-18 96.7 67 70.1
CiPaw.14G011000 Carya illinoinensis HOM05D007678 ORTHO05D009658 2.0e-18 95.9 60 78.3
Ca_04109_v3 Cicer arietinum L. HOM05D007678 ORTHO05D009658 4.5e-18 94.7 60 78.3
Ca_04118_v3 Cicer arietinum L. HOM05D007678 ORTHO05D009658 4.5e-18 94.7 60 78.3
Duzib106G1843 Durio zibethinus HOM05D007678 ORTHO05D009658 4.5e-18 94.7 67 70.1
Psat3g196520 Pisum sativum HOM05D007678 ORTHO05D009658 4.5e-18 94.7 60 76.7
Atru.chr2.1713_Atru.chr2.1714 Acer truncatum HOM05D007678 ORTHO05D009658 5.9e-18 94.4 60 73.3
COL.COLO4_04659 Corchorus olitorius HOM05D007678 ORTHO05D009658 5.9e-18 94.4 60 75.0
Eucgr.G03196 Eucalyptus grandis HOM05D007678 ORTHO05D009658 5.9e-18 94.4 60 75.0
Potri.001G033500 Populus trichocarpa HOM05D007678 ORTHO05D009658 7.7e-18 94.0 60 75.0
Prupe.2G048500 Prunus persica HOM05D007678 ORTHO05D009658 7.7e-18 94.0 60 78.3
TAR623G0324 Trochodendron aralioides HOM05D007678 ORTHO05D009658 7.7e-18 94.0 60 75.0
PGR031G1114 Punica granatum HOM05D007678 ORTHO05D009658 3.8e-17 91.7 60 75.0
Lj1g0010481 Lotus japonicus HOM05D007678 ORTHO05D009658 5.0e-17 91.3 60 75.0
Sabra01G0023800 Salix brachista HOM05D007678 ORTHO05D009658 6.5e-17 90.9 62 69.4
MBI13_g30074_MAGBIO Magnolia biondii HOM05D007678 ORTHO05D009658 8.5e-17 90.5 60 70.0
MD02G1272300 Malus domestica HOM05D007678 ORTHO05D009658 8.5e-17 90.5 60 75.0
Cpa.g.sc33.162 Carica papaya HOM05D007678 ORTHO05D009658 1.1e-16 90.1 64 73.4
RcHm_v2.0_Chr1g0328821 Rosa chinensis HOM05D007678 ORTHO05D009658 1.9e-16 89.4 60 70.0
Sed0019894 Sechium edule HOM05D000001 ORTHO05D000003 1.9e-16 89.4 60 73.3
AUR62031676 Chenopodium quinoa HOM05D007678 ORTHO05D009658 3.2e-16 88.6 60 71.7
MELO3C034052.2 Cucumis melo HOM05D007678 ORTHO05D009658 3.2e-16 88.6 60 71.7
EL10Ac2g02701 Beta vulgaris HOM05D007678 ORTHO05D009658 4.2e-16 88.2 60 68.3
Medtr7g009670 Medicago truncatula HOM05D007678 ORTHO05D009658 4.2e-16 88.2 60 71.7
Nn7g37012 Nelumbo nucifera HOM05D007678 ORTHO05D009658 4.2e-16 88.2 60 68.3
FAN06G1516 Fragaria x ananassa HOM05D007678 ORTHO05D009658 5.5e-16 87.8 79 57.0
Oeu044217.3 Olea europaea HOM05D007678 ORTHO05D009658 5.5e-16 87.8 61 67.2
arahy.Tifrunner.gnm1.ann1.6E2HM0 Arachis hypogaea HOM05D007678 ORTHO05D009658 7.2e-16 87.4 74 60.8
TWI38G1059 Tripterygium wilfordii HOM05D007678 ORTHO05D009658 7.2e-16 87.4 60 68.3
VMungo1383G0210 Vigna mungo HOM05D000430 ORTHO05D009658 7.2e-16 87.4 62 72.6
Ah.12g064780 Amaranthus hybridus HOM05D007678 ORTHO05D009658 9.4e-16 87.0 60 66.7
ATR0307G037 Amborella trichopoda HOM05D007678 ORTHO05D009658 9.4e-16 87.0 59 67.8
FAN10G0661 Fragaria x ananassa HOM05D007678 ORTHO05D009658 9.4e-16 87.0 60 70.0
CDE09G0612 Ceratophyllum demersum HOM05D007678 ORTHO05D009658 1.6e-15 86.3 58 70.7
CsaV3_5G029470 Cucumis sativus L. HOM05D007678 ORTHO05D000003 2.1e-15 85.9 61 73.8
Lalb_Chr17g0337231 Lupinus albus HOM05D007678 ORTHO05D009658 2.1e-15 85.9 60 66.7
arahy.Tifrunner.gnm1.ann1.78M82M Arachis hypogaea HOM05D007678 ORTHO05D009658 2.7e-15 85.5 79 57.0
arahy.Tifrunner.gnm1.ann1.EB95VJ Arachis hypogaea HOM05D007678 ORTHO05D009658 2.7e-15 85.5 61 68.9
