Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047616 Camellia sinensis var. sinensis HOM05D009300 ORTHO05D010234 4.9e-194 681.0 361 100.0
CSS0037204 Camellia sinensis var. sinensis HOM05D009300 ORTHO05D010234 4.2e-137 491.9 348 75.3
CSS0010902 Camellia sinensis var. sinensis HOM05D009300 ORTHO05D010234 4.5e-131 471.9 348 76.4
CSS0007178 Camellia sinensis var. sinensis HOM05D009300 ORTHO05D010234 7.2e-129 464.5 327 81.3
CSS0017527 Camellia sinensis var. sinensis HOM05D009300 ORTHO05D010234 1.5e-81 307.4 270 68.9
CSS0040020 Camellia sinensis var. sinensis HOM05D009300 ORTHO05D010234 9.6e-73 278.1 292 56.2
CSS0041515 Camellia sinensis var. sinensis HOM05D009300 ORTHO05D010234 6.9e-71 271.9 274 58.0
CSS0001367 Camellia sinensis var. sinensis HOM05D009300 ORTHO05D010234 4.0e-63 246.1 291 51.2
Rhsim12G0092900 Rhododendron simsii HOM05D009300 ORTHO05D010234 1.3e-40 171.4 216 44.9
CSS0007087 Camellia sinensis var. sinensis HOM05D009300 ORTHO05D010234 1.3e-37 161.4 173 57.2
CSS0015616 Camellia sinensis var. sinensis HOM05D009300 ORTHO05D010234 1.1e-36 158.3 173 56.6
CSS0019759 Camellia sinensis var. sinensis HOM05D009300 ORTHO05D010234 3.9e-34 149.8 186 52.7
vmacro12141 Vaccinium macrocarpon HOM05D009300 ORTHO05D010234 1.1e-33 148.3 298 34.6
vmacro12139 Vaccinium macrocarpon HOM05D009300 ORTHO05D010234 4.4e-33 146.4 224 39.3
RhsimUnG0101600 Rhododendron simsii HOM05D009300 ORTHO05D010234 2.2e-29 134.0 254 31.9
vmacro00531 Vaccinium macrocarpon HOM05D009300 ORTHO05D010234 1.9e-28 131.0 248 35.1
vmacro14328 Vaccinium macrocarpon HOM05D009300 ORTHO05D010234 7.5e-25 119.0 254 34.6
Rhsim01G0128900 Rhododendron simsii HOM05D009300 ORTHO05D010234 1.3e-24 118.2 218 32.1
vmacro13356 Vaccinium macrocarpon HOM05D009300 ORTHO05D010234 1.1e-23 115.2 214 34.1
Rhsim10G0213800 Rhododendron simsii HOM05D008549 ORTHO05D010234 4.2e-20 103.2 244 29.5
vmacro13454 Vaccinium macrocarpon HOM05D009300 ORTHO05D010234 7.2e-20 102.4 182 35.7
Rhsim07G0158800 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.4e-18 98.2 211 34.6
Rhsim06G0220100 Rhododendron simsii HOM05D008549 ORTHO05D010234 1.8e-18 97.8 230 30.0
vmacro23182 Vaccinium macrocarpon HOM05D008549 ORTHO05D010234 1.8e-18 97.8 233 27.5
Rhsim10G0179100 Rhododendron simsii HOM05D009300 ORTHO05D010234 3.0e-18 97.1 121 47.1
Rhsim06G0127000 Rhododendron simsii HOM05D009565 ORTHO05D012252 4.0e-18 96.7 270 28.1
vmacro17806 Vaccinium macrocarpon HOM05D008549 ORTHO05D010234 4.0e-18 96.7 233 27.5
Rhsim02G0138000 Rhododendron simsii HOM05D009300 ORTHO05D010234 1.5e-17 94.7 123 40.7
Rhsim04G0140300 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.0e-17 94.4 212 33.0
Rhsim10G0126600 Rhododendron simsii HOM05D009565 ORTHO05D012252 2.0e-17 94.4 271 27.3
Rhsim03G0038000 Rhododendron simsii HOM05D009565 ORTHO05D012252 1.3e-16 91.7 233 30.0
Rhsim05G0212100 Rhododendron simsii HOM05D007798 ORTHO05D009882 8.3e-16 89.0 188 32.4
Rhsim11G0014100 Rhododendron simsii HOM05D009300 ORTHO05D010234 8.3e-16 89.0 105 45.7
PGR004G1992 Punica granatum HOM05D000791 ORTHO05D000669 1.1e-15 88.6 211 29.4
Dinv11320 Davidia involucrata HOM05D000791 ORTHO05D000669 2.4e-15 87.4 215 29.8
Rhsim12G0114600 Rhododendron simsii HOM05D009565 ORTHO05D012252 2.4e-15 87.4 229 29.7
