Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047659 Camellia sinensis var. sinensis HOM05D006402 ORTHO05D008099 2.2e-82 308.9 158 100.0
Hma1.2p1_0023F.1_g015780 Hydrangea macrophylla HOM05D006402 ORTHO05D008099 7.7e-59 230.7 158 73.4
Rhsim07G0248600 Rhododendron simsii HOM05D006402 ORTHO05D008099 1.9e-57 226.1 151 77.5
Lj4C17T8 Lonicera japonica HOM05D006402 ORTHO05D008099 2.5e-57 225.7 158 72.8
Dinv18455 Davidia involucrata HOM05D006402 ORTHO05D008099 8.0e-56 220.7 150 78.0
Manes.05G142900 Manihot esculenta HOM05D006402 ORTHO05D008099 1.8e-55 219.5 153 73.9
TAR628G1405 Trochodendron aralioides HOM05D006402 ORTHO05D008099 8.2e-53 210.7 158 69.0
SalBow6G2408 Salvia bowleyana HOM05D006402 ORTHO05D008099 2.4e-52 209.1 137 75.2
Sopen04g035580 Solanum pennellii HOM05D006402 ORTHO05D008099 1.2e-51 206.8 156 66.7
Solyc04g081940.3 Solanum lycopersicum HOM05D006402 ORTHO05D008099 1.6e-51 206.5 156 66.7
COL.COLO4_26087 Corchorus olitorius HOM05D006402 ORTHO05D008099 2.0e-51 206.1 157 71.3
Cc10_g01150 Coffea canephora HOM05D006402 ORTHO05D008099 2.7e-51 205.7 156 70.5
PGSC0003DMG400009954 Solanum tuberosum HOM05D006402 ORTHO05D008099 3.5e-51 205.3 156 66.7
SalBow7G2419 Salvia bowleyana HOM05D006402 ORTHO05D008099 5.9e-51 204.5 156 67.3
Duzib093G1673 Durio zibethinus HOM05D006402 ORTHO05D008099 1.0e-50 203.8 158 69.6
Nitab4.5_0003030g0100 Nicotiana tabacum HOM05D006402 ORTHO05D008099 1.3e-50 203.4 156 67.3
Sed0012705 Sechium edule HOM05D006402 ORTHO05D008099 2.2e-50 202.6 150 70.7
Sopen02g030620 Solanum pennellii HOM05D006402 ORTHO05D008099 2.2e-50 202.6 156 66.7
Aqoxy6G00455 Aquilegia oxysepala HOM05D006402 ORTHO05D008099 5.0e-50 201.4 159 68.6
DCAR_007723 Daucus carota HOM05D006402 ORTHO05D008099 6.5e-50 201.1 153 64.7
Aa31LG4G6170 Aethionema arabicum HOM05D006402 ORTHO05D008099 8.5e-50 200.7 156 67.3
AL2G36080 Arabidopsis lyrata HOM05D006402 ORTHO05D008099 8.5e-50 200.7 151 70.9
Nn6g34597 Nelumbo nucifera HOM05D006402 ORTHO05D008099 8.5e-50 200.7 154 67.5
Migut.C00897 Erythranthe guttata HOM05D006402 ORTHO05D008099 1.1e-49 200.3 159 67.3
Solyc02g085937.1 Solanum lycopersicum HOM05D006402 ORTHO05D008099 1.1e-49 200.3 156 65.4
CAN.G311.71 Capsicum annuum HOM05D006402 ORTHO05D008099 1.5e-49 199.9 156 65.4
ClCG08G014030 Citrullus lanatus HOM05D006402 ORTHO05D008099 1.5e-49 199.9 150 71.3
Gohir.A06G001000 Gossypium hirsutum HOM05D006402 ORTHO05D008099 1.9e-49 199.5 153 68.0
Potri.002G016600 Populus trichocarpa HOM05D006402 ORTHO05D008099 1.9e-49 199.5 158 65.8
Sed0017306 Sechium edule HOM05D006402 ORTHO05D008099 2.5e-49 199.1 152 68.4
