Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047600 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 2.7e-188 661.8 320 100.0
CSS0014093 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 5.2e-70 268.9 159 84.3
Cfa003959 Carpinus fangiana HOM05D003698 ORTHO05D004320 2.2e-65 253.4 155 79.4
Actinidia09997 Actinidia chinensis HOM05D003698 ORTHO05D004320 5.0e-65 252.3 158 79.1
Dinv43781 Davidia involucrata HOM05D003698 ORTHO05D004320 6.5e-65 251.9 157 79.0
Dinv43783 Davidia involucrata HOM05D003698 ORTHO05D004320 6.5e-65 251.9 157 79.0
MD01G1053400 Malus domestica HOM05D003698 ORTHO05D004320 2.5e-64 250.0 155 78.7
CiPaw.01G057600 Carya illinoinensis HOM05D003698 ORTHO05D004320 7.2e-64 248.4 155 78.1
arahy.Tifrunner.gnm1.ann1.0R79PA Arachis hypogaea HOM05D003698 ORTHO05D004320 1.2e-63 247.7 154 77.9
CSS0025539 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 1.2e-63 247.7 159 77.4
Hma1.2p1_0033F.1_g020410 Hydrangea macrophylla HOM05D003698 ORTHO05D004320 1.2e-63 247.7 156 77.6
arahy.Tifrunner.gnm1.ann1.51RIH8 Arachis hypogaea HOM05D003698 ORTHO05D004320 1.6e-63 247.3 154 77.9
Lj1g0021860 Lotus japonicus HOM05D003698 ORTHO05D004320 1.6e-63 247.3 154 78.6
MD07G1141700 Malus domestica HOM05D003698 ORTHO05D004320 1.6e-63 247.3 155 77.4
arahy.Tifrunner.gnm1.ann1.L2MSK1 Arachis hypogaea HOM05D003698 ORTHO05D004320 2.1e-63 246.9 154 77.9
Nn1g01429 Nelumbo nucifera HOM05D003698 ORTHO05D004320 2.1e-63 246.9 156 76.9
Thecc.01G363600 Theobroma cacao HOM05D003698 ORTHO05D004320 2.1e-63 246.9 154 78.6
VMungo1383G3090 Vigna mungo HOM05D003698 ORTHO05D004320 2.7e-63 246.5 154 77.9
COL.COLO4_12672 Corchorus olitorius HOM05D003698 ORTHO05D004320 3.6e-63 246.1 155 77.4
Glyma.18G229800 Glycine max HOM05D003698 ORTHO05D004320 3.6e-63 246.1 154 78.6
Medtr7g076670 Medicago truncatula HOM05D003698 ORTHO05D004320 3.6e-63 246.1 154 77.9
Psat3g111000 Pisum sativum HOM05D003698 ORTHO05D004320 3.6e-63 246.1 154 77.9
Rhsim07G0018200 Rhododendron simsii HOM05D003698 ORTHO05D004320 3.6e-63 246.1 159 76.7
vmacro20957 Vaccinium macrocarpon HOM05D003698 ORTHO05D004320 3.6e-63 246.1 191 66.5
GSVIVG01026838001 Vitis vinifera HOM05D003698 ORTHO05D004320 3.6e-63 246.1 155 77.4
Cpa.g.sc170.35 Carica papaya HOM05D003698 ORTHO05D004320 4.7e-63 245.7 155 76.8
Ca_07888_v3 Cicer arietinum L. HOM05D003698 ORTHO05D004320 4.7e-63 245.7 154 77.9
Eucgr.E00184 Eucalyptus grandis HOM05D003698 ORTHO05D004320 4.7e-63 245.7 156 75.6
Gorai.004G157100 Gossypium raimondii HOM05D003698 ORTHO05D004320 4.7e-63 245.7 155 78.1
Potri.014G080500 Populus trichocarpa HOM05D003698 ORTHO05D004320 6.1e-63 245.4 155 77.4
Dinv32446 Davidia involucrata HOM05D003698 ORTHO05D004320 8.0e-63 245.0 157 77.7
Glyma.09G262400 Glycine max HOM05D003698 ORTHO05D004320 8.0e-63 245.0 154 77.9
Gohir.A12G104900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 8.0e-63 245.0 155 76.8
Prupe.2G162400 Prunus persica HOM05D003698 ORTHO05D004320 8.0e-63 245.0 155 76.8