vmacro14701 Vaccinium macrocarpon HOM05D008549 ORTHO05D010234 4.1e-15 86.7 174 31.0
vmacro14771 Vaccinium macrocarpon HOM05D008549 ORTHO05D010234 4.1e-15 86.7 174 31.0
Rhsim09G0060200 Rhododendron simsii HOM05D008549 ORTHO05D010234 1.2e-14 85.1 242 29.3
MBI16_g20833_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 2.7e-14 84.0 234 27.8
MBI12_g43234_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.0e-13 82.0 233 28.3
MBI19_g18851_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.3e-13 81.6 216 28.2
MBI07_g22513_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.7e-13 81.3 216 27.3
MBI19_g18856_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 2.3e-13 80.9 216 27.8
Rhsim01G0076100 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.3e-13 80.9 228 29.4
MBI19_g01025_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 2.9e-13 80.5 217 27.6
MBI14_g01819_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 8.6e-13 79.0 211 28.0
MBI13_g12520_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.5e-12 78.2 234 28.2
CSS0036223 Camellia sinensis var. sinensis HOM05D009300 ORTHO05D010234 1.9e-12 77.8 73 54.8
Rhsim01G0063300 Rhododendron simsii HOM05D007798 ORTHO05D009882 1.9e-12 77.8 196 26.5
MBI10_g06414_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 2.5e-12 77.4 206 28.6
MBI07_g41667_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 4.2e-12 76.6 211 27.5
MBI13_g26213_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 5.5e-12 76.3 211 27.5
MBI17_g38326_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 5.5e-12 76.3 207 27.5
Rhsim07G0185300 Rhododendron simsii HOM05D000107 ORTHO05D003213 5.5e-12 76.3 96 46.9
Rhsim09G0079100 Rhododendron simsii HOM05D009565 ORTHO05D012252 9.5e-12 75.5 187 27.8
RhsimUnG0074200 Rhododendron simsii HOM05D000107 ORTHO05D000062 9.5e-12 75.5 89 48.3
MELO3C034455.2 Cucumis melo HOM05D001963 ORTHO05D001863 1.2e-11 75.1 179 27.4
Migut.F01288 Erythranthe guttata HOM05D000791 ORTHO05D000669 1.2e-11 75.1 220 28.6
MBI05_g15995_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.2e-11 75.1 188 29.3
MBI14_g16528_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.2e-11 75.1 170 29.4
RhsimUnG0025000 Rhododendron simsii HOM05D007798 ORTHO05D009882 1.2e-11 75.1 142 33.8
MBI11_g33696_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 2.1e-11 74.3 211 27.5
MELO3C030180.2 Cucumis melo HOM05D001963 ORTHO05D001863 2.8e-11 73.9 180 27.2
MBI08_g40514_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 3.6e-11 73.6 204 27.0
MELO3C028240.2 Cucumis melo HOM05D001963 ORTHO05D001863 4.7e-11 73.2 204 26.5
Migut.N00810 Erythranthe guttata HOM05D000791 ORTHO05D000669 4.7e-11 73.2 220 27.7
Rhsim04G0111400 Rhododendron simsii HOM05D009565 ORTHO05D012252 8.0e-11 72.4 196 28.1
Rhsim06G0120600 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.0e-10 72.0 200 27.5
MBI14_g25533_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.4e-10 71.6 191 27.7
Hma1.2p1_0613F.1_g189140 Hydrangea macrophylla HOM05D007798 ORTHO05D009882 2.3e-10 70.9 205 24.4
Hma1.2p1_0101F.1_g049380 Hydrangea macrophylla HOM05D005507 ORTHO05D009882 5.2e-10 69.7 176 29.0
Dinv18594 Davidia involucrata HOM05D000791 ORTHO05D000669 6.8e-10 69.3 216 28.7
MBI19_g27593_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 6.8e-10 69.3 175 28.0