Peaxi162Scf00174g00075 Petunia axillaris HOM05D006402 ORTHO05D008099 7.2e-49 197.6 153 67.3
Sc02g0008870 Simmondsia chinensis HOM05D006402 ORTHO05D008099 7.2e-49 197.6 125 80.8
Carub.0002s2294 Capsella rubella HOM05D006402 ORTHO05D008099 1.2e-48 196.8 151 68.9
Sp5g31180 Schrenkiella parvula HOM05D006402 ORTHO05D008099 1.2e-48 196.8 150 68.7
AT1G76060 Arabidopsis thaliana HOM05D006402 ORTHO05D008099 2.1e-48 196.1 156 67.9
A02p20400 Brassica napus HOM05D006402 ORTHO05D008099 2.1e-48 196.1 149 69.1
AUR62016156 Chenopodium quinoa HOM05D006402 ORTHO05D008099 2.1e-48 196.1 126 77.0
Thhalv10019271m.g Eutrema salsugineum HOM05D006402 ORTHO05D008099 2.7e-48 195.7 151 68.2
MSTRG.1145 Avicennia marina HOM05D006402 ORTHO05D008099 3.6e-48 195.3 129 76.0
Gorai.010G001200 Gossypium raimondii HOM05D006402 ORTHO05D008099 4.7e-48 194.9 153 66.0
Thecc.08G051300 Theobroma cacao HOM05D006402 ORTHO05D008099 4.7e-48 194.9 152 68.4
Gorai.006G031900 Gossypium raimondii HOM05D006402 ORTHO05D008099 8.0e-48 194.1 153 68.6
Sabra02G0013300 Salix brachista HOM05D006402 ORTHO05D008099 1.0e-47 193.7 157 65.6
Actinidia29765 Actinidia chinensis HOM05D006402 ORTHO05D008099 1.8e-47 193.0 158 63.9
ECA238G1428 Erigeron canadensis HOM05D006402 ORTHO05D008099 1.8e-47 193.0 161 63.4
Gohir.A09G028000 Gossypium hirsutum HOM05D006402 ORTHO05D008099 2.3e-47 192.6 153 66.7
AUR62036301 Chenopodium quinoa HOM05D006402 ORTHO05D008099 3.0e-47 192.2 128 75.0
MELO3C011341.2 Cucumis melo HOM05D006402 ORTHO05D008099 3.0e-47 192.2 144 69.4
THA.LOC104811442 Tarenaya hassleriana HOM05D006402 ORTHO05D008099 4.0e-47 191.8 153 67.3
HanXRQChr14g0429471 Helianthus annuus HOM05D006402 ORTHO05D008099 5.2e-47 191.4 156 64.1
PGR142G1353 Punica granatum HOM05D006402 ORTHO05D008099 5.2e-47 191.4 125 78.4
Atru.chr13.220 Acer truncatum HOM05D006402 ORTHO05D008099 8.8e-47 190.7 153 67.3
PGSC0003DMG400012651 Solanum tuberosum HOM05D006402 ORTHO05D008099 8.8e-47 190.7 134 68.7
Ciclev10002722m.g Citrus clementina HOM05D006402 ORTHO05D008099 1.2e-46 190.3 151 66.2
Haze_22699 Corylus avellana HOM05D006402 ORTHO05D008099 1.2e-46 190.3 144 70.8
MD08G1008000 Malus domestica HOM05D006402 ORTHO05D008099 1.2e-46 190.3 152 66.4
CARHR069600 Cardamine hirsuta HOM05D006402 ORTHO05D008099 1.5e-46 189.9 156 63.5
BcaC08g47098 Brassica carinata HOM05D006402 ORTHO05D008099 2.0e-46 189.5 155 65.2
QL02p012927 Quercus lobata HOM05D006402 ORTHO05D008099 2.6e-46 189.1 124 75.0
unitig_32.g11245 Utricularia gibba HOM05D006402 ORTHO05D008099 2.6e-46 189.1 128 74.2
SGA_v2.0_scaffold292G47394 Striga asiatica HOM05D006402 ORTHO05D008099 3.4e-46 188.7 156 63.5
EL10Ac1g02084 Beta vulgaris HOM05D006402 ORTHO05D008099 4.4e-46 188.3 149 65.1