Manes.01G259900 Manihot esculenta HOM05D003698 ORTHO05D004320 1.0e-62 244.6 155 77.4
CANSAT56G2897 Cannabis sativa HOM05D003698 ORTHO05D004320 1.4e-62 244.2 155 76.1
Gohir.D08G151400 Gossypium hirsutum HOM05D003698 ORTHO05D004320 1.4e-62 244.2 155 77.4
Manes.05G037500 Manihot esculenta HOM05D003698 ORTHO05D004320 1.8e-62 243.8 155 76.8
Oeu014677.1 Olea europaea HOM05D003698 ORTHO05D004320 1.8e-62 243.8 155 77.4
PSO478G0134 Papaver somniferum HOM05D003698 ORTHO05D004320 1.8e-62 243.8 159 73.0
PSO782G3808 Papaver somniferum HOM05D003698 ORTHO05D004320 1.8e-62 243.8 159 73.0
TAR629G2702 Trochodendron aralioides HOM05D003698 ORTHO05D004320 1.8e-62 243.8 155 76.8
Gohir.A08G129900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 2.3e-62 243.4 155 77.4
CSS0039842 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 3.0e-62 243.0 159 77.4
Eucgr.E00182 Eucalyptus grandis HOM05D003698 ORTHO05D004320 3.0e-62 243.0 156 75.0
Cc02_g37580 Coffea canephora HOM05D003698 ORTHO05D004320 6.8e-62 241.9 154 77.9
Phvul.008G068100 Phaseolus vulgaris HOM05D003698 ORTHO05D004320 6.8e-62 241.9 154 76.0
MSTRG.4868 Avicennia marina HOM05D003698 ORTHO05D004320 8.8e-62 241.5 155 76.1
FvH4_7g13630 Fragaria vesca HOM05D003698 ORTHO05D004320 8.8e-62 241.5 155 74.2
FAN01G1997 Fragaria x ananassa HOM05D003698 ORTHO05D004320 8.8e-62 241.5 155 74.2
FAN06G0259 Fragaria x ananassa HOM05D003698 ORTHO05D004320 8.8e-62 241.5 155 74.2
Gohir.D12G108800 Gossypium hirsutum HOM05D003698 ORTHO05D004320 8.8e-62 241.5 155 77.4
Gorai.008G117900 Gossypium raimondii HOM05D003698 ORTHO05D004320 8.8e-62 241.5 155 77.4
ECA236G4925 Erigeron canadensis HOM05D003698 ORTHO05D004320 1.2e-61 241.1 157 73.2
RcHm_v2.0_Chr1g0353671 Rosa chinensis HOM05D003698 ORTHO05D004320 1.5e-61 240.7 156 73.1
Nitab4.5_0010110g0030 Nicotiana tabacum HOM05D003698 ORTHO05D004320 2.6e-61 240.0 156 76.3
Os04g0682300 Oryza sativa ssp. japonica HOM05D003698 ORTHO05D004320 2.6e-61 240.0 156 74.4
Duzib133G0563 Durio zibethinus HOM05D003698 ORTHO05D004320 3.4e-61 239.6 155 75.5
TWI59G0439 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 3.4e-61 239.6 156 73.1
Zm00001eb065790 Zea mays HOM05D003698 ORTHO05D004320 3.4e-61 239.6 156 74.4
Lalb_Chr04g0256721 Lupinus albus HOM05D003698 ORTHO05D004320 4.4e-61 239.2 153 76.5
Sopen08g004500 Solanum pennellii HOM05D003698 ORTHO05D004320 4.4e-61 239.2 156 75.0
Oeu014681.1 Olea europaea HOM05D003698 ORTHO05D004320 5.7e-61 238.8 156 75.6
Peaxi162Scf00397g00424 Petunia axillaris HOM05D003698 ORTHO05D004320 7.5e-61 238.4 156 74.4
Potri.014G080300 Populus trichocarpa HOM05D003698 ORTHO05D004320 7.5e-61 238.4 155 75.5
QL08p049567 Quercus lobata HOM05D003698 ORTHO05D004320 7.5e-61 238.4 154 74.0
TWI59G0409 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 7.5e-61 238.4 156 73.7
SGA_v2.0_scaffold11G05655 Striga asiatica HOM05D003698 ORTHO05D004320 9.8e-61 238.0 155 76.1
Solyc05g048760.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 1.3e-60 237.7 156 74.4
PGSC0003DMG400021636 Solanum tuberosum HOM05D003698 ORTHO05D004320 1.3e-60 237.7 156 74.4