MBI18_g19501_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 8.8e-10 68.9 196 27.6
TWI59G0531 Tripterygium wilfordii HOM05D003120 ORTHO05D003568 1.2e-09 68.6 195 28.2
MELO3C034470.2 Cucumis melo HOM05D001963 ORTHO05D001863 2.6e-09 67.4 205 25.4
Sed0000006 Sechium edule HOM05D000791 ORTHO05D001863 2.6e-09 67.4 204 23.0
Rhsim06G0049000 Rhododendron simsii HOM05D009300 ORTHO05D010234 3.4e-09 67.0 103 40.8
QL05p078054 Quercus lobata HOM05D007798 ORTHO05D009882 4.4e-09 66.6 235 25.1
Actinidia04231 Actinidia chinensis HOM05D007798 ORTHO05D009882 5.7e-09 66.2 201 29.9
CSS0011165 Camellia sinensis var. sinensis HOM05D009300 ORTHO05D010234 5.7e-09 66.2 132 47.7
CSS0019851 Camellia sinensis var. sinensis HOM05D009300 ORTHO05D010234 5.7e-09 66.2 132 47.7
MELO3C033641.2 Cucumis melo HOM05D001963 ORTHO05D001863 5.7e-09 66.2 168 25.6
Peaxi162Scf00524g00083 Petunia axillaris HOM05D003120 ORTHO05D003568 5.7e-09 66.2 217 25.8
RhsimUnG0068400 Rhododendron simsii HOM05D000107 ORTHO05D000062 5.7e-09 66.2 72 43.1
TWI18G1095 Tripterygium wilfordii HOM05D003120 ORTHO05D003568 5.7e-09 66.2 290 26.2
TWI73G1228 Tripterygium wilfordii HOM05D003120 ORTHO05D003568 5.7e-09 66.2 290 26.2
MELO3C030815.2 Cucumis melo HOM05D001963 ORTHO05D001863 7.5e-09 65.9 174 26.4
CSS0005216 Camellia sinensis var. sinensis HOM05D017338 ORTHO05D010234 9.8e-09 65.5 73 43.8
CSS0029580 Camellia sinensis var. sinensis HOM05D017338 ORTHO05D010234 9.8e-09 65.5 73 43.8
CSS0037861 Camellia sinensis var. sinensis HOM05D017338 ORTHO05D010234 9.8e-09 65.5 73 43.8
CSS0039359 Camellia sinensis var. sinensis HOM05D017338 ORTHO05D010234 9.8e-09 65.5 73 43.8
Peaxi162Scf00250g00511 Petunia axillaris HOM05D003120 ORTHO05D003568 9.8e-09 65.5 217 25.8
CSS0034635 Camellia sinensis var. sinensis HOM05D009300 ORTHO05D003213 1.3e-08 65.1 33 84.8
Peaxi162Scf00085g00199 Petunia axillaris HOM05D003120 ORTHO05D003568 1.3e-08 65.1 217 25.8
MELO3C032745.2 Cucumis melo HOM05D001963 ORTHO05D001863 1.7e-08 64.7 175 26.9
Peaxi162Scf00091g00169 Petunia axillaris HOM05D003120 ORTHO05D003568 1.7e-08 64.7 217 25.8
MELO3C028156.2 Cucumis melo HOM05D001963 ORTHO05D001863 2.2e-08 64.3 151 27.8
CSS0020531 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D003213 2.8e-08 63.9 33 84.8
Actinidia03841 Actinidia chinensis HOM05D007798 ORTHO05D009882 3.7e-08 63.5 249 26.1
CSS0023015 Camellia sinensis var. sinensis HOM05D017338 ORTHO05D010234 4.9e-08 63.2 73 43.8
MBI14_g07056_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 4.9e-08 63.2 211 27.5
MBI18_g01981_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 4.9e-08 63.2 225 24.4
MBI04_g25418_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 8.3e-08 62.4 213 25.8
CSS0027932 Camellia sinensis var. sinensis HOM05D017338 ORTHO05D010234 1.1e-07 62.0 67 46.3
MELO3C032226.2 Cucumis melo HOM05D001963 ORTHO05D001863 1.4e-07 61.6 167 25.1
RcHm_v2.0_Chr3g0486961 Rosa chinensis HOM05D008705 ORTHO05D000669 1.4e-07 61.6 235 23.4
CSS0048637 Camellia sinensis var. sinensis HOM05D021745 ORTHO05D010234 1.8e-07 61.2 72 38.9
Dinv13764 Davidia involucrata HOM05D011313 ORTHO05D013316 1.8e-07 61.2 209 25.4
Nitab4.5_0006444g0010 Nicotiana tabacum HOM05D003120 ORTHO05D003568 3.1e-07 60.5 231 22.5