Glyma.18G256300 Glycine max HOM05D007678 ORTHO05D009658 2.7e-15 85.5 63 69.8
Gorai.011G222500 Gossypium raimondii HOM05D007678 ORTHO05D009658 2.7e-15 85.5 67 61.2
FvH4_7g04260 Fragaria vesca HOM05D007678 ORTHO05D009658 3.6e-15 85.1 60 68.3
Gohir.D10G198600 Gossypium hirsutum HOM05D007678 ORTHO05D009658 3.6e-15 85.1 67 61.2
Cc06_g20600 Coffea canephora HOM05D007678 ORTHO05D009658 4.7e-15 84.7 60 68.3
Glyma.09G240200 Glycine max HOM05D007678 ORTHO05D009658 6.1e-15 84.3 62 72.6
HanXRQChr12g0376111 Helianthus annuus HOM05D007678 ORTHO05D009658 6.1e-15 84.3 60 68.3
Gohir.A10G190900 Gossypium hirsutum HOM05D007678 ORTHO05D009658 8.0e-15 84.0 67 59.7
SalBow6G2419 Salvia bowleyana HOM05D007678 ORTHO05D009658 8.0e-15 84.0 73 58.9
CAN.G128.118 Capsicum annuum HOM05D001269 ORTHO05D001083 1.4e-14 83.2 71 59.2
Peaxi162Scf00153g00057 Petunia axillaris HOM05D007678 ORTHO05D009658 1.4e-14 83.2 71 56.3
arahy.Tifrunner.gnm1.ann1.L3S1G4 Arachis hypogaea HOM05D007678 ORTHO05D009658 2.3e-14 82.4 74 56.8
Sc10g0003150 Simmondsia chinensis HOM05D007678 ORTHO05D009658 2.3e-14 82.4 51 72.5
HPP92_018248 Vanilla planifolia HOM05D007678 ORTHO05D009658 2.3e-14 82.4 57 64.9
Solyc10g081280.2 Solanum lycopersicum HOM05D007678 ORTHO05D009658 3.9e-14 81.6 60 66.7
Sopen10g031780 Solanum pennellii HOM05D007678 ORTHO05D009658 6.7e-14 80.9 60 63.3
PGSC0003DMG401028118 Solanum tuberosum HOM05D007678 ORTHO05D009658 6.7e-14 80.9 60 65.0
TPR.G4277 Trifolium pratense HOM05D007678 ORTHO05D009658 8.8e-14 80.5 51 76.5
DCAR_001914 Daucus carota HOM05D007678 ORTHO05D009658 1.1e-13 80.1 59 67.8
Nitab4.5_0008005g0010 Nicotiana tabacum HOM05D007678 ORTHO05D009658 1.1e-13 80.1 60 65.0
arahy.Tifrunner.gnm1.ann1.1DGF2A Arachis hypogaea HOM05D007678 ORTHO05D009658 2.6e-13 79.0 61 65.6
Hund13420 Selenicereus undatus HOM05D007678 ORTHO05D009658 3.3e-13 78.6 68 60.3
Migut.J01589 Erythranthe guttata HOM05D007678 ORTHO05D009658 1.3e-12 76.6 60 63.3
ECA248G0545 Erigeron canadensis HOM05D007678 ORTHO05D009658 2.2e-12 75.9 60 63.3
Zm00001eb303400 Zea mays HOM05D007678 ORTHO05D009658 1.4e-11 73.2 60 60.0
Phvul.008G043200 Phaseolus vulgaris HOM05D007678 ORTHO05D009658 3.1e-11 72.0 53 69.8
Lsat_1_v5_gn_7_114920 Lactuca sativa HOM05D007678 ORTHO05D009658 5.3e-11 71.2 60 60.0
Manes.04G155050 Manihot esculenta HOM05D007678 ORTHO05D009658 1.2e-10 70.1 57 63.2
unitig_37.g12769 Utricularia gibba HOM05D007678 ORTHO05D009658 8.5e-09 63.9 60 50.0
Nitab4.5_0000062g0570 Nicotiana tabacum HOM05D007678 ORTHO05D009658 4.2e-08 61.6 71 47.9
Pp3c18_7980 Physcomitrium patens HOM05D007678 ORTHO05D009658 1.2e-07 60.1 53 54.7
CBR_g30334 Chara braunii HOM05D007678 ORTHO05D009658 2.7e-07 58.9 59 50.8
QL02p047905 Quercus lobata HOM05D007678 ORTHO05D009658 4.7e-07 58.2 42 71.4
HanXRQChr11g0352371 Helianthus annuus HOM05D007678 ORTHO05D009658 6.1e-07 57.8 52 53.8
arahy.Tifrunner.gnm1.ann1.MMNX5U Arachis hypogaea HOM05D000747 ORTHO05D009658 1.0e-06 57.0 52 63.5
Mapoly0003s0067 Marchantia polymorpha HOM05D007678 ORTHO05D009658 3.0e-06 55.5 57 45.6


User provided reference genes

Program Settings