Lsat_1_v5_gn_7_5261 Lactuca sativa HOM05D003698 ORTHO05D004320 1.7e-60 237.3 155 72.9
PGR042G0708 Punica granatum HOM05D003698 ORTHO05D004320 1.7e-60 237.3 155 74.8
PGR044G0179 Punica granatum HOM05D003698 ORTHO05D004320 1.7e-60 237.3 155 75.5
ClCG11G000500 Citrullus lanatus HOM05D003698 ORTHO05D004320 2.2e-60 236.9 152 75.0
Aqoxy7G00375 Aquilegia oxysepala HOM05D003698 ORTHO05D004320 2.8e-60 236.5 155 74.2
MELO3C026482.2 Cucumis melo HOM05D003698 ORTHO05D004320 3.7e-60 236.1 152 75.0
Solyc08g008670.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 3.7e-60 236.1 156 73.7
Sopen05g028080 Solanum pennellii HOM05D003698 ORTHO05D004320 3.7e-60 236.1 156 73.7
Nitab4.5_0010827g0020 Nicotiana tabacum HOM05D003698 ORTHO05D004320 6.3e-60 235.3 156 73.7
HanXRQChr04g0121661 Helianthus annuus HOM05D003698 ORTHO05D004320 8.3e-60 235.0 157 71.3
Sabra14G0058400 Salix brachista HOM05D003698 ORTHO05D004320 8.3e-60 235.0 149 76.5
TWI14G1008 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 8.3e-60 235.0 155 72.9
Nitab4.5_0001702g0210 Nicotiana tabacum HOM05D003698 ORTHO05D004320 1.1e-59 234.6 156 74.4
CAN.G134.78 Capsicum annuum HOM05D003698 ORTHO05D004320 1.4e-59 234.2 156 73.1
CiPaw.02G028200 Carya illinoinensis HOM05D003698 ORTHO05D004320 1.8e-59 233.8 156 74.4
HanXRQChr06g0169891 Helianthus annuus HOM05D003698 ORTHO05D004320 1.8e-59 233.8 154 72.7
Sed0025976 Sechium edule HOM05D003698 ORTHO05D004320 3.1e-59 233.0 152 73.0
SalBow5G4069 Salvia bowleyana HOM05D003698 ORTHO05D004320 4.1e-59 232.6 154 72.1
CDE05G2621 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 9.1e-59 231.5 156 72.4
CDE08G1212 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 1.2e-58 231.1 156 73.1
PGSC0003DMG400013702 Solanum tuberosum HOM05D003698 ORTHO05D004320 2.0e-58 230.3 156 73.1
Ciclev10024269m.g Citrus clementina HOM05D003698 ORTHO05D004320 3.5e-58 229.6 173 67.1
Lj9A580G54 Lonicera japonica HOM05D003698 ORTHO05D004320 4.5e-58 229.2 158 70.9
ATR0680G146 Amborella trichopoda HOM05D003698 ORTHO05D004320 2.9e-57 226.5 153 71.2
AL4G44990 Arabidopsis lyrata HOM05D003698 ORTHO05D004320 3.8e-57 226.1 154 69.5
CSS0016921 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 3.8e-57 226.1 138 80.4
AT2G45790 Arabidopsis thaliana HOM05D003698 ORTHO05D004320 5.0e-57 225.7 154 70.1
BraA04t18865Z Brassica rapa HOM05D003698 ORTHO05D004320 5.0e-57 225.7 154 69.5
MBI18_g09776_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 5.0e-57 225.7 198 60.1
unitig_22.g6808 Utricularia gibba HOM05D003698 ORTHO05D004320 5.0e-57 225.7 155 72.9
BcaC01g05105 Brassica carinata HOM05D003698 ORTHO05D004320 6.5e-57 225.3 154 69.5
A03p25370 Brassica napus HOM05D003698 ORTHO05D004320 6.5e-57 225.3 154 69.5
C03p30280 Brassica napus HOM05D003698 ORTHO05D004320 6.5e-57 225.3 154 69.5
BolC3t15377H Brassica oleracea HOM05D003698 ORTHO05D004320 6.5e-57 225.3 154 69.5
CARHR141060 Cardamine hirsuta HOM05D003698 ORTHO05D004320 6.5e-57 225.3 154 69.5