RcHm_v2.0_Chr1g0381191 Rosa chinensis HOM05D008705 ORTHO05D000669 4.1e-07 60.1 230 23.9
MELO3C034958.2 Cucumis melo HOM05D001963 ORTHO05D001863 5.4e-07 59.7 233 25.3
FAN10G2090 Fragaria x ananassa HOM05D008705 ORTHO05D000669 5.4e-07 59.7 173 25.4
CSS0000180 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 7.0e-07 59.3 219 25.6
MELO3C027970.2 Cucumis melo HOM05D001963 ORTHO05D001863 7.0e-07 59.3 221 25.3
MELO3C031127.2 Cucumis melo HOM05D001963 ORTHO05D001863 7.0e-07 59.3 164 23.8
FAN10G3855 Fragaria x ananassa HOM05D008705 ORTHO05D000669 9.2e-07 58.9 173 25.4
MBI05_g43492_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.2e-06 58.5 117 29.1
Nitab4.5_0000892g0160 Nicotiana tabacum HOM05D003120 ORTHO05D003568 1.2e-06 58.5 216 24.1
Nitab4.5_0003305g0030 Nicotiana tabacum HOM05D003120 ORTHO05D003568 1.2e-06 58.5 193 24.4
Peaxi162Scf00878g00111 Petunia axillaris HOM05D003120 ORTHO05D003568 1.2e-06 58.5 170 27.1
CSS0019606 Camellia sinensis var. sinensis HOM05D021745 ORTHO05D010234 1.6e-06 58.2 72 36.1
FAN20G1055 Fragaria x ananassa HOM05D008705 ORTHO05D001863 1.6e-06 58.2 174 25.3
Peaxi162Scf00287g00413 Petunia axillaris HOM05D003120 ORTHO05D003568 1.6e-06 58.2 207 24.6
CSS0033294 Camellia sinensis var. sinensis HOM05D021745 ORTHO05D010234 2.0e-06 57.8 72 36.1
CSS0049548 Camellia sinensis var. sinensis HOM05D014646 ORTHO05D010234 2.0e-06 57.8 67 46.3
MELO3C031923.2 Cucumis melo HOM05D001963 ORTHO05D001863 2.0e-06 57.8 110 30.9
Nitab4.5_0008225g0020 Nicotiana tabacum HOM05D003120 ORTHO05D003568 2.0e-06 57.8 213 23.5
RcHm_v2.0_Chr7g0214031 Rosa chinensis HOM05D008705 ORTHO05D000669 2.0e-06 57.8 230 23.5
CSS0002056 Camellia sinensis var. sinensis HOM05D021745 ORTHO05D010234 2.7e-06 57.4 72 36.1
CSS0009398 Camellia sinensis var. sinensis HOM05D021745 ORTHO05D010234 2.7e-06 57.4 72 36.1
CSS0045362 Camellia sinensis var. sinensis HOM05D014646 ORTHO05D010234 3.5e-06 57.0 72 44.4
MELO3C031469.2 Cucumis melo HOM05D001963 ORTHO05D001863 3.5e-06 57.0 203 25.1
FvH4_1g01701 Fragaria vesca HOM05D002291 ORTHO05D000222 3.5e-06 57.0 166 27.7
FAN19G1637 Fragaria x ananassa HOM05D002291 ORTHO05D000222 3.5e-06 57.0 166 27.7
FAN28G2311 Fragaria x ananassa HOM05D002291 ORTHO05D000222 3.5e-06 57.0 166 27.7
Peaxi162Scf00009g00715 Petunia axillaris HOM05D003120 ORTHO05D003568 3.5e-06 57.0 242 23.1
vmacro01281 Vaccinium macrocarpon HOM05D017301 ORTHO05D000669 3.5e-06 57.0 175 26.9
Actinidia33688 Actinidia chinensis HOM05D007798 ORTHO05D009882 4.5e-06 56.6 97 35.1
Actinidia39405 Actinidia chinensis HOM05D007798 ORTHO05D009882 4.5e-06 56.6 94 30.9
CSS0008322 Camellia sinensis var. sinensis HOM05D014646 ORTHO05D010234 5.9e-06 56.2 72 43.1
MELO3C029550.2 Cucumis melo HOM05D001963 ORTHO05D001863 5.9e-06 56.2 110 30.0
MELO3C032181.2 Cucumis melo HOM05D001963 ORTHO05D001863 5.9e-06 56.2 173 25.4
Peaxi162Scf00010g00918 Petunia axillaris HOM05D003120 ORTHO05D003568 5.9e-06 56.2 212 23.6
Rhsim04G0237300 Rhododendron simsii HOM05D000107 ORTHO05D000062 5.9e-06 56.2 68 44.1
RcHm_v2.0_Chr2g0086631 Rosa chinensis HOM05D002291 ORTHO05D000222 5.9e-06 56.2 215 25.6
MELO3C034953.2 Cucumis melo HOM05D001963 ORTHO05D001863 7.8e-06 55.8 109 30.3


User provided reference genes

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