PSO675G2459 Papaver somniferum HOM05D006402 ORTHO05D008099 4.4e-46 188.3 164 61.6
Sc02g0008830 Simmondsia chinensis HOM05D006402 ORTHO05D008099 4.4e-46 188.3 125 78.4
CiPaw.08G069100 Carya illinoinensis HOM05D006402 ORTHO05D008099 5.7e-46 188.0 142 69.7
A07p41620 Brassica napus HOM05D006402 ORTHO05D008099 1.3e-45 186.8 156 66.0
BolC6t40039H Brassica oleracea HOM05D006402 ORTHO05D008099 1.3e-45 186.8 156 66.7
BraA07t31691Z Brassica rapa HOM05D006402 ORTHO05D008099 1.3e-45 186.8 156 66.0
CANSAT25G3089 Cannabis sativa HOM05D006402 ORTHO05D008099 1.7e-45 186.4 126 73.0
Prupe.1G359800 Prunus persica HOM05D006402 ORTHO05D008099 1.7e-45 186.4 152 67.1
Cfa014004 Carpinus fangiana HOM05D006402 ORTHO05D008099 2.8e-45 185.7 158 63.3
arahy.Tifrunner.gnm1.ann1.KWDT0T Arachis hypogaea HOM05D006402 ORTHO05D008099 3.7e-45 185.3 152 63.8
C06p50000 Brassica napus HOM05D006402 ORTHO05D008099 3.7e-45 185.3 156 66.0
Cpa.g.sc81.101 Carica papaya HOM05D006402 ORTHO05D008099 3.7e-45 185.3 123 77.2
PSO541G5119 Papaver somniferum HOM05D006402 ORTHO05D008099 5.4e-44 181.4 152 61.8
arahy.Tifrunner.gnm1.ann1.R93WT9 Arachis hypogaea HOM05D006402 ORTHO05D008099 5.9e-43 177.9 152 61.8
HPP92_013449 Vanilla planifolia HOM05D006402 ORTHO05D008099 7.7e-43 177.6 124 71.8
MBI03_g11314_MAGBIO Magnolia biondii HOM05D006402 ORTHO05D008099 1.3e-42 176.8 127 68.5
Lalb_Chr23g0266011 Lupinus albus HOM05D006402 ORTHO05D008099 3.8e-42 175.3 128 66.4
TWI14G1330 Tripterygium wilfordii HOM05D006402 ORTHO05D008099 3.8e-42 175.3 158 61.4
RcHm_v2.0_Chr6g0303641 Rosa chinensis HOM05D006402 ORTHO05D008099 6.5e-42 174.5 154 63.6
Lsat_1_v5_gn_2_6761 Lactuca sativa HOM05D006402 ORTHO05D008099 8.5e-42 174.1 159 60.4
Ca_13483_v3 Cicer arietinum L. HOM05D006402 ORTHO05D008099 1.5e-41 173.3 126 67.5
FAN20G3208 Fragaria x ananassa HOM05D006402 ORTHO05D008099 3.2e-41 172.2 152 63.2
FAN27G3062 Fragaria x ananassa HOM05D006402 ORTHO05D008099 3.2e-41 172.2 152 62.5
CsaV3_2G024420 Cucumis sativus L. HOM05D006402 ORTHO05D008099 9.5e-41 170.6 144 65.3
Eucgr.F01698 Eucalyptus grandis HOM05D006402 ORTHO05D008099 1.6e-40 169.9 155 60.0
FvH4_2g37980 Fragaria vesca HOM05D006402 ORTHO05D008099 2.1e-40 169.5 152 61.8
Phvul.001G003000 Phaseolus vulgaris HOM05D006402 ORTHO05D008099 2.7e-40 169.1 151 60.3
TPR.G26406 Trifolium pratense HOM05D006402 ORTHO05D008099 6.1e-40 167.9 126 67.5
VMungo0647G0728 Vigna mungo HOM05D006402 ORTHO05D008099 8.0e-40 167.5 150 60.7
CDE05G2406 Ceratophyllum demersum HOM05D000228 ORTHO05D001122 1.0e-39 167.2 131 65.6
ATR0580G246 Amborella trichopoda HOM05D006402 ORTHO05D008099 1.4e-39 166.8 131 66.4