BraA03t11743Z Brassica rapa HOM05D003698 ORTHO05D004320 8.6e-57 224.9 154 68.8
Haze_05811 Corylus avellana HOM05D003698 ORTHO05D004320 8.6e-57 224.9 171 67.3
BcaB01g03252 Brassica carinata HOM05D003698 ORTHO05D004320 1.1e-56 224.6 154 69.5
Carub.0004s2849 Capsella rubella HOM05D003698 ORTHO05D004320 1.1e-56 224.6 154 69.5
Thhalv10001604m.g Eutrema salsugineum HOM05D003698 ORTHO05D004320 1.1e-56 224.6 154 69.5
Sp4g27860 Schrenkiella parvula HOM05D003698 ORTHO05D004320 1.1e-56 224.6 154 68.8
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 1.1e-56 224.6 156 70.5
AUR62036720 Chenopodium quinoa HOM05D003698 ORTHO05D004320 2.5e-56 223.4 157 69.4
Solyc05g046340.2 Solanum lycopersicum HOM05D003698 ORTHO05D004320 2.5e-56 223.4 156 70.5
Ah.13g077050 Amaranthus hybridus HOM05D003698 ORTHO05D004320 3.2e-56 223.0 157 68.2
BcaB02g09006 Brassica carinata HOM05D003698 ORTHO05D004320 3.2e-56 223.0 154 68.8
BcaC02g12181 Brassica carinata HOM05D003698 ORTHO05D004320 3.2e-56 223.0 154 68.8
A04p34040 Brassica napus HOM05D003698 ORTHO05D004320 3.2e-56 223.0 154 68.8
A05p05780 Brassica napus HOM05D003698 ORTHO05D004320 3.2e-56 223.0 154 68.8
C04p06720 Brassica napus HOM05D003698 ORTHO05D004320 3.2e-56 223.0 154 68.8
BolC4t22293H Brassica oleracea HOM05D003698 ORTHO05D004320 3.2e-56 223.0 154 68.8
BraA05t19544Z Brassica rapa HOM05D003698 ORTHO05D004320 3.2e-56 223.0 154 68.8
Sopen05g027620 Solanum pennellii HOM05D003698 ORTHO05D004320 3.2e-56 223.0 156 69.9
THA.LOC104817282 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 3.2e-56 223.0 155 68.4
Aa31LG1G27240 Aethionema arabicum HOM05D003698 ORTHO05D004320 4.2e-56 222.6 155 67.7
BolC4t28682H Brassica oleracea HOM05D003698 ORTHO05D004320 4.2e-56 222.6 154 68.8
Peaxi162Scf00246g01118 Petunia axillaris HOM05D003698 ORTHO05D004320 4.2e-56 222.6 156 69.2
C04p71840 Brassica napus HOM05D003698 ORTHO05D004320 5.5e-56 222.2 153 69.3
Mapoly0004s0121 Marchantia polymorpha HOM05D003698 ORTHO05D004320 5.5e-56 222.2 155 71.6
Hund16943 Selenicereus undatus HOM05D003698 ORTHO05D004320 5.5e-56 222.2 157 69.4
SEGI_40114 Sequoiadendron giganteum HOM05D003698 ORTHO05D004320 5.5e-56 222.2 156 70.5
THA.LOC104827595 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 9.5e-56 221.5 155 67.7
SMO367G1007 Selaginella moellendorffii HOM05D003698 ORTHO05D004320 4.7e-55 219.2 155 68.4
BcaC02g07054 Brassica carinata HOM05D003698 ORTHO05D004320 1.4e-54 217.6 154 67.5
Atru.chr5.444 Acer truncatum HOM05D003698 ORTHO05D004320 2.3e-54 216.9 138 76.1
FAN10G2510 Fragaria x ananassa HOM05D004612 ORTHO05D004940 2.3e-54 216.9 140 74.3
Cre14.g626900 Chlamydomonas reinhardtii HOM05D003698 ORTHO05D004320 1.5e-53 214.2 155 66.5
CsaV3_5G014110 Cucumis sativus L. HOM05D003698 ORTHO05D004320 1.5e-53 214.2 143 72.7
Pp3c23_11670 Physcomitrium patens HOM05D003698 ORTHO05D004320 7.5e-53 211.8 156 64.7
SGA_v2.0_scaffold43G16443 Striga asiatica HOM05D003698 ORTHO05D004320 2.2e-52 210.3 138 76.1
DCAR_008599 Daucus carota HOM05D003698 ORTHO05D004320 3.1e-51 206.5 138 72.5
SHI30460 Sapria himalayana HOM05D003698 ORTHO05D004320 5.4e-51 205.7 138 71.0
PGSC0003DMG400005806 Solanum tuberosum HOM05D003698 ORTHO05D004320 3.5e-50 203.0 138 72.5
RhsimUnG0002300 Rhododendron simsii HOM05D003698 ORTHO05D004320 1.0e-49 201.4 139 71.9
CBR_g41657 Chara braunii HOM05D003698 ORTHO05D004320 2.9e-49 199.9 155 63.2
CBR_g44345 Chara braunii HOM05D003698 ORTHO05D004320 3.8e-49 199.5 155 63.2
FAN03G0966 Fragaria x ananassa HOM05D003698 ORTHO05D004320 6.6e-49 198.7 128 72.7
Haze_15453 Corylus avellana HOM05D003698 ORTHO05D004320 2.5e-48 196.8 108 86.1
EL10Ac1g02076 Beta vulgaris HOM05D003698 ORTHO05D004320 2.1e-47 193.7 241 46.1
EL10Ac7g16340 Beta vulgaris HOM05D003698 ORTHO05D004320 8.0e-47 191.8 137 67.9
AUR62013874 Chenopodium quinoa HOM05D003698 ORTHO05D004320 1.0e-46 191.4 138 68.8
Lj7A516T66 Lonicera japonica HOM05D003698 ORTHO05D004320 3.0e-46 189.9 136 66.9
TWI59G0950 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 5.2e-46 189.1 108 81.5
CBR_g4022 Chara braunii HOM05D003698 ORTHO05D004320 1.7e-44 184.1 155 56.8
PRCOL_00001907 Prasinoderma coloniale HOM05D003698 ORTHO05D004320 4.9e-44 182.6 174 54.6
SalBow5G5099 Salvia bowleyana HOM05D003698 ORTHO05D004320 4.9e-44 182.6 107 79.4
MCO01G022 Micromonas commoda HOM05D003698 ORTHO05D004320 9.2e-43 178.3 148 58.8
AagrBONN_evm.TU.Sc2ySwM_117.907 Anthoceros agrestis HOM05D003698 ORTHO05D004320 1.2e-39 167.9 109 73.4
Migut.N01427 Erythranthe guttata HOM05D003698 ORTHO05D004320 3.6e-39 166.4 101 81.2
Cfa027079 Carpinus fangiana HOM05D003698 ORTHO05D004320 2.6e-37 160.2 161 47.2
Nn6g33536 Nelumbo nucifera HOM05D003698 ORTHO05D004320 4.9e-36 156.0 148 56.1
Cpa.g.c46781 Carica papaya HOM05D003698 ORTHO05D004320 3.9e-33 146.4 83 84.3
MSTRG.28213 Avicennia marina HOM05D003698 ORTHO05D004320 1.5e-32 144.4 84 84.5
Haze_24893 Corylus avellana HOM05D003698 ORTHO05D004320 3.3e-32 143.3 108 69.4
Prupe.8G033900 Prunus persica HOM05D003698 ORTHO05D004320 1.6e-31 141.0 97 71.1
HPP92_000764 Vanilla planifolia HOM05D003698 ORTHO05D004320 5.8e-29 132.5 107 62.6
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 5.2e-22 109.4 66 75.8
CANSAT25G0181 Cannabis sativa HOM05D003698 ORTHO05D004320 4.4e-21 106.3 77 66.2
RcHm_v2.0_Chr4g0404481 Rosa chinensis HOM05D003698 ORTHO05D004320 2.9e-20 103.6 89 60.7
RcHm_v2.0_Chr5g0045001 Rosa chinensis HOM05D003698 ORTHO05D004320 1.7e-17 94.4 84 61.9
FAN06G0644 Fragaria x ananassa HOM05D003698 ORTHO05D004320 2.3e-17 94.0 53 79.2
RcHm_v2.0_Chr1g0364561 Rosa chinensis HOM05D003698 ORTHO05D004320 4.7e-15 86.3 51 78.4
CANSAT11G2537 Cannabis sativa HOM05D003698 ORTHO05D004320 1.2e-10 71.6 52 57.7
Hund27303 Selenicereus undatus HOM05D000402 ORTHO05D000263 2.5e-08 63.9 33 84.8
MBI17_g19513_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 9.6e-08 62.0 42 61.9
MBI17_g19514_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 1.4e-06 58.2 36 66.7


User provided reference genes

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