Lj5g0026723 Lotus japonicus HOM05D006402 ORTHO05D008099 5.2e-39 164.9 159 56.0
SEGI_22650 Sequoiadendron giganteum HOM05D006402 ORTHO05D008099 2.0e-38 162.9 130 63.1
ATR0680G026 Amborella trichopoda HOM05D006402 ORTHO05D008099 5.7e-38 161.4 131 64.9
Glyma.17G261100 Glycine max HOM05D006402 ORTHO05D008099 7.5e-38 161.0 146 58.2
Psat6g001160 Pisum sativum HOM05D006402 ORTHO05D008099 9.8e-38 160.6 127 63.8
Gohir.D09G027401 Gossypium hirsutum HOM05D006402 ORTHO05D008099 1.7e-37 159.8 127 65.4
Medtr1g026078 Medicago truncatula HOM05D006402 ORTHO05D008099 2.2e-37 159.5 124 66.1
Glyma.09G042800 Glycine max HOM05D006402 ORTHO05D008099 2.4e-36 156.0 119 64.7
BcaC03g15641 Brassica carinata HOM05D006402 ORTHO05D008099 5.9e-35 151.4 158 55.7
Zm00001eb002920 Zea mays HOM05D006402 ORTHO05D008099 3.8e-34 148.7 127 60.6
SHI08020 Sapria himalayana HOM05D006402 ORTHO05D008099 1.1e-33 147.1 124 61.3
Os03g0136600 Oryza sativa ssp. japonica HOM05D006402 ORTHO05D008099 7.3e-33 144.4 131 57.3
BolC2t09355H Brassica oleracea HOM05D006402 ORTHO05D008099 4.9e-29 131.7 155 50.3
Pp3c14_25160 Physcomitrium patens HOM05D006402 ORTHO05D008099 8.3e-29 131.0 123 53.7
C02p33500 Brassica napus HOM05D006402 ORTHO05D008099 1.8e-28 129.8 155 49.7
BraA02t07072Z Brassica rapa HOM05D006402 ORTHO05D008099 5.9e-27 124.8 86 74.4
SMO358G0213 Selaginella moellendorffii HOM05D006402 ORTHO05D008099 1.3e-26 123.6 124 49.2
BcaC08g47099 Brassica carinata HOM05D006402 ORTHO05D008099 6.6e-26 121.3 103 60.2
AagrBONN_evm.TU.Sc2ySwM_228.4698 Anthoceros agrestis HOM05D006402 ORTHO05D008099 8.6e-26 120.9 135 50.4
PRCOL_00001167 Prasinoderma coloniale HOM05D006402 ORTHO05D008099 4.7e-24 115.2 107 57.0
Mapoly0186s0006 Marchantia polymorpha HOM05D006402 ORTHO05D008099 1.4e-23 113.6 131 50.4
CBR_g51533 Chara braunii HOM05D006402 ORTHO05D008099 1.1e-20 104.0 119 46.2
QL08p014343 Quercus lobata HOM05D006402 ORTHO05D008099 3.2e-20 102.4 125 48.0
MCO02G370 Micromonas commoda HOM05D006402 ORTHO05D008099 4.6e-19 98.6 80 57.5
Cre01.g028150 Chlamydomonas reinhardtii HOM05D006402 ORTHO05D008099 1.3e-18 97.1 110 45.5
Eucgr.F01697 Eucalyptus grandis HOM05D006402 ORTHO05D008099 3.3e-17 92.4 102 50.0
BcaC08g47297 Brassica carinata HOM05D006402 ORTHO05D008099 4.3e-17 92.0 155 40.0
MD15G1006900 Malus domestica HOM05D006402 ORTHO05D008099 4.3e-17 92.0 90 57.8
Sed0026898 Sechium edule HOM05D006402 ORTHO05D008099 2.2e-13 79.7 120 42.5
Glyma.14G222200 Glycine max HOM05D006402 ORTHO05D008099 3.0e-10 69.3 58 65.5
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 1.1e-07 60.8 49 69.4


User provided reference genes

Program Settings